BAC Information

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BAC

Clone NameB6Ng01-321J07
Chromosome19 (Build37)
Map Location 27,472,960 - 27,474,091
singlet/doubletsinglet
Overlap geneD19Bwg1357e
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2
Downstream geneLOC667868, LOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321J07.bB6Ng01-321J07.g
ACCGA110646GA110647
length1,118446
definitionB6Ng01-321J07.b B6Ng01-321J07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatagtctcaagagcttactttgaaggaaatggcagtatctggc
tgaaagaacacagctgaacctggcacacagtaggcattcaagtgaatagt
ttgctttttgttttactttactttcagagttgtcagtatcttatacttaa
atgtcctgagagcatctataaagtactctgaacacgtcctgtctcacatg
atgacttgccactacttggttgaagattggcaggattgggaatggttggt
tactcgtttgtgactgtggtgtagaaagcagcttcctttattgaagtctt
gctccatgccagatagtgttcagatcctggggatggaaagatgacaccta
gtctgcccttgactcactcactgtccacatgctcggcaggactgacagtt
acaggagatagtgccctgggttatgataagctcctggaggtttgtgataa
caagactggtcacttagcttaccacctcactcaacatattccgacagcaa
gaaggacactgcaatccgccggcgtgagctcttggagtccatctctccag
ctttgctgagctacctgcaaggacacactcaagaggtggtgctggataag
tctgcatgtgtgctggtgtctgacatgctgggatctgctactggagatgt
tcagcctgctatggatgccatcgccagtttggcagcagcagaactgcatc
ctggtggcaaggacggagaggtgatgtactgtgattatagtaggagagcc
ccagggcctatagtatctccagatgtggattctgcagagggtcaacagtc
atgccagtagtacatttaaaaacggtaactcagagtgccggtggtagcac
ttgtcttccccagaatgcagagatcctgtagtgcctacagacatgtgcta
tgacttatggttatctgtgattgccccttcactacctttccagagtagtc
catgcttgctgtggcagctgctttctgtgtgtgaagtgctgtttgtcctg
tgctcatccattcaaagctaatgcattcagtgcccatagttctctgaagt
cttccctattttgtttgactcataaaagactcactcagcggtgcaataca
caaacctaggcttagact
ccagaaacagaattagctggttcaagacatcaaggacagtgttcattgcc
tgcccccctttctcctttacaccccccccattaattctctttcttccctg
atctcatgtctctattcctctctctctctctctctctctctctctctctc
tctctctctctctctctctctcacacacacacacacacacacaatatata
ttaaaaacatatttcactataaacagggagagggtcgaggaaatagaggg
catgtgagagtgcgtgagagggggcgggggagaggcctccaacaacgagg
aaaatagagaaagggtctataaatgtgtttatttttaatctttttcttag
tctttttcttaagcatatatatggggggggggggggtgtggataaaaatg
tatgcctcaaacctttcccgtttgtgttgcacacactaacactctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27472960_27474091
seq2: B6Ng01-321J07.b_46_1163 (reverse)

seq1  AGTCTAAAGCCTAGGTTTGTGGTTATGCACCCGGCTGAGTGAGTCTTTTT  50
      ||||| |||||||||||||| ||  ||||||  |||||||||||||||| 
seq2  AGTCT-AAGCCTAGGTTTGT-GTATTGCACC--GCTGAGTGAGTCTTTT-  45

seq1  TAATGAGTCAAACAAAATTAGGGAAGACTTCAAGGAGAACTATGGGCACT  100
        ||||||||||||||| ||||||||||||||  ||||||||||||||||
seq2  --ATGAGTCAAACAAAA-TAGGGAAGACTTCA--GAGAACTATGGGCACT  90

seq1  GGAATGCATTAGGCTTTGAATGGATGGAGCACAGGACAAACAGCACTTCA  150
       |||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  -GAATGCATTA-GCTTTGAATGGAT-GAGCACAGGACAAACAGCACTTCA  137

seq1  CACCACAGGAAGCAGCTGCCACAGCAAGCATGGACTACTCTGGAAAGGTA  200
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CA-CACAGAAAGCAGCTGCCACAGCAAGCATGGACTACTCTGGAAAGGTA  186

seq1  GTGAAGGGGCAATCACAGATAACCATAAGTCATAGCACATGTCTGTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGGCAATCACAGATAACCATAAGTCATAGCACATGTCTGTAGGC  236

seq1  ACTACAGGATCTCTGCATTCTGGGGAAGACAAGTGCTACCACCGGCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGATCTCTGCATTCTGGGGAAGACAAGTGCTACCACCGGCACTC  286

seq1  TGAGTTACCGTTTTTAAATGTACTACTGGCATGACTGTTGACCCTCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACCGTTTTTAAATGTACTACTGGCATGACTGTTGACCCTCTGCA  336

seq1  GAATCCACATCTGGAGATACTATAGGCCCTGGGGCTCTCCTACTATAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCACATCTGGAGATACTATAGGCCCTGGGGCTCTCCTACTATAATC  386

seq1  ACAGTACATCACCTCTCCGTCCTTGCCACCAGGATGCAGTTCTGCTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACATCACCTCTCCGTCCTTGCCACCAGGATGCAGTTCTGCTGCTG  436

seq1  CCAAACTGGCGATGGCATCCATAGCAGGCTGAACATCTCCAGTAGCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGGCGATGGCATCCATAGCAGGCTGAACATCTCCAGTAGCAGAT  486

seq1  CCCAGCATGTCAGACACCAGCACACATGCAGACTTATCCAGCACCACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATGTCAGACACCAGCACACATGCAGACTTATCCAGCACCACCTC  536

seq1  TTGAGTGTGTCCTTGCAGGTAGCTCAGCAAAGCTGGAGAGATGGACTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGTGTCCTTGCAGGTAGCTCAGCAAAGCTGGAGAGATGGACTCCA  586

seq1  AGAGCTCACGCCGGCGGATTGCAGTGTCCTTCTTGCTGTCGGAATATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCACGCCGGCGGATTGCAGTGTCCTTCTTGCTGTCGGAATATGTT  636

seq1  GAGTGAGGTGGTAAGCTAAGTGACCAGTCTTGTTATCACAAACCTCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGTGGTAAGCTAAGTGACCAGTCTTGTTATCACAAACCTCCAGG  686

seq1  AGCTTATCATAACCCAGGGCACTATCTCCTGTAACTGTCAGTCCTGCCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATCATAACCCAGGGCACTATCTCCTGTAACTGTCAGTCCTGCCGA  736

seq1  GCATGTGGACAGTGAGTGAGTCAAGGGCAGACTAGGTGTCATCTTTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGACAGTGAGTGAGTCAAGGGCAGACTAGGTGTCATCTTTCCAT  786

seq1  CCCCAGGATCTGAACACTATCTGGCATGGAGCAAGACTTCAATAAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGATCTGAACACTATCTGGCATGGAGCAAGACTTCAATAAAGGAA  836

seq1  GCTGCTTTCTACACCACAGTCACAAACGAGTAACCAACCATTCCCAATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTCTACACCACAGTCACAAACGAGTAACCAACCATTCCCAATCC  886

seq1  TGCCAATCTTCAACCAAGTAGTGGCAAGTCATCATGTGAGACAGGACGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATCTTCAACCAAGTAGTGGCAAGTCATCATGTGAGACAGGACGTG  936

seq1  TTCAGAGTACTTTATAGATGCTCTCAGGACATTTAAGTATAAGATACTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTACTTTATAGATGCTCTCAGGACATTTAAGTATAAGATACTGA  986

seq1  CAACTCTGAAAGTAAAGTAAAACAAAAAGCAAACTATTCACTTGAATGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGAAAGTAAAGTAAAACAAAAAGCAAACTATTCACTTGAATGCC  1036

seq1  TACTGTGTGCCAGGTTCAGCTGTGTTCTTTCAGCCAGATACTGCCATTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTGCCAGGTTCAGCTGTGTTCTTTCAGCCAGATACTGCCATTTC  1086

seq1  CTTCAAAGTAAGCTCTTGAGACTATGGAATTC  1132
      ||||||||||||||||||||||||||||||||
seq2  CTTCAAAGTAAGCTCTTGAGACTATGGAATTC  1118