BAC Information

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BAC

Clone NameB6Ng01-324C14
Chromosome19 (Build37)
Map Location 39,000,864 - 39,071,459
singlet/doubletdoublet
Overlap geneHells, LOC209753
Upstream geneFer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12
Downstream geneCyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324C14.bB6Ng01-324C14.g
ACCGA112548GA112549
length505436
definitionB6Ng01-324C14.b B6Ng01-324C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,000,864 - 39,001,374)(39,071,027 - 39,071,459)
sequence
tacattgtagctcagactgcttccaaactcttatcttccttgcctccagc
tctagcgtgctggctaggcatgcatcaccacacctgtctgtcttgatatc
ttttatgacaggggcctcacctaggtcaggctgctctcagattttctgtg
tagactgtttctatgtggctgatgaggctggccgtgaatgctgcatgtct
gcacttcattgctatgggtcaccacactgggagacctggtgtagattttg
atgcaagcagaggacattctttgcttttaggttgggggaagctatgatct
gcttagaacacatcccaaaggttttacctgatagaaggagcttagatgga
gatggtacaattggctgtcaaggagacgaaagacagacagtaactctggc
tctgcgtctgcatctttctttccatttcactgtttgtttgtatttccatt
tgttcttgccagtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtg
ccttggctgttgaatgtctgtgtgttcttatctaaaaattccgaatgagt
agtaattgaattcccttggctgttgaatgtctgtgtgttcttatctaaaa
attccgaatgattctctgtgttttcttcatatgacaaatgcactcacaga
aacatttctttaaatgtcttgggcaatttgtatgcacattcagaggttat
tggcatttctgttgttttatgattctatttacgaacaatttctcaaagtt
ccttttaaaggagatgaggactcacttatttattgctacatataaaatag
acaacatccccaaacaacagactctctctctctctctccctttccctctc
tctctctccctttccctctttctctctctccctttccctctctctctctc
tccctttctgtctttctgttctctctctctcactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_39000864_39001374
seq2: B6Ng01-324C14.b_46_556

seq1  GAATTCTACATTGTAGCTCAGACTGCTTCCAAACTCTTATCTTCCTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTGTAGCTCAGACTGCTTCCAAACTCTTATCTTCCTTGCC  50

seq1  TCCAGCTCTAGCGTGCTGGCTAGGCATGCATCACCACACCTGTCTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCTAGCGTGCTGGCTAGGCATGCATCACCACACCTGTCTGTCTT  100

seq1  GATATCTTTTATGACAGGGGCCTCACCTAGGTCAGGCTGCTCTCAGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTTTATGACAGGGGCCTCACCTAGGTCAGGCTGCTCTCAGATTT  150

seq1  TCTGTGTAGACTGTTTCTATGTGGCTGATGAGGCTGGCCGTGAATGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGACTGTTTCTATGTGGCTGATGAGGCTGGCCGTGAATGCTGC  200

seq1  ATGTCTGCACTTCATTGCTATGGGTCACCACACTGGGAGACCTGGTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCACTTCATTGCTATGGGTCACCACACTGGGAGACCTGGTGTAG  250

seq1  ATTTTGATGCAAGCAGAGGACATTCTTTGCTTTTAGGTTGGGGGAAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATGCAAGCAGAGGACATTCTTTGCTTTTAGGTTGGGGGAAGCTA  300

seq1  TGATCTGCTTAGAACACATCCCAAAGGTTTTACCTGATAGAAGGAGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGCTTAGAACACATCCCAAAGGTTTTACCTGATAGAAGGAGCTTA  350

seq1  GATGGAGATGGTACAATTGGCTGTCAAGGAGACGAAAGACAGACAGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGATGGTACAATTGGCTGTCAAGGAGACGAAAGACAGACAGTAAC  400

seq1  TCTGGCTCTGCGTCTGCATCTTTCTTTCCATTTCACTGTTTGTTTGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTGCGTCTGCATCTTTCTTTCCATTTCACTGTTTGTTTGTATT  450

seq1  TCCATTTGTTCTTGCCAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGTTCTTGCCAGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  500

seq1  GTGTGTGTGTG  511
      |||||||||||
seq2  GTGTGTGTGTG  511

seq1: chr19_39071027_39071459
seq2: B6Ng01-324C14.g_66_507 (reverse)

seq1  ------AGAGAGAGAG---AGAGAGAGAGAAAGGGAGAGAGAGAGAGAGG  41
            ||||||||||   ||| ||| |||||||||||||||||||||||
seq2  AGAGTGAGAGAGAGAGAACAGAAAGACAGAAAGGGAGAGAGAGAGAGAGG  50

seq1  GAAAGGGAGAGAGAGAAAGAGGGAAAGGGAGAGAGAGAGAGGGAAAGGGA  91
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAGAGAGAGAAAGAGGGAAAGGGAGAGAGAGAGAGGGAAAGGGA  100

seq1  GAGAGAGAGAGAGAGTCTGTTGTTTGGGGATGTTGTCTATTTTATATGTA  141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGTCTGTTGTTTGGGGATGTTGTCTATTTTATATGTA  150

seq1  GCAATAAATAAGTGAGTCCTCATCTCCTTTAAAAGGAACTTTGAGAAATT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAATAAGTGAGTCCTCATCTCCTTTAAAAGGAACTTTGAGAAATT  200

seq1  GTTCGTAAATAGAATCATAAAACAACAGAAATGCCAATAACCTCTGAATG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTAAATAGAATCATAAAACAACAGAAATGCCAATAACCTCTGAATG  250

seq1  TGCATACAAATTGCCCAAGACATTTAAAGAAATGTTTCTGTGAGTGCATT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACAAATTGCCCAAGACATTTAAAGAAATGTTTCTGTGAGTGCATT  300

seq1  TGTCATATGAAGAAAACACAGAGAATCATTCGGAATTTTTAGATAAGAAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATGAAGAAAACACAGAGAATCATTCGGAATTTTTAGATAAGAAC  350

seq1  ACACAGACATTCAACAGCCAAGGGAATTCAATTACTACTCATTCGGAATT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACATTCAACAGCCAAGGGAATTCAATTACTACTCATTCGGAATT  400

seq1  TTTAGATAAGAACACACAGACATTCAACAGCCAAGGGAATTC  433
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATAAGAACACACAGACATTCAACAGCCAAGGGAATTC  442