BAC Information

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BAC

Clone NameB6Ng01-328D04
Chromosome19 (Build37)
Map Location 56,223,243 - 56,337,302
singlet/doubletdoublet
Overlap genenone
Upstream geneTectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr, LOC100043484
Downstream geneHabp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328D04.bB6Ng01-328D04.g
ACCGA115527GA115528
length1,2421,162
definitionB6Ng01-328D04.b B6Ng01-328D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,223,243 - 56,224,480)(56,336,130 - 56,337,302)
sequence
gaattctagcatcttccccctgacccagatcagggaatagcaggcagcca
cagagtgagggtgacagggaggggtggctgcctggggctgttcagcctgg
gtggactgtatctcttcttctgcaggtaagtgagacggaaggcctattca
gtatttcttaactgctcttgatgtttttattgtttgattgtttttgttgt
tgttttggttctttgttttgttttgggggacataacatagctgagcacaa
aattaaagttgtggttcctatgtgtgaaaaatgcaaaccgaagcaggacc
tgtggaccatcgatgagcactcactgtgtgcgaggcttctatctgctcag
cactctcatgagtcatttattctttgaccaaccctggaaggcttttgagt
attgccaaataaaacaatgaagcatagactcctgtggcattaagagtgac
tgatagagctaggcctggtggcgaatgcctttaatcctagcacttaggag
gcagaggcaggtgagtctctcagtttgaggccaacctggtctacagaata
agtcctgggacagccaaagctacaaagagaaactttgtcttgaacaaagt
ttgttttgtcttgaacaacccccaaatacagagggggctcaggcagacag
acagacagacaatggggtggccacagcaacaagaatccattcgctcacag
ttcagggactagatccaaaccagaggtctgagtggagcaggggtaagttc
tcatggtgtttgcagcataagttgattgattgtacacctctcttctgatt
tctggggttattggaaatccctagcatgtctacactggcagctgaatagc
tccagtctctgccctcgttgtcacgtctctcttctgccacttcctccccc
tccttctacttcccataaaggccgttgattgtattaagtcagcccaataa
tgacctcaccttaagtgggattatgtatgtaaggattttatttccaacag
gtggtcacctctgtagtggtgggacagggtacctcacatgtgcctttgga
ggcacagttcaactcttaaccacttagcaggcagtaagtctagattccag
gagtcctagtctctgagccttgacttcttagttggcattgctgaaccaga
attgccatcacttcaacatctgccatcttccctatgaactttctcgattc
caacgccccatggatagagaaaggtgaaaaggtttctcccct
gaattcctgtgtcgtttttctcctgtaggcatgaagtgagaataaaacgg
aaacgtcagttaacttagaaagggcatggaggagaagagccaacgaccta
gatccgcatgagactagagcccgactaagttagttcaaattactgggaca
aagtcacaggctagcttctacctcttcttcctcaagctgcacatgtaagg
acttcaaagaccagcatgcatctcggggcagcaaatgggacttggaaata
cactgaatatatgaggtgccagctgatcttgggaggcttaggatgtcctc
ggagacaggaagagtcaaaaaagatttggacagggtgggaatactaatgc
cagagggattctgggagtcaagggaggagggagggttagccagggagcac
tgagtaccagacagtgcttatcccagagagataaaatggaggctggaaca
ctgggctcctgatcttcacttataccgctctggacgttcaaaacccttac
ccatccttcatggtatttaattctcacaacacagtagggcagatattctt
tctcagtgaccaggaaagggggcctggggcttacagatggacataaagaa
cagcgaggtgaggcaggaccagattctaagccaagccctctgcctctaaa
ttcactctgattttcaaagaacaggaacgtgatgaaaaacacgtttgaat
ccattgtagtaacagctaccgtttgtcgcgggctccgatgcgccaggcgc
tatgctaagagccttgaagtcatcactgtcaccatgttcctgtgaggaag
gtcctctaatcctctactgtgctcaggggggaggaagctgaagcccagag
agattaagacacttgcccacggggcagagccgtgattggaaaccaagatg
aatctggcttcaaatctgtgtgtgtgacctttgtaatattttgcctgttc
ctcaagaggaggactccggggctttgtccccacgacctgatgctgttgaa
aagatatgagaaggaagcagcttctccaaaccttcagcttagctgagctg
cagcagcaccacagcttcccttgggatgggtagagaggcttgctgagcgc
ttggttacacgtcccaggcgacccactcagaacagacttcaggcaatgcc
acctcctttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_56223243_56224480
seq2: B6Ng01-328D04.b_46_1287

seq1  GAATTCTAGCATCTTCCCCCTGACCCAGATCAGGGAATAGCAGGCAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCATCTTCCCCCTGACCCAGATCAGGGAATAGCAGGCAGCCA  50

seq1  CAGAGTGAGGGTGACAGGGAGGGGTGGCTGCCTGGGGCTGTTCAGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGGGTGACAGGGAGGGGTGGCTGCCTGGGGCTGTTCAGCCTGG  100

seq1  GTGGACTGTATCTCTTCTTCTGCAGGTAAGTGAGACGGAAGGCCTATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTGTATCTCTTCTTCTGCAGGTAAGTGAGACGGAAGGCCTATTCA  150

seq1  GTATTTCTTAACTGCTCTTGATGTTTTTATTGTTTGATTGTTTTTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTTAACTGCTCTTGATGTTTTTATTGTTTGATTGTTTTTGTTGT  200

seq1  TGTTTTGGTTCTTTGTTTTGTTTTGGGGGACATAACATAGCTGAGCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGTTCTTTGTTTTGTTTTGGGGGACATAACATAGCTGAGCACAA  250

seq1  AATTAAAGTTGTGGTTCCTATGTGTGAAAAATGCAAACCGAAGCAGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGTTGTGGTTCCTATGTGTGAAAAATGCAAACCGAAGCAGGACC  300

seq1  TGTGGACCATCGATGAGCACTCACTGTGTGCGAGGCTTCTATCTGCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCATCGATGAGCACTCACTGTGTGCGAGGCTTCTATCTGCTCAG  350

seq1  CACTCTCATGAGTCATTTATTCTTTGACCAACCCTGGAAGGCTTTTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCATGAGTCATTTATTCTTTGACCAACCCTGGAAGGCTTTTGAGT  400

seq1  ATTGCCAAATAAAACAATGAAGCATAGACTCCTGTGGCATTAAGAGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAAATAAAACAATGAAGCATAGACTCCTGTGGCATTAAGAGTGAC  450

seq1  TGATAGAGCTAGGCCTGGTGGCGAATGCCTTTAATCCTAGCACTTAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAGCTAGGCCTGGTGGCGAATGCCTTTAATCCTAGCACTTAGGAG  500

seq1  GCAGAGGCAGGTGAGTCTCTCAGTTTGAGGCCAACCTGGTCTACAGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGTGAGTCTCTCAGTTTGAGGCCAACCTGGTCTACAGAATA  550

seq1  AGTCCTGGGACAGCCAAAGCTACAAAGAGAAACTTTGTCTTGAACAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGGACAGCCAAAGCTACAAAGAGAAACTTTGTCTTGAACAAAGT  600

seq1  TTGTTTTGTCTTGAACAACCCCCAAATACAGAGGGGGCTCAGGCAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTCTTGAACAACCCCCAAATACAGAGGGGGCTCAGGCAGACAG  650

seq1  ACAGACAGACAATGGGGTGGCCACAGCAACAAGAATCCATTCGCTCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAATGGGGTGGCCACAGCAACAAGAATCCATTCGCTCACAG  700

seq1  TTCAGGGACTAGATCCAAACCAGAGGTCTGAGTGGAGCAGGGGTAAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGACTAGATCCAAACCAGAGGTCTGAGTGGAGCAGGGGTAAGTTC  750

seq1  TCATGGTGTTTGCAGCATAAGTTGATTGATTGTACACCTCTCTTCTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGTTTGCAGCATAAGTTGATTGATTGTACACCTCTCTTCTGATT  800

seq1  TCTGGGGTTATTGGAAATCCCTAGCATGTCTACACTGGCAGCTGAATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTTATTGGAAATCCCTAGCATGTCTACACTGGCAGCTGAATAGC  850

seq1  TCCAGTCTCTGCCCTCGTTGTCACGTCTCTCTTCTGCCACTTCCTCCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTCTGCCCTCGTTGTCACGTCTCTCTTCTGCCACTTCCTCCCCC  900

seq1  TCCTTCTACTTCCCAT-AAGGCCGTTGATTGTATTAAGTCAGCCCAATAA  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCTTCTACTTCCCATAAAGGCCGTTGATTGTATTAAGTCAGCCCAATAA  950

seq1  TGACCTCACCTTAAGT-GGATTATGTATGTAAGGATTTTATTTCCAACA-  997
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  TGACCTCACCTTAAGTGGGATTATGTATGTAAGGATTTTATTTCCAACAG  1000

seq1  GTGGTCACCTCTGTAGTGGTGGGACAGGGTACCTCACATGTGCCTTTGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGGTCACCTCTGTAGTGGTGGGACAGGGTACCTCACATGTGCCTTTGG-  1049

seq1  AGGCACAG-TCAACTCTTAA-CACTTAGCAGGCAGTTAAGGTCTAGATTC  1095
      |||||||| ||||||||||| |||||||||||||||  | ||||||||||
seq2  AGGCACAGTTCAACTCTTAACCACTTAGCAGGCAGT--AAGTCTAGATTC  1097

seq1  AAGGAGT-CTAGTCTCTGAGCC-TGACTCCTTAGTTGCCA-TGCTGAACC  1142
       |||||| |||||||||||||| ||||| |||||||| || |||||||||
seq2  CAGGAGTCCTAGTCTCTGAGCCTTGACTTCTTAGTTGGCATTGCTGAACC  1147

seq1  AGATATGCATTCACTTCAACATCTG-CATCTTCCTCACTGACTCTTCTCT  1191
      |||  |||  ||||||||||||||| |||||||| |  |||   ||||| 
seq2  AGAATTGCCATCACTTCAACATCTGCCATCTTCC-CTATGAACTTTCTC-  1195

seq1  GATTTCCACAGCGCCACATGGTAGGAGAAAGGTGAAAAG---TGTCCCCT  1238
      ||||    || |||| |||||   |||||||||||||||   | ||||||
seq2  GATT---CCAACGCCCCATGGATAGAGAAAGGTGAAAAGGTTTCTCCCCT  1242

seq1: chr19_56336130_56337302
seq2: B6Ng01-328D04.g_66_1227 (reverse)

seq1  GAGAAAGGAGGTGGCCACTGGCGTGAAGTCCTGGTCTGAGTGGGTCGCCT  50
      |||||||||||||||   | || |||||| ||| ||||||||||||||||
seq2  GAGAAAGGAGGTGGC--ATTGCCTGAAGT-CTGTTCTGAGTGGGTCGCCT  47

seq1  GTGGACCGTGT-ACCCAGCGCTCAGCCAGCCTTCTTCCTTACCCATCCCA  99
      | ||| ||||| ||| |||||||||| ||||    ||  |||||||||||
seq2  G-GGA-CGTGTAACCAAGCGCTCAGCAAGCC----TCTCTACCCATCCCA  91

seq1  A-GGAAGCTGT-GTGCTGCTTGCAGCTCAGCTAAGCTGAAGGTTTGGAG-  146
      | ||||||||| ||||||| ||||||||||||||||||||||||||||| 
seq2  AGGGAAGCTGTGGTGCTGC-TGCAGCTCAGCTAAGCTGAAGGTTTGGAGA  140

seq1  AGCTGCCTTCCTTCTTCATATCTTTTCAAACAGCATCAGGTCGTGGGGAC  196
      ||||| |||||||| |||||||||||| ||||||||||||||||||||||
seq2  AGCTG-CTTCCTTC-TCATATCTTTTC-AACAGCATCAGGTCGTGGGGAC  187

seq1  AAAGGCCCCCGGAGTCCTCCTCTTTGAGGAACAGGCAAAATATTACAAAG  246
      ||||  |||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAG--CCCCGGAGTCCTCCTC-TTGAGGAACAGGCAAAATATTACAAAG  234

seq1  GTCACACACACAGATTTGAAGCCAGATTCATCTTGG-TTCCAATCACGGC  295
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTCACACACACAGATTTGAAGCCAGATTCATCTTGGTTTCCAATCACGGC  284

seq1  TCTGCCCCGTGGGCAAGTGTCTTAATCTCTCTGGGCTTCAGCTTCCTCCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCGTGGGCAAGTGTCTTAATCTCTCTGGGCTTCAGCTTCCTCCC  334

seq1  CCCTGAGCACAGTAGAGGATTAGAGGACCTTCCTCACAGGAACATGGTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCACAGTAGAGGATTAGAGGACCTTCCTCACAGGAACATGGTGA  384

seq1  CAGTGATGACTTCAAGGCTCTTAGCATAGCGCCTGGCGCATCGGAGCCCG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGACTTCAAGGCTCTTAGCATAGCGCCTGGCGCATCGGAGCCCG  434

seq1  CGACAAACGGTAGCTGTTACTACAATGGATTCAAACGTGTTTTTCATCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAACGGTAGCTGTTACTACAATGGATTCAAACGTGTTTTTCATCAC  484

seq1  GTTCCTGTTCTTTGAAAATCAGAGTGAATTTAGAGGCAGAGGGCTTGGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTTCTTTGAAAATCAGAGTGAATTTAGAGGCAGAGGGCTTGGCT  534

seq1  TAGAATCTGGTCCTGCCTCACCTCGCTGTTCTTTATGTCCATCTGTAAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTGGTCCTGCCTCACCTCGCTGTTCTTTATGTCCATCTGTAAGC  584

seq1  CCCAGGCCCCCTTTCCTGGTCACTGAGAAAGAATATCTGCCCTACTGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCCCCTTTCCTGGTCACTGAGAAAGAATATCTGCCCTACTGTGT  634

seq1  TGTGAGAATTAAATACCATGAAGGATGGGTAAGGGTTTTGAACGTCCAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAATTAAATACCATGAAGGATGGGTAAGGGTTTTGAACGTCCAGA  684

seq1  GCGGTATAAGTGAAGATCAGGAGCCCAGTGTTCCAGCCTCCATTTTATCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTATAAGTGAAGATCAGGAGCCCAGTGTTCCAGCCTCCATTTTATCT  734

seq1  CTCTGGGATAAGCACTGTCTGGTACTCAGTGCTCCCTGGCTAACCCTCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGATAAGCACTGTCTGGTACTCAGTGCTCCCTGGCTAACCCTCCC  784

seq1  TCCTCCCTTGACTCCCAGAATCCCTCTGGCATTAGTATTCCCACCCTGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTTGACTCCCAGAATCCCTCTGGCATTAGTATTCCCACCCTGTC  834

seq1  CAAATCTTTTTTGACTCTTCCTGTCTCCGAGGACATCCTAAGCCTCCCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTTTTTGACTCTTCCTGTCTCCGAGGACATCCTAAGCCTCCCAA  884

seq1  GATCAGCTGGCACCTCATATATTCAGTGTATTTCCAAGTCCCATTTGCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCTGGCACCTCATATATTCAGTGTATTTCCAAGTCCCATTTGCTG  934

seq1  CCCCGAGATGCATGCTGGTCTTTGAAGTCCTTACATGTGCAGCTTGAGGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAGATGCATGCTGGTCTTTGAAGTCCTTACATGTGCAGCTTGAGGA  984

seq1  AGAAGAGGTAGAAGCTAGCCTGTGACTTTGTCCCAGTAATTTGAACTAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGTAGAAGCTAGCCTGTGACTTTGTCCCAGTAATTTGAACTAAC  1034

seq1  TTAGTCGGGCTCTAGTCTCATGCGGATCTAGGTCGTTGGCTCTTCTCCTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCGGGCTCTAGTCTCATGCGGATCTAGGTCGTTGGCTCTTCTCCTC  1084

seq1  CATGCCCTTTCTAAGTTAACTGACGTTTCCGTTTTATTCTCACTTCATGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCTTTCTAAGTTAACTGACGTTTCCGTTTTATTCTCACTTCATGC  1134

seq1  CTACAGGAGAAAAACGACACAGGAATTC  1173
      ||||||||||||||||||||||||||||
seq2  CTACAGGAGAAAAACGACACAGGAATTC  1162