BAC Information

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BAC

Clone NameB6Ng01-327M08
Chromosome19 (Build37)
Map Location 17,282,540 - 17,391,341
singlet/doubletdoublet
Overlap geneA230083H22Rik
Upstream geneGnaq, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327M08.bB6Ng01-327M08.g
ACCGA115219GA115220
length1,092814
definitionB6Ng01-327M08.b B6Ng01-327M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,390,281 - 17,391,341)(17,282,540 - 17,283,350)
sequence
gaattcttcaacttatagtgttggaagacaagaagccagggaagagattg
gtttcagttttggtcagagatgggttggcagtgggtagagggtaataaag
aggttcacaactggtcaaagtcccgtgtataagtagctgtggctgctcat
ctgtggatgaatcatctatatcaactccaaggctcagggaacagcacaga
agaggggaagagaagaatggaaaatctggaggatggatgagagagctgtg
aaatgatagcttctaaacatggcatggctgtaatatacaccaactctcag
atgccatggtaacctgagtaagaccttcgcaagatccatctagtcaaaat
tccagcatggctggccaaggagcctccaaggcccagtcctcagcagaggc
acctttgtttcttgatggttattaaggggaggagagtcaatatcctttgg
gaatgtggccacattcatgtcccaaggcacatgggtgccacacccatagg
caaaatctatcatcccatacctgctccttaaatatagagattatttccaa
agatactgattcctaagagtgacagtaggcttggttttgttttctacttt
agtataatatttttagactaggtcctgctcaaaaattcagaacatggcag
atgctgctttgccagaacgttaagtgaacaacctctcatctacttcctga
tggtgtccttgttctcccacacctcatgagtcctgcttcactgtgcatag
ttctcagggcagtctagtcttgaaaattcacattacaatggtgtgttaaa
ctctaacaattagaacattctaattgttttctagcctcaaactatgtatt
cctcctgcaaaccagttccctagaaaccacgtggtcagactcagtggagc
agccttcccaccgacagggtcaattgtgttttatttagacactcttcttg
ttgttgacgcccaaaaaccttaggaagaagcatcctaagagagatgttgc
agttggggcgtggtgcgcacgctttaatcccagcactcgggagcagagca
gcgattttctgagttcgaggtcaactgtctacgagtgagttc

gaattcaggatgtgggtataggtcagagtggatgcttaacatgtgttaga
gcctgggttttgtccccactgataataatatagaaaagaacagcaagaag
gctttcggggaaagacagcagctttaggagggaagtgtagtgactgatga
tgtaagtctcttttcctttttcttcttccagctctaaattcagcagtaaa
attaaatatgtgactagcttatctgagctcagtggcctgatccccatgga
ctgcatccacattccagagagcatcatcaagtgagtatgagggctttgaa
gcgctggtagctggtgagaaagaagtcgcaccagaggagggggatgggaa
aacaagcccttctagaatgatggggaatgtcatcttatttctaaaggaga
taggtattatctaataaataaagctttggctctaacctaaaaattgctat
tctttcagatcctcttttgtatggcttgtaacgattaattattgactttt
actttttatttcatacaatatatttgatcatatcttttcaaccaagatta
gctattgacattttttaccttgaaatttgtttccaccctggagacaccac
tagtatgaactacaacgtttatacctgttacactgtactttacattaagg
ttttcccatattttagatttttttccttaagtaattttgtctacatgagc
ccagaagatagataaaaagaaaaactgtttttctccaaatccctccccac
caatgcctttagagggaagattagatggagaccctttgttgaggagtggg
tgggtttgtgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17390281_17391341
seq2: B6Ng01-327M08.b_80_1137 (reverse)

seq1  GAACTCACTCTGTAGACCAGGTTGACCTCGAACTCAGAAATCCGCCTGCC  50
      |||||||||| ||||||   ||||||||||||||||||||  || ||| |
seq2  GAACTCACTC-GTAGAC--AGTTGACCTCGAACTCAGAAAATCG-CTG-C  45

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACG-CCCAACT  99
      |||| ||||||||||||||||||||| ||||||| ||||||| |||||||
seq2  TCTG-CTCCCGAGTGCTGGGATTAAA-GCGTGCG-CACCACGCCCCAACT  92

seq1  GCAACATCTCTCTTAGGATGCTTCTTCCT-AGGTTTTT-GGCGTCAACAA  147
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  GCAACATCTCTCTTAGGATGCTTCTTCCTAAGGTTTTTGGGCGTCAACAA  142

seq1  CAAGAAGAGTGTCTAA--TAAACACAATTGACCCTGTCGGTGGGAAGGCT  195
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  CAAGAAGAGTGTCTAAATAAAACACAATTGACCCTGTCGGTGGGAAGGCT  192

seq1  GCTCCACTGAGTCTGACCACGTGGTTTCTAGGGAACTGGTTTGCAGGAGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACTGAGTCTGACCACGTGGTTTCTAGGGAACTGGTTTGCAGGAGG  242

seq1  AATACATAGTTTGAGGCTAGAAAACAATTAGAATGTTCTAATTGTTAGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAGTTTGAGGCTAGAAAACAATTAGAATGTTCTAATTGTTAGAG  292

seq1  TTTAACACACCATTGTAATGTGAATTTTCAAGACTAGACTGCCCTGAGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACACACCATTGTAATGTGAATTTTCAAGACTAGACTGCCCTGAGAA  342

seq1  CTATGCACAGTGAAGCAGGACTCATGAGGTGTGGGAGAACAAGGACACCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCACAGTGAAGCAGGACTCATGAGGTGTGGGAGAACAAGGACACCA  392

seq1  TCAGGAAGTAGATGAGAGGTTGTTCACTTAACGTTCTGGCAAAGCAGCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGTAGATGAGAGGTTGTTCACTTAACGTTCTGGCAAAGCAGCAT  442

seq1  CTGCCATGTTCTGAATTTTTGAGCAGGACCTAGTCTAAAAATATTATACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGTTCTGAATTTTTGAGCAGGACCTAGTCTAAAAATATTATACT  492

seq1  AAAGTAGAAAACAAAACCAAGCCTACTGTCACTCTTAGGAATCAGTATCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAAAACAAAACCAAGCCTACTGTCACTCTTAGGAATCAGTATCT  542

seq1  TTGGAAATAATCTCTATATTTAAGGAGCAGGTATGGGATGATAGATTTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATAATCTCTATATTTAAGGAGCAGGTATGGGATGATAGATTTTG  592

seq1  CCTATGGGTGTGGCACCCATGTGCCTTGGGACATGAATGTGGCCACATTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGGTGTGGCACCCATGTGCCTTGGGACATGAATGTGGCCACATTC  642

seq1  CCAAAGGATATTGACTCTCCTCCCCTTAATAACCATCAAGAAACAAAGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGATATTGACTCTCCTCCCCTTAATAACCATCAAGAAACAAAGGT  692

seq1  GCCTCTGCTGAGGACTGGGCCTTGGAGGCTCCTTGGCCAGCCATGCTGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCTGAGGACTGGGCCTTGGAGGCTCCTTGGCCAGCCATGCTGGA  742

seq1  ATTTTGACTAGATGGATCTTGCGAAGGTCTTACTCAGGTTACCATGGCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACTAGATGGATCTTGCGAAGGTCTTACTCAGGTTACCATGGCAT  792

seq1  CTGAGAGTTGGTGTATATTACAGCCATGCCATGTTTAGAAGCTATCATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTTGGTGTATATTACAGCCATGCCATGTTTAGAAGCTATCATTT  842

seq1  CACAGCTCTCTCATCCATCCTCCAGATTTTCCATTCTTCTCTTCCCCTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCTCTCATCCATCCTCCAGATTTTCCATTCTTCTCTTCCCCTCT  892

seq1  TCTGTGCTGTTCCCTGAGCCTTGGAGTTGATATAGATGATTCATCCACAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGTTCCCTGAGCCTTGGAGTTGATATAGATGATTCATCCACAG  942

seq1  ATGAGCAGCCACAGCTACTTATACACGGGACTTTGACCAGTTGTGAACCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGCCACAGCTACTTATACACGGGACTTTGACCAGTTGTGAACCT  992

seq1  CTTTATTACCCTCTACCCACTGCCAACCCATCTCTGACCAAAACTGAAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTACCCTCTACCCACTGCCAACCCATCTCTGACCAAAACTGAAAC  1042

seq1  CAATCTCTTCCCTGGC  1061
      ||||||||||||||||
seq2  CAATCTCTTCCCTGGC  1058


seq1: chr19_17282540_17283350
seq2: B6Ng01-327M08.g_67_880

seq1  GAATTCAGGATGTGGGTATAGGTCAGAGTGGATGCTTAACATGTGTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATGTGGGTATAGGTCAGAGTGGATGCTTAACATGTGTTAGA  50

seq1  GCCTGGGTTTTGTCCCCACTGATAATAATATAGAAAAGAACAGCAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTTTTGTCCCCACTGATAATAATATAGAAAAGAACAGCAAGAAG  100

seq1  GCTTTCGGGGAAAGACAGCAGCTTTAGGAGGGAAGTGTAGTGACTGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCGGGGAAAGACAGCAGCTTTAGGAGGGAAGTGTAGTGACTGATGA  150

seq1  TGTAAGTCTCTTTTCCTTTTTCTTCTTCCAGCTCTAAATTCAGCAGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCTCTTTTCCTTTTTCTTCTTCCAGCTCTAAATTCAGCAGTAAA  200

seq1  ATTAAATATGTGACTAGCTTATCTGAGCTCAGTGGCCTGATCCCCATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATGTGACTAGCTTATCTGAGCTCAGTGGCCTGATCCCCATGGA  250

seq1  CTGCATCCACATTCCAGAGAGCATCATCAAGTGAGTATGAGGGCTTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCACATTCCAGAGAGCATCATCAAGTGAGTATGAGGGCTTTGAA  300

seq1  GCGCTGGTAGCTGGTGAGAAAGAAGTCGCACCAGAGGAGGGGGATGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGTAGCTGGTGAGAAAGAAGTCGCACCAGAGGAGGGGGATGGGAA  350

seq1  AACAAGCCCTTCTAGAATGATGGGGAATGTCATCTTATTTCTAAAGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCCTTCTAGAATGATGGGGAATGTCATCTTATTTCTAAAGGAGA  400

seq1  TAGGTATTATCTAATAAATAAAGCTTTGGCTCTAACCTAAAAATTGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTATCTAATAAATAAAGCTTTGGCTCTAACCTAAAAATTGCTAT  450

seq1  TCTTTCAGATCCTCTTTTGTATGGCTTGTAACGATTAATTATTGACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGATCCTCTTTTGTATGGCTTGTAACGATTAATTATTGACTTTT  500

seq1  ACTTTTTATTTCATACAATATATTTGATCATATCTTTTCAACCAAGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTATTTCATACAATATATTTGATCATATCTTTTCAACCAAGATTA  550

seq1  GCTATTGACATTTTTTACCTTGAAATTTGTTTCCACCCTGGAGACACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGACATTTTTTACCTTGAAATTTGTTTCCACCCTGGAGACACCAC  600

seq1  TAGTATGAACTACAACGTTTATACCTGTTACACTGTACTTTACATTAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGAACTACAACGTTTATACCTGTTACACTGTACTTTACATTAAGG  650

seq1  TTTTCCCATATTTTAGATTTTTTTCCTTAAGTAA-TTTGTCTACATGAGC  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTCCCATATTTTAGATTTTTTTCCTTAAGTAATTTTGTCTACATGAGC  700

seq1  CCAGAAGATAGATAAAAAGAAAAACTG-TTTTCTCCAAATCCCTCCCCAC  748
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAGAAGATAGATAAAAAGAAAAACTGTTTTTCTCCAAATCCCTCCCCAC  750

seq1  CAATGCCTTTAGAGGGAAGATTAGATGGAGACCCTTTGTTGAGGAGTGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCTTTAGAGGGAAGATTAGATGGAGACCCTTTGTTGAGGAGTGGG  800

seq1  TGGG-TTGTGAGTA  811
      |||| |||||||||
seq2  TGGGTTTGTGAGTA  814


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