BAC Information

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BAC

Clone NameB6Ng01-328N03
Chromosome19 (Build37)
Map Location 5,265,516 - 5,387,766
singlet/doubletdoublet
Overlap genePacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1
Upstream geneSsh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424
Downstream geneTsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328N03.bB6Ng01-328N03.g
ACCGA115977GA115978
length6811,041
definitionB6Ng01-328N03.b B6Ng01-328N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,265,516 - 5,266,176)(5,386,729 - 5,387,766)
sequence
gaattccatgcatcttataatcacagaaagtatctgcagctaacaaaatc
atgcacctgccagagcacaagacaaatcacagaccacaaactgtggtcaa
cctgaagcagctccatatcctatacttgggattaaaatggaaacacattc
tttgtttgtttggttgggttttgttttgttttgttttgttttgtttttag
agacagggtttctctgtgtacccctggatgccctggaactcactccgtag
accaggctggcctcgaactcaaaaatccacccgcctctgcctcccaactg
ctgggattaaaggcgtgcgccaccactgcccagctggaaacacattctta
aatttccaaaattgtcactacataggtgtatatatctgcatgcaggtatg
tgcacatgagtggaagttcagatccccagagatggactacagatgcttaa
aacctgtctgatgggaatgctaagagcaaagcttggtaccttgcctagcc
ttttttttttttttttttttaacaaatctttttttctaactttttatctt
tagatttatctattttattttatgtgatgaatgctttgcctgtgtgtata
catgtgtacccaccacatgtgtgcatggtgcccatggaagtcaaaagagg
tcatcagattgggggtgggataggggagaca
gtctgattggcctggtgaatggaggtgtcatctgttggaactgagtttag
aagagaagcagatttgaggcaggggagaatgacacagttttgggagaact
ttatgtttggtgtatatgggaaaccttacagtttaagtgagatagagtga
ctttgggctggtgtgtattcaggaaaccaaagaagtgccttagaacatgt
ggaatgagaacgagagtcaggcatagaacctgctaaattccagtagttca
gttgtgggcagaggaacatgttgaggagcataaatagtagccagtggcag
gaacccacagtctgcccataggatctatgcaaagagagcattgctgaagt
gtgatccaccacaggacattaatcttttaaacaaaggattgtttttatgt
taatgcatttgagtattttaccctcatgtgcccgtgccagcagaggtcag
aagaaggcatcggatcccctggaactgaattagatggctgtgagttgcca
tatggattctgagaaccaaatttgggtcctctgtaagaacagcaagtgct
cttatcccctgagacatctctccagtctccagatcagaaattttcttgaa
agtaatctgctagttggaaaaagggagacttgggacttgacagttcccac
agaaagtggagtggtgccaaggcagagaaagggactgttgggttaaagaa
gagagtgactgcagtggttgaatacggcagagatttttgagaagatgccc
tcctggtagggcctgggttgggggagctaaatttgatgcatcttcctctg
tatggtgtttgttgaagttctcttctgtttgtgggatgggtagagcaggt
ccaggttgcatgcctgcttatttatgttcttgtttatgtacatgttacct
gttcagcagccatggatgagctggggttaccctgaaaggggggctggaaa
tgaaacggactgggtgcgatagaggatgaagccagactaaacgtttctgc
acggctcaatgttcaatagtcagccctgacttttatatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5265516_5266176
seq2: B6Ng01-328N03.b_68_728

seq1  TCACAGAAAGTATCTGCAGCTAACAAAATCATGCACCTGCCAGAGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAAGTATCTGCAGCTAACAAAATCATGCACCTGCCAGAGCACAA  50

seq1  GACAAATCACAGACCACAAACTGTGGTCAACCTGAAGCAGCTCCATATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATCACAGACCACAAACTGTGGTCAACCTGAAGCAGCTCCATATCC  100

seq1  TATACTTGGGATTAAAATGGAAACACATTCTTTGTTTGTTTGGTTGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTGGGATTAAAATGGAAACACATTCTTTGTTTGTTTGGTTGGGTT  150

seq1  TTGTTTTGTTTTGTTTTGTTTTGTTTTTAGAGACAGGGTTTCTCTGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTGTTTTGTTTTTAGAGACAGGGTTTCTCTGTGTA  200

seq1  CCCCTGGATGCCCTGGAACTCACTCCGTAGACCAGGCTGGCCTCGAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGATGCCCTGGAACTCACTCCGTAGACCAGGCTGGCCTCGAACTC  250

seq1  AAAAATCCACCCGCCTCTGCCTCCCAACTGCTGGGATTAAAGGCGTGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCACCCGCCTCTGCCTCCCAACTGCTGGGATTAAAGGCGTGCGC  300

seq1  CACCACTGCCCAGCTGGAAACACATTCTTAAATTTCCAAAATTGTCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGCCCAGCTGGAAACACATTCTTAAATTTCCAAAATTGTCACTA  350

seq1  CATAGGTGTATATATCTGCATGCAGGTATGTGCACATGAGTGGAAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTGTATATATCTGCATGCAGGTATGTGCACATGAGTGGAAGTTCA  400

seq1  GATCCCCAGAGATGGACTACAGATGCTTAAAACCTGTCTGATGGGAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCAGAGATGGACTACAGATGCTTAAAACCTGTCTGATGGGAATGC  450

seq1  TAAGAGCAAAGCTTGGTACCTTGCCTAGCCTTTTTTTTTTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAAAGCTTGGTACCTTGCCTAGCCTTTTTTTTTTTTTTTTTTTT  500

seq1  AACAAATCTTTTTTTCTAACTTTTTATCTTTAGATTTATCTATTTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCTTTTTTTCTAACTTTTTATCTTTAGATTTATCTATTTTATTT  550

seq1  TATGTGATGAATGCTTTGCCTGTGTGTATACATGTGTACCCACCACATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATGAATGCTTTGCCTGTGTGTATACATGTGTACCCACCACATGT  600

seq1  GTGCATGGTGCCCATGGAAGTCAAAAGAGGTCATCAGATTGGGGGTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGGTGCCCATGGAAGTCAAAAGAGGTCATCAGATTGGGGGTGGGA  650

seq1  TAGGGGAGACA  661
      |||||||||||
seq2  TAGGGGAGACA  661

seq1: chr19_5386729_5387766
seq2: B6Ng01-328N03.g_73_1113 (reverse)

seq1  CCTATATAAATG-CAGGGCTGACTATTGAACTTTGAGCCGTGCAGAAACG  49
      |||||||||| | |||||||||||||||||| ||||||||||||||||||
seq2  CCTATATAAAAGTCAGGGCTGACTATTGAACATTGAGCCGTGCAGAAACG  50

seq1  TTT-GTCTTGGCTTCATCCTTCTCTCGCACCCAGTCCTTTTCATTTCCAG  98
      ||| ||| ||||||||||| ||| ||||||||||||| ||||||||||||
seq2  TTTAGTC-TGGCTTCATCC-TCTATCGCACCCAGTCCGTTTCATTTCCAG  98

seq1  CCCCCCTTTCAGGGTAA-CCCAGCTCATCCATGGCTGCTGAACAGGT-AC  146
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  CCCCCCTTTCAGGGTAACCCCAGCTCATCCATGGCTGCTGAACAGGTAAC  148

seq1  ATGTACATAAACAAGAACATAAATAAGCAGGCATGCACCCTGGACCTGCT  196
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTACATAAACAAGAACATAAATAAGCAGGCATGCAACCTGGACCTGCT  198

seq1  CTACCCATCCCACAAACAGAAGAGAACTTCAACAAACACCATACAGAGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATCCCACAAACAGAAGAGAACTTCAACAAACACCATACAGAGGA  248

seq1  AGATGCATCAAATTTAGCTCCCCCAA-CCAGGCCCTACCAGGAGGGCATC  295
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGATGCATCAAATTTAGCTCCCCCAACCCAGGCCCTACCAGGAGGGCATC  298

seq1  TTCTCAAAAATCTCTGCCGTATTCAACCACTGCAGTCACTCTCTTCTTTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAAATCTCTGCCGTATTCAACCACTGCAGTCACTCTCTTCTTTA  348

seq1  ACCCAACAGTCCCTTTCTCTGCCTTGGCACCACTCCACTTTCTGTGGGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACAGTCCCTTTCTCTGCCTTGGCACCACTCCACTTTCTGTGGGAA  398

seq1  CTGTCAAGTCCCAAGTCTCCCTTTTTCCAACTAGCAGATTACTTTCAAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGTCCCAAGTCTCCCTTTTTCCAACTAGCAGATTACTTTCAAGA  448

seq1  AAATTTCTGATCTGGAGACTGGAGAGATGTCTCAGGGGATAAGAGCACTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGATCTGGAGACTGGAGAGATGTCTCAGGGGATAAGAGCACTT  498

seq1  GCTGTTCTTACAGAGGACCCAAATTTGGTTCTCAGAATCCATATGGCAAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTTACAGAGGACCCAAATTTGGTTCTCAGAATCCATATGGCAAC  548

seq1  TCACAGCCATCTAATTCAGTTCCAGGGGATCCGATGCCTTCTTCTGACCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCATCTAATTCAGTTCCAGGGGATCCGATGCCTTCTTCTGACCT  598

seq1  CTGCTGGCACGGGCACATGAGGGTAAAATACTCAAATGCATTAACATAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCACGGGCACATGAGGGTAAAATACTCAAATGCATTAACATAAA  648

seq1  AACAATCCTTTGTTTAAAAGATTAATGTCCTGTGGTGGATCACACTTCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCCTTTGTTTAAAAGATTAATGTCCTGTGGTGGATCACACTTCAG  698

seq1  CAATGCTCTCTTTGCATAGATCCTATGGGCAGACTGTGGGTTCCTGCCAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCTCTTTGCATAGATCCTATGGGCAGACTGTGGGTTCCTGCCAC  748

seq1  TGGCTACTATTTATGCTCCTCAACATGTTCCTCTGCCCACAACTGAACTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACTATTTATGCTCCTCAACATGTTCCTCTGCCCACAACTGAACTA  798

seq1  CTGGAATTTAGCAGGTTCTATGCCTGACTCTCGTTCTCATTCCACATGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTTAGCAGGTTCTATGCCTGACTCTCGTTCTCATTCCACATGTT  848

seq1  CTAAGGCACTTCTTTGGTTTCCTGAATACACACCAGCCCAAAGTCACTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCACTTCTTTGGTTTCCTGAATACACACCAGCCCAAAGTCACTCT  898

seq1  ATCTCACTTAAACTGTAAGGTTTCCCATATACACCAAACATAAAGTTCTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTTAAACTGTAAGGTTTCCCATATACACCAAACATAAAGTTCTC  948

seq1  CCAAAACTGTGTCATTCTCCCCTGCCTCAAATCTGCTTCTCTTCTAAACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTGTGTCATTCTCCCCTGCCTCAAATCTGCTTCTCTTCTAAACT  998

seq1  CAGTTCCAACAGATGACACCTCCATTCACCAGGCCAATCAGAC  1038
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCAACAGATGACACCTCCATTCACCAGGCCAATCAGAC  1041