BAC Information

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BAC

Clone NameB6Ng01-325A19
Chromosome19 (Build37)
Map Location 58,872,051 - 58,976,677
singlet/doubletdoublet
Overlap geneHspa12a
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik
Downstream gene6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325A19.bB6Ng01-325A19.g
ACCGA113208GA113209
length4571,053
definitionB6Ng01-325A19.b B6Ng01-325A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,976,215 - 58,976,677)(58,872,051 - 58,873,086)
sequence
tctgtttagttctatcccatttttaaattgcattatttgggttgttggta
tctaatttctgaacagagcaccaacagctcatgtcactaagatcaacaat
taatagacgggacctcttgagactgaaaagcttctgtaaggcaaagggca
ctgtcaataggacaaaacggcagcctacagattgggaaaaggacttcatc
aaccccacatctgacagagggctaatatccaaagtatataaagaactcaa
gaagttaggcaccaacaaaccttttaagcttttagataagctgttcatat
tcacaacaaataggaagataataaaagggaggtgtgtgtgaaaaccactt
tgtgtccccccacttcattctctcccaatgagatgaattttagtgatgtg
ctagaaccttccacctaagtctgcagagctgaatgtgtggagggggtgag
ggaggtt
gaattccagcagataagaaagagagttctgaagagataagaaggactatg
agtcagattcttgattctttaccctcatttggctcttgaatgttgaatgt
tggcaagtctagccttgcacaggaggaggaacacagaacctggccttggg
aggcttctttttcgtggttcctctcctgctgtcttttttccttctctgat
ccttcctgtgggggttaaaagggcaacagcctccgagggcaggtggacct
ccaaccctcttacctagagagcagagtgtaagtacaggcactcttccctg
agggaaatctgacagggattgttaaggccacacactgtggtctgtggtca
cttcagcttggagggaattctcacattccaacactacgactgcagaccca
gagtctggaagggattaggttcaggaccctgctcctgacaagcaccagcg
attctgaggctggagagccacaggcctgccttcacgggtctaggtttacg
tactgcttttaggtgaatgtgaaaagctgcaggtttgatggagacatttc
atggaatagaacctcctttaatatttccttatggtgggattaagaagagg
gggaaggaaagggttaactgaaaatgtgcatggttggcaaggctgttttg
aatttttagatataaacagagtaaactgaaactctattttctccaattaa
atttctgctaaggtcacctagaatcatgcatgatctctgaactcacgctt
cattgtttctgagaatcactttctgatctgggttttcattttactggggt
tttcatttaactggggtccaaaaatgcacagcggtgttgtgtagtaatca
gatatactgagatagaccaaattcggtatacatttttatcaaagtgtttt
catcactgttcctaatttgtcatttagtcactactgcttaatctcttact
actttattaaaattgaacttttgtcctaggtaatgtattatgtagaaaaa
aacatagtgataaagaataagggcttggaactatcttacccatttggtca
tcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58976215_58976677
seq2: B6Ng01-325A19.b_43_505 (reverse)

seq1  AACCTCCCTCACCCCCTCCACACATTCAGCTCTGCAGACTTAGGTGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCCTCACCCCCTCCACACATTCAGCTCTGCAGACTTAGGTGGAAG  50

seq1  GTTCTAGCACATCACTAAAATTCATCTCATTGGGAGAGAATGAAGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGCACATCACTAAAATTCATCTCATTGGGAGAGAATGAAGTGGGG  100

seq1  GGACACAAAGTGGTTTTCACACACACCTCCCTTTTATTATCTTCCTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAAAGTGGTTTTCACACACACCTCCCTTTTATTATCTTCCTATTT  150

seq1  GTTGTGAATATGAACAGCTTATCTAAAAGCTTAAAAGGTTTGTTGGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAATATGAACAGCTTATCTAAAAGCTTAAAAGGTTTGTTGGTGCC  200

seq1  TAACTTCTTGAGTTCTTTATATACTTTGGATATTAGCCCTCTGTCAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTTGAGTTCTTTATATACTTTGGATATTAGCCCTCTGTCAGATG  250

seq1  TGGGGTTGATGAAGTCCTTTTCCCAATCTGTAGGCTGCCGTTTTGTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGATGAAGTCCTTTTCCCAATCTGTAGGCTGCCGTTTTGTCCTA  300

seq1  TTGACAGTGCCCTTTGCCTTACAGAAGCTTTTCAGTCTCAAGAGGTCCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGTGCCCTTTGCCTTACAGAAGCTTTTCAGTCTCAAGAGGTCCCG  350

seq1  TCTATTAATTGTTGATCTTAGTGACATGAGCTGTTGGTGCTCTGTTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAATTGTTGATCTTAGTGACATGAGCTGTTGGTGCTCTGTTCAGA  400

seq1  AATTAGATACCAACAACCCAAATAATGCAATTTAAAAATGGGATAGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATACCAACAACCCAAATAATGCAATTTAAAAATGGGATAGAACT  450

seq1  AAACAGAGAATTC  463
      |||||||||||||
seq2  AAACAGAGAATTC  463

seq1: chr19_58872051_58873086
seq2: B6Ng01-325A19.g_67_1119

seq1  GAATTCCAGCAGATAAGAAAGAGAGTTCTGAAGAGATAAGAAGGACTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGATAAGAAAGAGAGTTCTGAAGAGATAAGAAGGACTATG  50

seq1  AGTCAGATTCTTGATTCTTTACCCTCATTTGGCTCTTGAATGTTGAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATTCTTGATTCTTTACCCTCATTTGGCTCTTGAATGTTGAATGT  100

seq1  TGGCAAGTCTAGCCTTGCACAGGAGGAGGAACACAGAACCTGGCCTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTCTAGCCTTGCACAGGAGGAGGAACACAGAACCTGGCCTTGGG  150

seq1  AGGCTTCTTTTTCGTGGTTCCTCTCCTGCTGTCTTTTTTCCTTCTCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTTTTTCGTGGTTCCTCTCCTGCTGTCTTTTTTCCTTCTCTGAT  200

seq1  CCTTCCTGTGGGGGTTAAAAGGGCAACAGCCTCCGAGGGCAGGTGGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGTGGGGGTTAAAAGGGCAACAGCCTCCGAGGGCAGGTGGACCT  250

seq1  CCAACCCTCTTACCTAGAGAGCAGAGTGTAAGTACAGGCACTCTTCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCTCTTACCTAGAGAGCAGAGTGTAAGTACAGGCACTCTTCCCTG  300

seq1  AGGGAAATCTGACAGGGATTGTTAAGGCCACACACTGTGGTCTGTGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATCTGACAGGGATTGTTAAGGCCACACACTGTGGTCTGTGGTCA  350

seq1  CTTCAGCTTGGAGGGAATTCTCACATTCCAACACTACGACTGCAGACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTGGAGGGAATTCTCACATTCCAACACTACGACTGCAGACCCA  400

seq1  GAGTCTGGAAGGGATTAGGTTCAGGACCCTGCTCCTGACAAGCACCAGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGAAGGGATTAGGTTCAGGACCCTGCTCCTGACAAGCACCAGCG  450

seq1  ATTCTGAGGCTGGAGAGCCACAGGCCTGCCTTCACGGGTCTAGGTTTACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGGCTGGAGAGCCACAGGCCTGCCTTCACGGGTCTAGGTTTACG  500

seq1  TACTGCTTTTAGGTGAATGTGAAAAGCTGCAGGTTTGATGGAGACATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTTTAGGTGAATGTGAAAAGCTGCAGGTTTGATGGAGACATTTC  550

seq1  ATGGAATAGAACCTCCTTTAATATTTCCTTATGGTGGGATTAAGAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAGAACCTCCTTTAATATTTCCTTATGGTGGGATTAAGAAGAGG  600

seq1  GGGAAGGAAAGGGTTAACTGAAAATGTGCATGGTTGGCAAGGCTGTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAAAGGGTTAACTGAAAATGTGCATGGTTGGCAAGGCTGTTTTG  650

seq1  AATTTTTAGATATAAACAGAGTAAACTGAAACTCTATTTTCTCCAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAGATATAAACAGAGTAAACTGAAACTCTATTTTCTCCAATTAA  700

seq1  ATTTCTGCTAAGGTCACCTAGAATCATGCATGATCTCTGAACTCACGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCTAAGGTCACCTAGAATCATGCATGATCTCTGAACTCACGCTT  750

seq1  CATTG-TTCTGAGAATCACTTTCTGATCTGGGTTTTCA-TTTACT-GGGT  797
      ||||| |||||||||||||||||||||||||||||||| |||||| ||||
seq2  CATTGTTTCTGAGAATCACTTTCTGATCTGGGTTTTCATTTTACTGGGGT  800

seq1  TTTCAATTAACTGGGGTCCAAAAATGCACAGCGGTGTTGTGTAGTAATCA  847
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTAACTGGGGTCCAAAAATGCACAGCGGTGTTGTGTAGTAATCA  850

seq1  GATATACTGAGATAGACCAAATTC-GTATACA-TTTTATCAAAGTGTTTT  895
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  GATATACTGAGATAGACCAAATTCGGTATACATTTTTATCAAAGTGTTTT  900

seq1  CATCACTG-TCCTAATTTGTCA-TTAGTCACTACTGC-TAATCTCTTACT  942
      |||||||| ||||||||||||| |||||||||||||| ||||||||||||
seq2  CATCACTGTTCCTAATTTGTCATTTAGTCACTACTGCTTAATCTCTTACT  950

seq1  ACTTTATT-AAATTGAAC-TTTGTCCTAGGT-ATGTA-TATGTAG-AAAA  987
      |||||||| ||||||||| |||||||||||| ||||| ||||||| ||||
seq2  ACTTTATTAAAATTGAACTTTTGTCCTAGGTAATGTATTATGTAGAAAAA  1000

seq1  AACATAGTG-TATAG-ATAA-GGTTTGGAACTATC-TACCCATTTGGTCA  1033
      ||||||||| || || |||| || ||||||||||| ||||||||||||||
seq2  AACATAGTGATAAAGAATAAGGGCTTGGAACTATCTTACCCATTTGGTCA  1050

seq1  TCC  1036
      |||
seq2  TCC  1053