BAC Information

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BAC

Clone NameB6Ng01-320O08
Chromosome19 (Build37)
Map Location 25,817,422 - 25,913,789
singlet/doubletdoublet
Overlap geneEG667806
Upstream genePgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2
Downstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320O08.bB6Ng01-320O08.g
ACCGA110148GA110149
length1,1641,161
definitionB6Ng01-320O08.b B6Ng01-320O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,912,636 - 25,913,789)(25,817,422 - 25,818,571)
sequence
gaattccacctcggaggacaagagccacagctcactgttgtcccaagcag
ctggtcagatggttaaagatctgcctgctgaaagttactcttagatgaca
gccttagaaaaaaaatgttctagtaagcagagtctgcagcccttcacacg
agcatggagtcatttctttttcctttctcacttgagaatgaagttattgt
aaggtctccatactaacaaggcacttcacacagaagccttcgaaaggcta
cggtaggcaacagccagcagagtgcttctatctactgtgcctgccttcct
cataacgcggcttcccccgtaacagtccaacaatgagattttgaaattgt
cctgctcctttgaaaaagaaagctcaattcactagagaaaagtagctggg
agccgccgacgtttcaacagtcagaggctcattgctctggcccagtaatg
agctgatccgagctttaccagaaaccactgtgggatcaaacagccaatca
aaccctcattcccagcagctgaaaggaacaagtggcaatcttattctctt
taaggacatttcccagaagggattcgtaaggatctttgagcatcccattt
gtcaggaatcaatcacagggccacaaacaacctgcaagggacattggaga
acttagtctttattgtagaggcctgttttccaagacatgaactgggagtt
tagttactcaagacactggaagagaattagcagtctgtaattctaactgc
cattttgatccacaaagggaagtaccttccatgactgggtgtctcgacct
gcctgggttcgttcccactgggttagcactgactctgattgctgcttgtt
gtggtgcatcctagtcttatttccacctaccaggggctttgtacactcac
agcttacagttttgacaccccccacgttgaaaaccatttctctctttttg
cttcccacttaaagtcagtcccgtctcaatcctgatttctgggaatgcta
agatgttatttttccctggcatggttgaaataaaaaaaacaaaaatcact
ttagaagaaagaacagttccctaacaacaagttctctgttggtagcttgg
ccttactgctaccttcccataaatgcatgcaatgggaattgcacacaggt
gaacttcgcttaca
gaattctttgttcagctctgagcccatttttttaatggggttattcgatt
ttctggagcccaccttcttgagttctttatatatattggatattagtccc
ctatccaatttgggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttgcagtttta
tgaggtcccatttgtcaattctccatcttactaaccaggattctttcatt
ctggcttgaaaaaaaaaaaaccttgactcatttctggaatgtagtccaat
gcactcttagcttttctcttactagaagaaatttgtatttaattctcttt
tctgaacaacagtgtaactgagaatattcttggttgggcttaacacttat
tcctgagaattcttcttgtggccacataaaattccgagatgtcataggtt
tcttatctctcgtggctcttgaacatttttttctttgtcttttcttttat
gtttttcagtgctaggggttgagcctagaacttcatttgtataaagcaag
aactctactactgacctagcctcaccgttgcatatgatttgtgatagctt
atatggtttgttaaattgataatttggtgggagagctttattcacttgct
atgtatggatattgccacatacccccccagacttgggaagggctgagtct
tcatccttttctttttcacctgtaattcttgttgtgagactgttagttcc
cttggtggtgcctcatattttcctataggcttttgctatgctccaagtag
gatttgagctcccaaaactcacactgaggcttatttttattaatgcagct
gtgccaggaagcaggacttttggggaagtgatttatgacacgaagatatt
ggtcattgttttttcttaagaggctgggattaagtgtcagagacttgggt
taggtctttgtaggtattaactacagttcagtcatttagtcttttatctt
cagggtttaagaaaattatttctatttttagaaagatttatttatttatt
atatttgagttaccactgtggctgtctagaaaccacaggcagaggaggca
tcggatctcattacgaatggttttgagtcacatgtgttgctaggaatttg
gaacttcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25912636_25913789
seq2: B6Ng01-320O08.b_48_1211 (reverse)

seq1  TGTAAGCGAGGTTTTCACCTGTGTGCAATTCCAATTGCATGGCATTATGG  50
      ||||||||| |  ||||||||||||||||||| ||||||||   ||||||
seq2  TGTAAGCGAAG--TTCACCTGTGTGCAATTCCCATTGCATGCATTTATGG  48

seq1  GAAGGGCAGCAGGTAAGGGCAAAGCTA-CAACAGAGACTGTG----TAGG  95
      ||| || |||| |||| ||| |||||| |||||||||   ||    ||||
seq2  GAA-GGTAGCA-GTAA-GGCCAAGCTACCAACAGAGAACTTGTTGTTAGG  95

seq1  GAACTGTTC-TTCTCTAAAAGTGATTT---TGTTTTTTATTTCAACCATG  141
      ||||||||| ||||   ||||||||||   | ||||||||||||||||||
seq2  GAACTGTTCTTTCTTCTAAAGTGATTTTTGTTTTTTTTATTTCAACCATG  145

seq1  CCAGG--AAAATAACATCTTAGCA-TCCCAGAAATCAGGATTGAGACGGG  188
      |||||  ||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAGGGAAAAATAACATCTTAGCATTCCCAGAAATCAGGATTGAGACGGG  195

seq1  ACTGACTTTAAGTGGGAAGC-AAAAGAGAGAAATGGTTTTCAACGT-GGG  236
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  ACTGACTTTAAGTGGGAAGCAAAAAGAGAGAAATGGTTTTCAACGTGGGG  245

seq1  GGTGTCAAAACTGTAAGCTGTGAGTGTACAAAGCCCCTGGTAGGTGGAAA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAAAACTGTAAGCTGTGAGTGTACAAAGCCCCTGGTAGGTGGAAA  295

seq1  TAAGACTAGGATGCACCACAACAAGCAGCAATCAGAGTCAGTGCTAACCC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTAGGATGCACCACAACAAGCAGCAATCAGAGTCAGTGCTAACCC  345

seq1  AGTGGGAACGAACCCAGGCAGGTCGAGACACCCAGTCATGGAAGGTACTT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAACGAACCCAGGCAGGTCGAGACACCCAGTCATGGAAGGTACTT  395

seq1  CCC-TTGTGGATCAAAATGGCAGTTAGAATTACAGACTGCTAATTCTCTT  435
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTGGATCAAAATGGCAGTTAGAATTACAGACTGCTAATTCTCTT  445

seq1  CCAGTGTCTTGAGTAACTAAACTCCCAGTTCATGTCTTGGAAAACAGGCC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTCTTGAGTAACTAAACTCCCAGTTCATGTCTTGGAAAACAGGCC  495

seq1  TCTACAATAAAGACTAAGTTCTCCAATGTCCCTTGCAGGTTGTTTGTGGC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATAAAGACTAAGTTCTCCAATGTCCCTTGCAGGTTGTTTGTGGC  545

seq1  CCTGTGATTGATTCCTGACAAATGGGATGCTCAAAGATCCTTACGAATCC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATTGATTCCTGACAAATGGGATGCTCAAAGATCCTTACGAATCC  595

seq1  CTTCTGGGAAATGTCCTTAAAGAGAATAAGATTGCCACTTGTTCCTTTCA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGAAATGTCCTTAAAGAGAATAAGATTGCCACTTGTTCCTTTCA  645

seq1  GCTGCTGGGAATGAGGGTTTGATTGGCTGTTTGATCCCACAGTGGTTTCT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGGAATGAGGGTTTGATTGGCTGTTTGATCCCACAGTGGTTTCT  695

seq1  GGTAAAGCTCGGATCAGCTCATTACTGGGCCAGAGCAATGAGCCTCTGAC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGCTCGGATCAGCTCATTACTGGGCCAGAGCAATGAGCCTCTGAC  745

seq1  TGTTGAAACGTCGGCGGCTCCCAGCTACTTTTCTCTAGTGAATTGAGCTT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAACGTCGGCGGCTCCCAGCTACTTTTCTCTAGTGAATTGAGCTT  795

seq1  TCTTTTTCAAAGGAGCAGGACAATTTCAAAATCTCATTGTTGGACTGTTA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCAAAGGAGCAGGACAATTTCAAAATCTCATTGTTGGACTGTTA  845

seq1  CGGGGGAAGCCGCGTTATGAGGAAGGCAGGCACAGTAGATAGAAGCACTC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGAAGCCGCGTTATGAGGAAGGCAGGCACAGTAGATAGAAGCACTC  895

seq1  TGCTGGCTGTTGCCTACCGTAGCCTTTCGAAGGCTTCTGTGTGAAGTGCC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTGTTGCCTACCGTAGCCTTTCGAAGGCTTCTGTGTGAAGTGCC  945

seq1  TTGTTAGTATGGAGACCTTACAATAACTTCATTCTCAAGTGAGAAAGGAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTATGGAGACCTTACAATAACTTCATTCTCAAGTGAGAAAGGAA  995

seq1  AAAGAAATGACTCCATGCTCGTGTGAAGGGCTGCAGACTCTGCTTACTAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGACTCCATGCTCGTGTGAAGGGCTGCAGACTCTGCTTACTAG  1045

seq1  AACATTTTTTTTCTAAGGCTGTCATCTAAGAGTAACTTTCAGCAGGCAGA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTTTTCTAAGGCTGTCATCTAAGAGTAACTTTCAGCAGGCAGA  1095

seq1  TCTTTAACCATCTGACCAGCTGCTTGGGACAACAGTGAGCTGTGGCTCTT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAACCATCTGACCAGCTGCTTGGGACAACAGTGAGCTGTGGCTCTT  1145

seq1  GTCCTCCGAGGTGGAATTC  1154
      |||||||||||||||||||
seq2  GTCCTCCGAGGTGGAATTC  1164

seq1: chr19_25817422_25818571
seq2: B6Ng01-320O08.g_71_1231

seq1  GAATTCTTTGTTCAGCTCTGAGCCCATTTTTTTAATGGGGTTATTCGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCATTTTTTTAATGGGGTTATTCGATT  50

seq1  TTCTGGAGCCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGCCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100

seq1  CTATCCAATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGCAGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGCAGTTTTA  200

seq1  TGAGGTCCCATTTGTCAATTCTCCATCTTACTAACCAGGATTCTTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTGTCAATTCTCCATCTTACTAACCAGGATTCTTTCATT  250

seq1  CTGGCTTGAAAAAAAAAAAACCTTGACTCATTTCTGGAATGTAGTCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGAAAAAAAAAAAACCTTGACTCATTTCTGGAATGTAGTCCAAT  300

seq1  GCACTCTTAGCTTTTCTCTTACTAGAAGAAATTTGTATTTAATTCTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTTAGCTTTTCTCTTACTAGAAGAAATTTGTATTTAATTCTCTTT  350

seq1  TCTGAACAACAGTGTAACTGAGAATATTCTTGGTTGGGCTTAACACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACAACAGTGTAACTGAGAATATTCTTGGTTGGGCTTAACACTTAT  400

seq1  TCCTGAGAATTCTTCTTGTGGCCACATAAAATTCCGAGATGTCATAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAATTCTTCTTGTGGCCACATAAAATTCCGAGATGTCATAGGTT  450

seq1  TCTTATCTCTCGTGGCTCTTGAACATTTTTTTCTTTGTCTTTTCTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTCTCGTGGCTCTTGAACATTTTTTTCTTTGTCTTTTCTTTTAT  500

seq1  GTTTTTCAGTGCTAGGGGTTGAGCCTAGAACTTCATTTGTATAAAGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAGTGCTAGGGGTTGAGCCTAGAACTTCATTTGTATAAAGCAAG  550

seq1  AACTCTACTACTGACCTAGCCTCACCGTTGCATATGATTTGTGATAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACTACTGACCTAGCCTCACCGTTGCATATGATTTGTGATAGCTT  600

seq1  ATATGGTTTGTTAAATTGATAATTTGGTGGGAGAGCTTTATTCACTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTTGTTAAATTGATAATTTGGTGGGAGAGCTTTATTCACTTGCT  650

seq1  ATGTATGGATATTGCCACATACCCCCCCAGACTTGGGAAGGGCTGAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGATATTGCCACATACCCCCCCAGACTTGGGAAGGGCTGAGTCT  700

seq1  TCATCCTTTTCTTTTTCACCTGTAATTCTTGTTGTGGGACTGTTAGTTCC  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCATCCTTTTCTTTTTCACCTGTAATTCTTGTTGTGAGACTGTTAGTTCC  750

seq1  CTTGGTGGTGCCTCATA-TTTCCTATAGGCTTTTGCTATGCTCCAAGTAG  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTGGTGGTGCCTCATATTTTCCTATAGGCTTTTGCTATGCTCCAAGTAG  800

seq1  GATTTGAGCTCCCAAAACTCACACTGAGGCTTA-TTTTATTAATGCAGCT  848
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GATTTGAGCTCCCAAAACTCACACTGAGGCTTATTTTTATTAATGCAGCT  850

seq1  GTGCCAGGAAGCAGGACTTTTGGGGAAGTGA-TTATGACACGAAGATATT  897
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGCCAGGAAGCAGGACTTTTGGGGAAGTGATTTATGACACGAAGATATT  900

seq1  GGTCATTG-TTTTTCTTAAGAGGCT-GGATTAAGTGTCAGGAGACTT-GG  944
      |||||||| |||||||||||||||| ||||||||||||| ||||||| ||
seq2  GGTCATTGTTTTTTCTTAAGAGGCTGGGATTAAGTGTCA-GAGACTTGGG  949

seq1  TTAGGTC-TTGTAGGTATAAACTACAGTTCAGTCATTTAGTC-TTTATCT  992
      ||||||| |||||||||| ||||||||||||||||||||||| |||||||
seq2  TTAGGTCTTTGTAGGTATTAACTACAGTTCAGTCATTTAGTCTTTTATCT  999

seq1  CCAGGGTTTAAGAAAATTATTTCTATTTTTAGAAAGATTTATTTATTTAT  1042
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTTAAGAAAATTATTTCTATTTTTAGAAAGATTTATTTATTTAT  1049

seq1  TATATATGAGT--ACACTGTTGCTGTCTAGAAA-CACA-GCAGAGGAGGG  1088
      ||||| |||||   |||||| |||||||||||| |||| |||||||| ||
seq2  TATATTTGAGTTACCACTGTGGCTGTCTAGAAACCACAGGCAGAGGA-GG  1098

seq1  AATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTAGGAA  1138
       ||| |||||||||||  |||||| |||| || ||||| |||||||||||
seq2  CATCGGATCTCATTACGAATGGTTTTGAGTCA-CATGT-GTTGCTAGGAA  1146

seq1  TT--GAAC-TCAGGA  1150
      ||  |||| ||||||
seq2  TTTGGAACTTCAGGA  1161