BAC Information

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BAC

Clone NameB6Ng01-329B08
Chromosome19 (Build37)
Map Location 38,561,671 - 38,661,690
singlet/doubletdoublet
Overlap geneLOC100042483, Plce1
Upstream geneExoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20
Downstream geneEG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329B08.bB6Ng01-329B08.g
ACCGA116160GA116161
length1,1761,048
definitionB6Ng01-329B08.b B6Ng01-329B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,561,671 - 38,562,849)(38,660,633 - 38,661,690)
sequence
gaattcaacacatattagctagcattgggcttttgtagacccagcagtat
agcaggaaaagaatgtaacttctcttcattgcagtgaaggtagctgaggt
ctctgaggtctcaaggtcttctgcccagaagtacagtggctgccccttgc
agaggttacagacctttcttagaaccccaccagccagccagttggcgggc
ctggggtatgtagtatacaacgatgatttcagctcccccctcccccagct
tctgctccaaatttggaatataatataaactctgccctctagctttaagg
tgcaaaggtttacaaatgtcctccccaccccccaacccagatggtggtat
cccttcagtgaggtcgggagcacaagggtgagagccaagcacctggggaa
aaaaagcagtgtcgccaatcttcatagggctaatagataggactggccag
ttcatgtcagccaggttcattatcagtgtgcctgagacctgttgtatctc
tctgcttggtggcgagagtgctctggccacagcctccaccacccaccgct
cacagtaactgtgaaaggtctcttttaaagggggtctgtgggtacaccct
cacccagaagtcagctggcaattgtgtatttgtatttcttggtaggagca
actagctacattgtagtatttaaacagtgtgggttctttattcagaatca
aaagaggcagaagcaaggagagactctgttttgatgacttcattgtaagt
ttaaactatataatattactgagtatggaaaatccagggagtggaaagaa
aatcatctggggaaaacacatgtgacccagagcatgctatacacgtctgg
gattaaaatatcatgtaacgagctttaatttgaataacaccggagttgct
tcaaaagctatctttctaaagaaagtgcccattcattagctattctgcaa
aacagatcagacttcgttgttgatcatctttttcaccagggaaacccctt
gctggggaagaactgcaggttcccgccagcctcttttgtcaatctctggg
aggtggataatatcacggaagttaagactctgcatgagattttttgttct
ccacttttcaccacaagggcaggaatgatcgaaggtcagcgaagcctgag
ttctttgttcgctgtgcttcagcaag
gaattccaagccaggatgtatatataaagtaggatataaaatctgaagtt
tgttttaattgctccagcagaaatgacatgctcagtagaggggctgatga
aacaagaagctaacactggtaagtgctgaagctaagtaaagggcacaaga
actccattttttttttctgtatttttacgcttgaaagactacacaacaat
gactttctatttaaaaggaacaaagccgggcacgacagcacagccctgta
attccagcacctgggaggttgagggtacggaatcaaaaccacacttgact
acgtagtttgaagaggattgcagtcatcttgggctacatgagatcttggc
tcaaaacaaaacacatggtgatcgccaagcaagtcttctcttttgctctg
tactctcctcctgtactttcaaccaagtttaatgtgctggcagcatagcg
ttgccttcctcctaagtctccaggtgagagctgaatagctgttgggcagc
agctctcctaagtctctgccatgcctggccaatccatctgctccaaactg
acctatgtccttacattaacacaggaccactgtctgctgtctcaaactgg
ccactgctgtctcccaaccacttaaggctgagaaacaacactgtcaggtt
ttttttttttttaatttcccttccagcctctaaggatgtgataagctttc
ctggaagactagatccaaagtgactggaagagctaaaggaaaaagtatgt
tggagcgcctcttttccaacatacgcagtgcaagtgagccttcactggca
tgtcaaacccccttagcttcactctgcttgcataagaaccagtcatcaat
atctttgatcccctgtttcatcatcaaaggaagaaaggttaattggctag
atcttttcaatatgttttgtttctttaatggtttgtggtggtaggaaaaa
aaactatccatgtgcctgtgcacaataggtaggtctctaatatggagcct
gctccccacagcttataaagacgctcttatatagccacatagtactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38561671_38562849
seq2: B6Ng01-329B08.b_47_1222

seq1  GAATTCAACACATATTAGCTAGCATTGGGCTTTTGTAGACCCAGCAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACATATTAGCTAGCATTGGGCTTTTGTAGACCCAGCAGTAT  50

seq1  AGCAGGAAAAGAATGTAACTTCTCTTCATTGCAGTGAAGGTAGCTGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAAAGAATGTAACTTCTCTTCATTGCAGTGAAGGTAGCTGAGGT  100

seq1  CTCTGAGGTCTCAAGGTCTTCTGCCCAGAAGTACAGTGGCTGCCCCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGTCTCAAGGTCTTCTGCCCAGAAGTACAGTGGCTGCCCCTTGC  150

seq1  AGAGGTTACAGACCTTTCTTAGAACCCCACCAGCCAGCCAGTTGGCGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTACAGACCTTTCTTAGAACCCCACCAGCCAGCCAGTTGGCGGGC  200

seq1  CTGGGGTATGTAGTATACAACGATGATTTCAGCTCCCCCCTCCCCCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTATGTAGTATACAACGATGATTTCAGCTCCCCCCTCCCCCAGCT  250

seq1  TCTGCTCCAAATTTGGAATATAATATAAACTCTGCCCTCTAGCTTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCAAATTTGGAATATAATATAAACTCTGCCCTCTAGCTTTAAGG  300

seq1  TGCAAAGGTTTACAAATGTCCTCCCCACCCCCCAACCCAGATGGTGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGTTTACAAATGTCCTCCCCACCCCCCAACCCAGATGGTGGTAT  350

seq1  CCCTTCAGTGAGGTCGGGAGCACAAGGGTGAGAGCCAAGCACCTGGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAGTGAGGTCGGGAGCACAAGGGTGAGAGCCAAGCACCTGGGGAA  400

seq1  AAAAAGCAGTGTCGCCAATCTTCATAGGGCTAATAGATAGGACTGGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAGTGTCGCCAATCTTCATAGGGCTAATAGATAGGACTGGCCAG  450

seq1  TTCATGTCAGCCAGGTTCATTATCAGTGTGCCTGAGACCTGTTGTATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCAGCCAGGTTCATTATCAGTGTGCCTGAGACCTGTTGTATCTC  500

seq1  TCTGCTTGGTGGCGAGAGTGCTCTGGCCACAGCCTCCACCACCCACCGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGGTGGCGAGAGTGCTCTGGCCACAGCCTCCACCACCCACCGCT  550

seq1  CACAGTAACTGTGAAAGGTCTCTTTTAAAGGGGGTCTGTGGGTACACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAACTGTGAAAGGTCTCTTTTAAAGGGGGTCTGTGGGTACACCCT  600

seq1  CACCCAGAAGTCAGCTGGCAATTGTGTATTTGTATTTCTTGGTAGGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGAAGTCAGCTGGCAATTGTGTATTTGTATTTCTTGGTAGGAGCA  650

seq1  ACTAGCTACATTGTAGTATTTAAACAGTGTGGGTTCTTTATTCAGAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTACATTGTAGTATTTAAACAGTGTGGGTTCTTTATTCAGAATCA  700

seq1  AAAGAGGCAGAAGCAAGGAGAGACTCTGTTTTGATGACTTCATTGTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCAGAAGCAAGGAGAGACTCTGTTTTGATGACTTCATTGTAAGT  750

seq1  TTAAACTATATAATATTACTGAGTATGGAAAATCCAGGGAGTGGAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTATATAATATTACTGAGTATGGAAAATCCAGGGAGTGGAAAGAA  800

seq1  AATCATCTGGGGAAAACACATGTGACCCAGAGCATGCTATACACGTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTGGGGAAAACACATGTGACCCAGAGCATGCTATACACGTCTGG  850

seq1  GATTAAAATATCATGTAACGAGCTTTAATTTGAATAACACCGGAGTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAATATCATGTAACGAGCTTTAATTTGAATAACACCGGAGTTGCT  900

seq1  TCAAAAGCTATCTTTCTAAAGAAAGTGCCCATTCATTAGCTATTCTGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCTATCTTTCTAAAGAAAGTGCCCATTCATTAGCTATTCTGCAA  950

seq1  AACAAGATCAGACTTCGTTGTTGATCATC-TTTTCACCAGGGAAA-CCCT  998
      ||| ||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  AAC-AGATCAGACTTCGTTGTTGATCATCTTTTTCACCAGGGAAACCCCT  999

seq1  TGCT-GGGAAGAACTGCAGGGTTCCCGCCAGCCTCTTTTGTCAATCTCTG  1047
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCTGGGGAAGAACTGCA-GGTTCCCGCCAGCCTCTTTTGTCAATCTCTG  1048

seq1  GGAGGTGGATAATATTCACGGAAGTTAAAGACTCTTGGCATGAGATTTTT  1097
      |||||||||||||| ||||||||||| ||||||||  |||||||||||||
seq2  GGAGGTGGATAATA-TCACGGAAGTT-AAGACTCT--GCATGAGATTTTT  1094

seq1  --GTCTCCACTTTTTCACCCACAAAGGCA-GAATGAATTCAGAGGTCAGG  1144
         ||||||| |||||| |||||| |||| ||||||  ||  ||||||  
seq2  TGTTCTCCAC-TTTTCA-CCACAAGGGCAGGAATGA--TCGAAGGTCA--  1138

seq1  GCAGAGCCTGAGTTCTTTGTTCGCTG---CTCAGCAAG  1179
      ||  ||||||||||||||||||||||    ||||||||
seq2  GCGAAGCCTGAGTTCTTTGTTCGCTGTGCTTCAGCAAG  1176

seq1: chr19_38660633_38661690
seq2: B6Ng01-329B08.g_65_1112 (reverse)

seq1  CTAGTACTATGGTTGCTATATAAAAGAGCGTCTTTTATAAGGCTGTGGGG  50
      |||||||||| || |||||||  ||||||||| ||||||| |||||||||
seq2  CTAGTACTAT-GTGGCTATAT--AAGAGCGTC-TTTATAA-GCTGTGGGG  45

seq1  AGCAGGGCTCAATTATAGAGAACCTACCTA-TGTGCACAAGGCACATTGA  99
      |||| ||||| ||  ||||| ||||||||| ||||||| |||||||| ||
seq2  AGCA-GGCTCCATATTAGAG-ACCTACCTATTGTGCAC-AGGCACATGGA  92

seq1  TAGTTTTTTTTTCCCTAACCACCACAAACCATTAAAGAAACAAAACATAA  149
      |||||||||||  ||| ||||||||||||||||||||||||||||||| |
seq2  TAGTTTTTTTT--CCT-ACCACCACAAACCATTAAAGAAACAAAACAT-A  138

seq1  TTGAAAAGATCTAGCCAATTAACC-TTCTTCCTTTGATGATGAAACAGGG  198
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGAAAAGATCTAGCCAATTAACCTTTCTTCCTTTGATGATGAAACAGGG  188

seq1  GATCAAAGATATTGATGACTGGTTCTTATGCAAGCAGAGTGAAGCTAAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGATATTGATGACTGGTTCTTATGCAAGCAGAGTGAAGCTAAGG  238

seq1  GGGTTTGACATGCCAGTGAAGGCTCACTTGCACTGCGTATGTTGGAAAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGACATGCCAGTGAAGGCTCACTTGCACTGCGTATGTTGGAAAAG  288

seq1  AGGCGCTCCAACATACTTTTTCCTTTAGCTCTTCCAGTCACTTTGGATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCTCCAACATACTTTTTCCTTTAGCTCTTCCAGTCACTTTGGATCT  338

seq1  AGTCTTCCAGGAAAGCTTATCACATCCTTAGAGGCTGGAAGGGAAATTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCAGGAAAGCTTATCACATCCTTAGAGGCTGGAAGGGAAATTAA  388

seq1  AAAAAAAAAAAACCTGACAGTGTTGTTTCTCAGCCTTAAGTGGTTGGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACCTGACAGTGTTGTTTCTCAGCCTTAAGTGGTTGGGAG  438

seq1  ACAGCAGTGGCCAGTTTGAGACAGCAGACAGTGGTCCTGTGTTAATGTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTGGCCAGTTTGAGACAGCAGACAGTGGTCCTGTGTTAATGTAA  488

seq1  GGACATAGGTCAGTTTGGAGCAGATGGATTGGCCAGGCATGGCAGAGACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAGGTCAGTTTGGAGCAGATGGATTGGCCAGGCATGGCAGAGACT  538

seq1  TAGGAGAGCTGCTGCCCAACAGCTATTCAGCTCTCACCTGGAGACTTAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGCTGCTGCCCAACAGCTATTCAGCTCTCACCTGGAGACTTAGG  588

seq1  AGGAAGGCAACGCTATGCTGCCAGCACATTAAACTTGGTTGAAAGTACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCAACGCTATGCTGCCAGCACATTAAACTTGGTTGAAAGTACAG  638

seq1  GAGGAGAGTACAGAGCAAAAGAGAAGACTTGCTTGGCGATCACCATGTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGTACAGAGCAAAAGAGAAGACTTGCTTGGCGATCACCATGTGT  688

seq1  TTTGTTTTGAGCCAAGATCTCATGTAGCCCAAGATGACTGCAATCCTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGAGCCAAGATCTCATGTAGCCCAAGATGACTGCAATCCTCTT  738

seq1  CAAACTACGTAGTCAAGTGTGGTTTTGATTCCGTACCCTCAACCTCCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTACGTAGTCAAGTGTGGTTTTGATTCCGTACCCTCAACCTCCCAG  788

seq1  GTGCTGGAATTACAGGGCTGTGCTGTCGTGCCCGGCTTTGTTCCTTTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGAATTACAGGGCTGTGCTGTCGTGCCCGGCTTTGTTCCTTTTAA  838

seq1  ATAGAAAGTCATTGTTGTGTAGTCTTTCAAGCGTAAAAATACAGAAAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGTCATTGTTGTGTAGTCTTTCAAGCGTAAAAATACAGAAAAAA  888

seq1  AAAATGGAGTTCTTGTGCCCTTTACTTAGCTTCAGCACTTACCAGTGTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAGTTCTTGTGCCCTTTACTTAGCTTCAGCACTTACCAGTGTTA  938

seq1  GCTTCTTGTTTCATCAGCCCCTCTACTGAGCATGTCATTTCTGCTGGAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGTTTCATCAGCCCCTCTACTGAGCATGTCATTTCTGCTGGAGC  988

seq1  AATTAAAACAAACTTCAGATTTTATATCCTACTTTATATATACATCCTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACAAACTTCAGATTTTATATCCTACTTTATATATACATCCTGG  1038

seq1  CTTGGAATTC  1058
      ||||||||||
seq2  CTTGGAATTC  1048