BAC Information

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BAC

Clone NameB6Ng01-329I23
Chromosome19 (Build37)
Map Location 36,239,587 - 36,339,716
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1
Downstream geneLOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329I23.bB6Ng01-329I23.g
ACCGA116491GA116492
length1,1101,097
definitionB6Ng01-329I23.b B6Ng01-329I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,239,587 - 36,240,693)(36,338,628 - 36,339,716)
sequence
gaattccaaggctttgttccaaagctttctatctgcacggctcccaaaga
tctgttgcccttacctgtgtgctcccagaggacgctggtttctataacaa
cggaccctacccctgcctacccattatggtgtttaagaccatctgtcaat
ctaggatgaccgagtccagcccagttcagcacctccagacccgagacact
tgttccgatccaggcaacagtgttgttgatcagcagttactttccaaggg
tggagaaagggaaatggagactaggggtaaacaataaataaaagcagagc
ttccataagcccttctaatctgatggtttgtgtttccttcaccatgctct
ctctaggaacactcaagctgcagcaaggagaacaggaagtcagctgccca
tgcattgcctttctatgatgtcacttcaatcgtctttggcaagagaattt
gaatttaagagtttagttttaatcaaagacagctggagatttagttcagt
cagtcgcgtgcttgctagcatgtgtcatgccctgggttccatctctaaca
tggcataaaccagacgtagtgatttccagtgccacataagccagacataa
ttgcatatgcctgtaattataacagtcaggaggtgaatgcaagaggatca
aggttagtttcagctataaagagttcaaagctagctttgggtatagatga
ccctgtctttaaaaacaaaaaagaaccagtaagaataagtaaaatcggag
acaaatatgacgcacttccggagaaaacatttttgtctttcatgggtaga
tttttctgaaagaccaaatgagaagaaaattgatacagagctcagctgag
ggcttggttcagtaagaaaccttcactcagaaaggactaatattgcagag
tagaattaggaaaatggaaagacatgattttttttttttttttttggatt
ggaactgtattcacatttgtagccatccttgtaactgggaagagcacatg
gctaaaactgtggtctaggggcacttaatagggctgtgttatcctgatgc
aaagcagcacgagaatactgtaagttacaggactgcctcctctatacctg
tggtgcccat
gaattcccatatgcccaactcaaagccagcacactggcaggagatggggg
ttcccatctgtactttagtcttgaaaggggtcttcatgccctgggggtat
cattgtggccctggcataaagtgcctgggtttcagaaggctggtggtatg
agctttgcagtagactgttctggcaattatattagtaagcaattacactg
tgttcactggtagagatgttgttccagaagttgagtcagaggacattttt
ttttaagagagagagaaaatatactatactcaatatttccttttaaaact
tgattctctaatctttttctgcctcagggttacactgctgagagaaaatg
actgaatgtctgcctctagggctttccaatgttgctcacgtggctggggc
aattttaggctccaagaagtagcagagaccaatccctgaactgggtacca
agccaagagatctccaaggtcatttccaagaagaaaaatcaatatgtctg
gagaagtgggatccagctcagaaagttgggtcacgactgggccatcatag
gcatttctctggctggtacaggctgtcattgacccttgtagatgttaaag
gtcagtgcatatcagtgcaggttatatttacaccatgggctaaaattagc
tggcatgctctcctggcaacaaggaggatataaggttcccgatttatcca
gcaatgctaattttggcaaaacccaaaatggttcttgtgttctcaatgga
taggcattcaactagaataacatcctttcccttcctttccctcttctagt
cattataggaaatgtcaaatataaacctagctgactttggttcagcacaa
attcttacaagtatggaagtcttaatgggggtcttgtaaactcccaaggg
gttagcaacgctctcagtctagaacaaacacaagaatgacatgtttacca
cagttttcagcaaaatatccgagacagtgagccacttcatgggaaacatt
tgccattgtgttcctggcttattcaaggggagggtagaggagccttgcta
ctcatggtgaaggcaagctaggctctaaacttccctaagtggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_36239587_36240693
seq2: B6Ng01-329I23.b_47_1156

seq1  GAATTCCAAGGCTTTGTTCCAAAGCTTTCTATCTGCACGGCTCCCAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGCTTTGTTCCAAAGCTTTCTATCTGCACGGCTCCCAAAGA  50

seq1  TCTGTTGCCCTTACCTGTGTGCTCCCAGAGGACGCTGGTTTCTATAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCCCTTACCTGTGTGCTCCCAGAGGACGCTGGTTTCTATAACAA  100

seq1  CGGACCCTACCCCTGCCTACCCATTATGGTGTTTAAGACCATCTGTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACCCTACCCCTGCCTACCCATTATGGTGTTTAAGACCATCTGTCAAT  150

seq1  CTAGGATGACCGAGTCCAGCCCAGTTCAGCACCTCCAGACCCGAGACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATGACCGAGTCCAGCCCAGTTCAGCACCTCCAGACCCGAGACACT  200

seq1  TGTTCCGATCCAGGCAACAGTGTTGTTGATCAGCAGTTACTTTCCAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCGATCCAGGCAACAGTGTTGTTGATCAGCAGTTACTTTCCAAGGG  250

seq1  TGGAGAAAGGGAAATGGAGACTAGGGGTAAACAATAAATAAAAGCAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGGGAAATGGAGACTAGGGGTAAACAATAAATAAAAGCAGAGC  300

seq1  TTCCATAAGCCCTTCTAATCTGATGGTTTGTGTTTCCTTCACCATGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAAGCCCTTCTAATCTGATGGTTTGTGTTTCCTTCACCATGCTCT  350

seq1  CTCTAGGAACACTCAAGCTGCAGCAAGGAGAACAGGAAGTCAGCTGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGAACACTCAAGCTGCAGCAAGGAGAACAGGAAGTCAGCTGCCCA  400

seq1  TGCATTGCCTTTCTATGATGTCACTTCAATCGTCTTTGGCAAGAGAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGCCTTTCTATGATGTCACTTCAATCGTCTTTGGCAAGAGAATTT  450

seq1  GAATTTAAGAGTTTAGTTTTAATCAAAGACAGCTGGAGATTTAGTTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAGAGTTTAGTTTTAATCAAAGACAGCTGGAGATTTAGTTCAGT  500

seq1  CAGTCGCGTGCTTGCTAGCATGTGTCATGCCCTGGGTTCCATCTCTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGCGTGCTTGCTAGCATGTGTCATGCCCTGGGTTCCATCTCTAACA  550

seq1  TGGCATAAACCAGACGTAGTGATTTCCAGTGCCACATAAGCCAGACATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAAACCAGACGTAGTGATTTCCAGTGCCACATAAGCCAGACATAA  600

seq1  TTGCATATGCCTGTAATTATAACAGTCAGGAGGTGAATGCAAGAGGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATGCCTGTAATTATAACAGTCAGGAGGTGAATGCAAGAGGATCA  650

seq1  AGGTTAGTTTCAGCTATAAAGAGTTCAAAGCTAGCTTTGGGTATAGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGTTTCAGCTATAAAGAGTTCAAAGCTAGCTTTGGGTATAGATGA  700

seq1  CCCTGTCTTTAAAAACAAAAAAGAACCAGTAAGAATAAGTAAAATCGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTTTAAAAACAAAAAAGAACCAGTAAGAATAAGTAAAATCGGAG  750

seq1  ACAAATATGACGCACTTCCGGAGAAAACATTTTTGTCTTTCATGGGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGACGCACTTCCGGAGAAAACATTTTTGTCTTTCATGGGTAGA  800

seq1  TTTTTCTGAAAGACCAAATGAGAAGAAAATTGATACAGAGCTCAGCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAAAGACCAAATGAGAAGAAAATTGATACAGAGCTCAGCTGAG  850

seq1  GGCTTGGTTCAGTAAGAAACCTTCACCCAG-AAGGACTAATATTGCAGAG  899
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  GGCTTGGTTCAGTAAGAAACCTTCACTCAGAAAGGACTAATATTGCAGAG  900

seq1  TAGAATTAGGAAAATGGAAAGACATGA--TTTTTTTTTTTTTTTTGGATT  947
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  TAGAATTAGGAAAATGGAAAGACATGATTTTTTTTTTTTTTTTTTGGATT  950

seq1  GGAACTGTATTCACATTTGTAGCCATCCTTGTAACT-GGAAGAGCCACAT  996
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  GGAACTGTATTCACATTTGTAGCCATCCTTGTAACTGGGAAGAG-CACAT  999

seq1  GGCTAAAAACTGTGGTCTAGGGGCACTTAATAGGGCTGTG-TATCCTGAT  1045
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCT-AAAACTGTGGTCTAGGGGCACTTAATAGGGCTGTGTTATCCTGAT  1048

seq1  GCAGAAGCAGGCACGAG-ATACTGTAGGTTACAAGAACTGC--TCTCTAT  1092
      ||| ||||| ||||||| |||||||| ||||| || |||||   ||||||
seq2  GCA-AAGCA-GCACGAGAATACTGTAAGTTAC-AGGACTGCCTCCTCTAT  1095

seq1  ACCTGTGGTGCCCAT  1107
      |||||||||||||||
seq2  ACCTGTGGTGCCCAT  1110

seq1: chr19_36338628_36339716
seq2: B6Ng01-329I23.g_69_1165 (reverse)

seq1  TCCCT-CACTAAGGGAGGTTTAGAG-CTAGC-TGCCTTCACCATGAGTAG  47
      ||||| |||| ||||| |||||||| ||||| ||||||||||||||||||
seq2  TCCCTCCACTTAGGGAAGTTTAGAGCCTAGCTTGCCTTCACCATGAGTAG  50

seq1  CAGGCCTCCTCTACCCTCCCC-TGAATAGCCCAGGAACACAAT-GCAAAT  95
      || | |||||||||||||||| ||||||  ||||||||||||| ||||||
seq2  CAAGGCTCCTCTACCCTCCCCTTGAATAAGCCAGGAACACAATGGCAAAT  100

seq1  G-TTCCAATGAAGTGGCTCACTGTTCTCGGATA-TTTGCTGAAAACTGT-  142
      | |||| |||||||||||||||| ||||||||| ||||||||||||||| 
seq2  GTTTCCCATGAAGTGGCTCACTG-TCTCGGATATTTTGCTGAAAACTGTG  149

seq1  GTTAACATGTCATTCTTGTGGTTTGTTCTAGACTGAG-GCGTTGCTAACC  191
      || |||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  GTAAACATGTCATTCTTGT-GTTTGTTCTAGACTGAGAGCGTTGCTAACC  198

seq1  CCTT-GGAGTTTACAAGACCCCCATTAAGACTTCCATACTTGTAAGAATT  240
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAGTTTACAAGACCCCCATTAAGACTTCCATACTTGTAAGAATT  248

seq1  TGTGCTGAACCAAAGTCAGCTAGGTTTATATTTGACATTTCCTATAATGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAACCAAAGTCAGCTAGGTTTATATTTGACATTTCCTATAATGA  298

seq1  CTAGAAGAGGGAAAGGAAGGGAAAGGATGTTATTCTAGTTGAATGCCTAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGAGGGAAAGGAAGGGAAAGGATGTTATTCTAGTTGAATGCCTAT  348

seq1  CCATTGAGAACACAAGAACCATTTTGGGTTTTGCCAAAATTAGCATTGCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGAGAACACAAGAACCATTTTGGGTTTTGCCAAAATTAGCATTGCT  398

seq1  GGATAAATCGGGAACCTTATATCCTCCTTGTTGCCAGGAGAGCATGCCAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATCGGGAACCTTATATCCTCCTTGTTGCCAGGAGAGCATGCCAG  448

seq1  CTAATTTTAGCCCATGGTGTAAATATAACCTGCACTGATATGCACTGACC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTAGCCCATGGTGTAAATATAACCTGCACTGATATGCACTGACC  498

seq1  TTTAACATCTACAAGGGTCAATGACAGCCTGTACCAGCCAGAGAAATGCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATCTACAAGGGTCAATGACAGCCTGTACCAGCCAGAGAAATGCC  548

seq1  TATGATGGCCCAGTCGTGACCCAACTTTCTGAGCTGGATCCCACTTCTCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGCCCAGTCGTGACCCAACTTTCTGAGCTGGATCCCACTTCTCC  598

seq1  AGACATATTGATTTTTCTTCTTGGAAATGACCTTGGAGATCTCTTGGCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATTGATTTTTCTTCTTGGAAATGACCTTGGAGATCTCTTGGCTT  648

seq1  GGTACCCAGTTCAGGGATTGGTCTCTGCTACTTCTTGGAGCCTAAAATTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCAGTTCAGGGATTGGTCTCTGCTACTTCTTGGAGCCTAAAATTG  698

seq1  CCCCAGCCACGTGAGCAACATTGGAAAGCCCTAGAGGCAGACATTCAGTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCACGTGAGCAACATTGGAAAGCCCTAGAGGCAGACATTCAGTC  748

seq1  ATTTTCTCTCAGCAGTGTAACCCTGAGGCAGAAAAAGATTAGAGAATCAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTCAGCAGTGTAACCCTGAGGCAGAAAAAGATTAGAGAATCAA  798

seq1  GTTTTAAAAGGAAATATTGAGTATAGTATATTTTCTCTCTCTCTTAAAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAAGGAAATATTGAGTATAGTATATTTTCTCTCTCTCTTAAAAA  848

seq1  AAAATGTCCTCTGACTCAACTTCTGGAACAACATCTCTACCAGTGAACAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCCTCTGACTCAACTTCTGGAACAACATCTCTACCAGTGAACAC  898

seq1  AGTGTAATTGCTTACTAATATAATTGCCAGAACAGTCTACTGCAAAGCTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATTGCTTACTAATATAATTGCCAGAACAGTCTACTGCAAAGCTC  948

seq1  ATACCACCAGCCTTCTGAAACCCAGGCACTTTATGCCAGGGCCACAATGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACCAGCCTTCTGAAACCCAGGCACTTTATGCCAGGGCCACAATGA  998

seq1  TACCCCCAGGGCATGAAGACCCCTTTCAAGACTAAAGTACAGATGGGAAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCAGGGCATGAAGACCCCTTTCAAGACTAAAGTACAGATGGGAAC  1048

seq1  CCCCATCTCCTGCCAGTGTGCTGGCTTTGAGTTGGGCATATGGGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTCCTGCCAGTGTGCTGGCTTTGAGTTGGGCATATGGGAATTC  1097