BAC Information

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BAC

Clone NameB6Ng01-324E03
Chromosome19 (Build37)
Map Location 54,823,428 - 54,823,966
singlet/doubletsinglet
Overlap genenone
Upstream geneRbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a, LOC100043004
Downstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324E03.bB6Ng01-324E03.g
ACCGA112620GA112621
length1,1491,220
definitionB6Ng01-324E03.b B6Ng01-324E03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactgtcactaaaaatcaactacttcgaagaaggaggcactaaa
gacactttatgaataactcaaaacaaatcatggatcttaatgcaagactt
gaaatactgaaacttctagaataatatataggaacaatctgttacaaccc
tagtttggggaaagatgacccagatatatcaccaatagtgtgatcaataa
aaataaagcataattaatttgaactttattagaatcaggaacttctagtc
tctgaaagtcactgttggcatggagaaaaacgttgtaaaaatttggtgtt
ttaaagaacatatgtccacattaggtaaaggatatttaaatctcaatgat
aagaaaaaaagtataattaaaatagacaaaatgtttgaacagctacttta
tcctaggagataagatgaaaagcagggatacagaaagactctcaatgcag
ttggacataaagggcataaaggaaatgctacatgtgtctgaaattgtccc
aaattgaaaataccgtaccaaatgttggtgtggttgtagaaaacctagaa
agccctcacctgaagggagaaattgctgatcctctctgaacttcttgcta
ccacccacaaaaattctctggattctcgaatgaaagatggacagacaggc
agaccaaccgaccaaccaacacacacacacacacacacacacacacacac
atacacacacacacacagaccacatccttatgtatagtatgttctaagca
gctcaaaggctgggccattcttgctaccccagacccaattggggaagtgg
tccctgaggctgcctccctgattcttacatggctgcaggctttctctcct
gctccctcaagtctgatctctctgcttccctatcaaaactccttctttcc
tacttccttgcccacggaaatctaaagtcccgcctctgtctccctgccca
gcattagctgtggccactttattttaccaaccaaagccaacttggacagg
aaacttcagtgtgttacagacagacatgccagttcccatgtaatttggga
agccgaataacaactctcttagaatccagtaatttcacttgtccaacacc
tctgcctgaatcctctgtgtcaaaccatatctgactgatttaacttttc
gaattctgaggacttttcagaggatatataaatgataaggccctgagagg
tggggtgggttattggttgttggttggttgctattgtttgcagttccttg
tagtatgttaagtagtaatgtacaaagaagaaacaacgaaaagaaagtag
atatcatgactccgaagagcaaacttgccccaaggaactcaatgccctta
gtctggaggaagtagtctaatgacaacatcccccttccctccccctctat
tattttttctctcttaactagtgtcagggagctgaatgggtggagaaggg
taccaaggaccagcctctgcttggagaggggttctgaggaaggggtgtct
gggagcagcacaagaatgacttgaagtcaaaatatggggtacaagctggc
agccagtgttctgcttgagatatctttctcttgcacttctaaaaacctct
ctgggtagctcatctcttgtaggcctaaagcccagtcttttctttatgca
ttaattcagtcattaccccaggttccctttaggttatcccatcaattagc
ctttcatgacaccatctccttgattcttagaaagagacagcaagcatatt
ttttttttaacatggcaagtgaattcagagatctgcctgcctttgtaggc
acagacaatggactagctgggtaggatcctggactgagattaccattttc
caccatgcctaggtccagcctagctctgtcccaggctgacactgaactca
ggaaatctgcctgcctttgtatcttcctgcctttatattttttctggcaa
gctggcttcacattacagctgcttctgttctttttagttctgtgaagcat
ccttatatttttacataatttgagaaaatgatatattctttaactcatgt
ctttcagatttattagtaccctgaagcttctccacatttactaatcttgc
tgaacatagctgtaccctcacttcctgggatttgtcctctgattatcatg
gagttatatcttaaggagagaggacacttctttgtagaatgaacatgaaa
atattgcacattctattcctacacaaaacaggcttacgattcccaacaat
tcatcaacacttattggaggccttaacctgaatagcctctctggttcaag
agtggaccaattccaacccattcctttcacatgtcccagccagggacctc
gtgtgcacagataagatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_54823428_54823966
seq2: B6Ng01-324E03.b_665_1199 (reverse)

seq1  GAAAAGGTAAATCAGTCAGGGAATAT-GTTTGACACAGAGGATCCAAAGC  49
      |||||| ||||||||||||   |||| |||||||||||||||| |  || 
seq2  GAAAAGTTAAATCAGTCAG---ATATGGTTTGACACAGAGGATTC--AGG  45

seq1  CAGGAGGTG-TGGAC-AGTGAAA-TACTGGATCCT-AGAGAGTTGTTAAT  95
      || |||||| ||||| ||||||| |||||||| || ||||||||||| ||
seq2  CA-GAGGTGTTGGACAAGTGAAATTACTGGATTCTAAGAGAGTTGTT-AT  93

seq1  TCGGCTCCCAAAATTACATGGGAACTGGCATGTCTGTCTGTAACACACTG  145
      |||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTTCCCAAATTACATGGGAACTGGCATGTCTGTCTGTAACACACTG  143

seq1  AAGTTCCCTGTCCCAAGTTGGCTTTGGTTGGTAAAATAAAGTGGCCACAG  195
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCTGT-CCAAGTTGGCTTTGGTTGGTAAAATAAAGTGGCCACAG  192

seq1  CCTAATGCTGGGCAGGGAGACAGAGGCGGGACTTTAGATTTCCGTGGGCA  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTAATGCTGGGCAGGGAGACAGAGGCGGGACTTTAGATTTCCGTGGGCA  241

seq1  AGGAAGTAGGAAAGAAGGAGTTTTGATAGGGAAGCAGAGAGATCAGACTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAGGAAAGAAGGAGTTTTGATAGGGAAGCAGAGAGATCAGACTT  291

seq1  GAGGGAGCAGGAGAGAAAGCCTGCAGCCATGTAAGAATCAGGGAGGCAGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCAGGAGAGAAAGCCTGCAGCCATGTAAGAATCAGGGAGGCAGC  341

seq1  CTCAGGGACCACTTCCCCAATTGGGTCTGGGGTAGCAAGAATGGCCCAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGACCACTTCCCCAATTGGGTCTGGGGTAGCAAGAATGGCCCAGC  391

seq1  CTTTGAGCTGCTTAGAACATACTATACATAAGGATGTGGTCTGTGTGTGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCTGCTTAGAACATACTATACATAAGGATGTGGTCTGTGTGTGT  441

seq1  GTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTTGGTCG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTTGGTCG  491

seq1  GTTGGTCTGCCTGTCTGTCCATCTTTCATTCGAGAATCCAGAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCTGCCTGTCTGTCCATCTTTCATTCGAGAATCCAGAGA  535