BAC Information

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BAC

Clone NameB6Ng01-325O01
Chromosome19 (Build37)
Map Location 30,966,818 - 30,967,951
singlet/doubletsinglet
Overlap genePrkg1
Upstream geneIl33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1
Downstream geneLOC625995, Cstf2t, 8430431K14Rik, 1810073H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325O01.bB6Ng01-325O01.g
ACCGA113824GA113825
length1,2381,122
definitionB6Ng01-325O01.b B6Ng01-325O01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcatatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctcctccgttttttc
ttgaaggcacctcatagctttgagtttccctcttagaaaatgctttcatt
gtgtcccaaaggtttgggtacgttgtggccttcatttcattaaacttcta
aaagtcttaattcctttccttaattccttccttgaacaaggtatcatgag
aagaaagtgtggtcagttccatgtgaatgttgcttcgtgtatttatttgt
aattgagatcagccttaagtcatggcatccggatggaacatggatattac
aatattgggaactgctgtgagagccgtgatgatgctac
gaattcttcctataaacatgggtccaaaaggagtgaagacacaagtttag
gcaataaataagcttctaaaccttgtgaaatgttctcagaaaaatacaga
tttatagatgagaaaaaagtaaggttaaactcaaaggtcacatttgtttt
tggtcttaggtgtggtttattagctgttttaatattctgaagcatttctg
aaaaaagaataatctatatgcaggcaatattcactgtaatttttgttagt
tgtatcgaagctcttgacttccatctcgtgaaagactgaagccaaatcca
ggggtgtgacaggttcttgtcctttctcatatcttttcaaattttcttgt
acttctgtccggtcttgattttagtggttgacatcattctctgtaggtaa
tgaacatgcaagttttgattcaagttgaaacttgaagaatttgttccatt
ttgtgaaggaagcataggttcaataataggaatcctggaatggttactgg
agaagacaaagctgaccactaaaataggatattatagttcaagtaggaaa
tgcagggaaattggtttaaatcactgtcaggaaaccagacattcactgaa
catactgggatggccctcagttccagagtacttgctaagcacgatgagag
ctctgtctatactgcatagacgaaaaatcagacaaattcctgaccgggta
tggtggtccctggctatccagcactgagaagtatggacagaaacattatg
agtcttaagacaatcttgaaacagtaaattcaaagctatccaagactaca
gtgtcagatggtgtatcaacaaagaaacaccagaggataggaaggaggag
gatgagaaggtcaatagaagaagtgaattcgggaatttgggaaggttatt
cagttgccctgcagaaagccaagagacagacaacatagattatggtaaca
tctcaggcagtgtttgcttatgttttcttttactgagatgtatttattca
gttgtctcaaactagagtgtaagatgaaaccataaaaatggtcaccggtc
attcctccatgagttaacattctaaaaagggagagtctcacaatcatcag
tacaagaaaaacatacctgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_30966818_30967951
seq2: B6Ng01-325O01.g_67_1188 (reverse)

seq1  CCTCAGTTATG-TTTTCTTGTAACTGATTGATTGTGAAGAACTCTCCCTT  49
      |||||| |||| ||||||||| ||||| |||||||||   ||||||||||
seq2  CCTCAGGTATGTTTTTCTTGT-ACTGA-TGATTGTGA--GACTCTCCCTT  46

seq1  TTTAGAATGTAAACTCCATGAGGAATTGACC-GTGACCATTTTTTAATTG  98
      |||||||||| |||||   |||||| ||||| ||||||||||||  || |
seq2  TTTAGAATGTTAACTCATGGAGGAA-TGACCGGTGACCATTTTT--ATGG  93

seq1  TTTCATCTTTACACTCTAGTTTGAAGACCAACTGAATAAATACATCTTCA  148
      ||||||| ||||||||||||||| ||| |||||||||||||||||| |||
seq2  TTTCATC-TTACACTCTAGTTTG-AGA-CAACTGAATAAATACATC-TCA  139

seq1  GTTAAAAGAAAACATAAGCAAACAACCTGCCCTGAGATGTTACCATAATC  198
      | ||||||||||||||||||||||  ||| ||||||||||||||||||||
seq2  G-TAAAAGAAAACATAAGCAAACA--CTG-CCTGAGATGTTACCATAATC  185

seq1  TATGTTGTCTGTCTCTTGGCTTTCTGCAGGGCAACTGAATAACCTT-CCA  247
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATGTTGTCTGTCTCTTGGCTTTCTGCAGGGCAACTGAATAACCTTCCCA  235

seq1  AATTCCCGAATTCACTTCTTCTATTGACCTTCTCATCCTCCTCCTTCCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCGAATTCACTTCTTCTATTGACCTTCTCATCCTCCTCCTTCCTA  285

seq1  TCCTCTGGTGTTTCTTTGTTGATACACCATCTGACACTGTAGTCTTGGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGTGTTTCTTTGTTGATACACCATCTGACACTGTAGTCTTGGAT  335

seq1  AGCTTTGAATTTACTGTTTCAAGATTGTCTTAAGACTCATAATGTTTCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGAATTTACTGTTTCAAGATTGTCTTAAGACTCATAATGTTTCTG  385

seq1  TCCATACTTCTCAGTGCTGGATAGCCAGGGACCACCATACCCGGTCAGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTTCTCAGTGCTGGATAGCCAGGGACCACCATACCCGGTCAGGA  435

seq1  ATTTGTCTGATTTTTCGTCTATGCAGTATAGACAGAGCTCTCATCGTGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTGATTTTTCGTCTATGCAGTATAGACAGAGCTCTCATCGTGCT  485

seq1  TAGCAAGTACTCTGGAACTGAGGGCCATCCCAGTATGTTCAGTGAATGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGTACTCTGGAACTGAGGGCCATCCCAGTATGTTCAGTGAATGTC  535

seq1  TGGTTTCCTGACAGTGATTTAAACCAATTTCCCTGCATTTCCTACTTGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCTGACAGTGATTTAAACCAATTTCCCTGCATTTCCTACTTGAA  585

seq1  CTATAATATCCTATTTTAGTGGTCAGCTTTGTCTTCTCCAGTAACCATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATATCCTATTTTAGTGGTCAGCTTTGTCTTCTCCAGTAACCATTC  635

seq1  CAGGATTCCTATTATTGAACCTATGCTTCCTTCACAAAATGGAACAAATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTCCTATTATTGAACCTATGCTTCCTTCACAAAATGGAACAAATT  685

seq1  CTTCAAGTTTCAACTTGAATCAAAACTTGCATGTTCATTACCTACAGAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTTTCAACTTGAATCAAAACTTGCATGTTCATTACCTACAGAGA  735

seq1  ATGATGTCAACCACTAAAATCAAGACCGGACAGAAGTACAAGAAAATTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCAACCACTAAAATCAAGACCGGACAGAAGTACAAGAAAATTTG  785

seq1  AAAAGATATGAGAAAGGACAAGAACCTGTCACACCCCTGGATTTGGCTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATGAGAAAGGACAAGAACCTGTCACACCCCTGGATTTGGCTTC  835

seq1  AGTCTTTCACGAGATGGAAGTCAAGAGCTTCGATACAACTAACAAAAATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCACGAGATGGAAGTCAAGAGCTTCGATACAACTAACAAAAATT  885

seq1  ACAGTGAATATTGCCTGCATATAGATTATTCTTTTTTCAGAAATGCTTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAATATTGCCTGCATATAGATTATTCTTTTTTCAGAAATGCTTCA  935

seq1  GAATATTAAAACAGCTAATAAACCACACCTAAGACCAAAAACAAATGTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAAAACAGCTAATAAACCACACCTAAGACCAAAAACAAATGTGA  985

seq1  CCTTTGAGTTTAACCTTACTTTTTTCTCATCTATAAATCTGTATTTTTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGTTTAACCTTACTTTTTTCTCATCTATAAATCTGTATTTTTCT  1035

seq1  GAGAACATTTCACAAGGTTTAGAAGCTTATTTATTGCCTAAACTTGTGTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATTTCACAAGGTTTAGAAGCTTATTTATTGCCTAAACTTGTGTC  1085

seq1  TTCACTCCTTTTGGACCCATGTTTATAGGAAGAATTC  1134
      |||||||||||||||||||||||||||||||||||||
seq2  TTCACTCCTTTTGGACCCATGTTTATAGGAAGAATTC  1122