BAC Information

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BAC

Clone NameB6Ng01-330O02
Chromosome19 (Build37)
Map Location 18,631,999 - 18,752,140
singlet/doubletdoublet
Overlap geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik
Upstream genePcsk5, Eef1a1-ps1
Downstream geneLOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330O02.bB6Ng01-330O02.g
ACCGA117404GA117405
length1,1511,119
definitionB6Ng01-330O02.b B6Ng01-330O02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,631,999 - 18,633,130)(18,751,034 - 18,752,140)
sequence
gaattccaccgcacagacctgtgccttaatggattcttcctgtctcattc
tctcctttcacattttgtttatctcattctcttccatttatcaacttggt
ttttatctatttctatttctttctccactctttgatcttctctctttccc
ttgaataagattgtctctaggattccttgtctcttctcacacactctccc
ataggcaagtagctttgcatttctatttcagcagaaaattcatagtaaac
aaggacctctttctcaagctcaatataatagtcatattttacatatgatg
tgaccaggtatgatgttaaagttaatactacagacaacaaatgatgtgag
cacaatttttaagaatccttttttaagtcattgaagctagtgtcctctag
tggccagtagcagaatttgtgacagatgttaaagctgtctgtagtagaca
cctagacacaaagtaaattcctagctcttcagtagttcgcaattccctat
attatttgagagattctacaatagtggatcaaaacattatttgatcagaa
tcatagctattttattagaatctataaaaagtactgtaagttcatgagca
taactagatagacttcctagatgtcagaaattctttacccaaaagaacag
tttcgccaacttgataatgtatgaaaataacaaatcataaaactatcact
aaaatcagacacgataagcatgatgaatttttgcatgcttatgtgaacat
tttaactgcttaaatttattttactagtaatattgatcattaattaattt
gttatctcagttagttcacactcatttgcctccgttcccttctgagatca
taggaaaataataaaataaatacatgactgtgtatctatagaggagctaa
aataatgcaacccatggagcgtatgcacagaaagaaagttgaagccgaaa
aagtgttctgaggcagtggatcacagattctttgtagaacattgagacct
agtggctgctgtagaattttcttagaacttgactgccaaattaaaactta
tttggagttcatattaccctagacagaattagcaaaagggcaacaaaaca
attgacaggccaatgctgttggagattggtgggaaggaaacacttatgtg
t

gaattctctcatcagaggccaagctcattttaagactgtcagcttgcata
actgttattccgaagtcctgctggacaccacccttaggccccaccctttg
acgtttgaaggaacgtctgctatgcttttacttcatgaggaatacttctc
agaggaaccgacaacaacaaaatggcttataatgaataggaagacatgtg
caataataagaggacacatcaaagtttaatttataattatttttctaatt
tcaattttcaaattaaacattttgtgcaaaactggatgatagcgtagcta
catcatcaagcagtaacatgctgcggtaaaagttaaaatggcctagattt
aatccccagaatcaaaacagtaaaaatgtagaatatagagtatgtttgga
agctaactaaaggctagcctagttgaattttgaaaactataaattatata
ctacaaaagtaatattaaacaaatgaaaaattaaaattctttagggtttc
aaatgtaatcgtcacaatttgcattccaaaggttttctaatggttacgtt
gaggattgcttatttatgaagtaaagaggaaagcctcatttttaaaaggt
aaatgtcattttatatcaaccaaattgacaaaaacctataaatccaacta
ggtcaaacatttgagaattatagaaaaattagaacatttacataccaatg
gtgaatccagaaatgactataaccactttgcaaaataacagcatccttag
taaagcttaatgttgatcaaccctatgatctaggaattatactcttaaac
atactcaagaaacacaagctgccttcaccacagcactgtcaaataaacac
aaaaccccacgaacaacagaaagcctattatcagtggtcatgatgaagaa
atcatactggggaatgcagagaaataaacaaagcacggctacaactctaa
aagaataaaatcagagcacaaatatttgtttaaaatagccactattaaag
taccacatgataccataacttcaatttttatataaacatcaaacaccaca
ttgttcaggaagccaaggcccattgttgcatggtaaggacaccccctctt
ctgggtgaaaaggatgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18631999_18633130
seq2: B6Ng01-330O02.b_51_1201

seq1  GAATTCCACCGCACAGACCTGTGCCTTAATGGATTCTTCCTGTCTCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCGCACAGACCTGTGCCTTAATGGATTCTTCCTGTCTCATTC  50

seq1  TCTCCTTTCACATTTTGTTTATCTCATTCTCTTCCATTTATCAACTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTCACATTTTGTTTATCTCATTCTCTTCCATTTATCAACTTGGT  100

seq1  TTTTATCTATTTCTATTTCTTTCTCCACTCTTTGATCTTCTCTCTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTATTTCTATTTCTTTCTCCACTCTTTGATCTTCTCTCTTTCCC  150

seq1  TTGAATAAGATTGTCTCTAGGATTCCTTGTCTCTTCTCACACACTCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAGATTGTCTCTAGGATTCCTTGTCTCTTCTCACACACTCTCCC  200

seq1  ATAGGCAAGTAGCTTTGCATTTCTATTTCAGCAGAAAATTCATAGTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAAGTAGCTTTGCATTTCTATTTCAGCAGAAAATTCATAGTAAAC  250

seq1  AAGGACCTCTTTCTCAAGCTCAATATAATAGTCATATTTTACATATGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTCTTTCTCAAGCTCAATATAATAGTCATATTTTACATATGATG  300

seq1  TGACCAGGTATGATGTTAAAGTTAATACTACAGACAACAAATGATGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGGTATGATGTTAAAGTTAATACTACAGACAACAAATGATGTGAG  350

seq1  CACAATTTTTAAGAATCCTTTTTTAAGTCATTGAAGCTAGTGTCCTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTTTAAGAATCCTTTTTTAAGTCATTGAAGCTAGTGTCCTCTAG  400

seq1  TGGCCAGTAGCAGAATTTGTGACAGATGTTAAAGCTGTCTGTAGTAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGTAGCAGAATTTGTGACAGATGTTAAAGCTGTCTGTAGTAGACA  450

seq1  CCTAGACACAAAGTAAATTCCTAGCTCTTCAGTAGTTCGCAATTCCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACACAAAGTAAATTCCTAGCTCTTCAGTAGTTCGCAATTCCCTAT  500

seq1  ATTATTTGAGAGATTCTACAATAGTGGATCAAAACATTATTTGATCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGAGAGATTCTACAATAGTGGATCAAAACATTATTTGATCAGAA  550

seq1  TCATAGCTATTTTATTAGAATCTATAAAAAGTACTGTAAGTTCATGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCTATTTTATTAGAATCTATAAAAAGTACTGTAAGTTCATGAGCA  600

seq1  TAACTAGATAGACTTCCTAGATGTCAGAAATTCTTTACCCAAAAGAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGATAGACTTCCTAGATGTCAGAAATTCTTTACCCAAAAGAACAG  650

seq1  TTTCGCCAACTTGATAATGTATGAAAATAACAAATCATAAAACTATCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGCCAACTTGATAATGTATGAAAATAACAAATCATAAAACTATCACT  700

seq1  AAAATCAGACACGATAAGCATGATGAA-TTTTGCATGCTTATGTGAACAT  749
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAATCAGACACGATAAGCATGATGAATTTTTGCATGCTTATGTGAACAT  750

seq1  TTTAACTGCTTAAATTTATTTTACTAGTAATATTGATCATTAATTAATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGCTTAAATTTATTTTACTAGTAATATTGATCATTAATTAATTT  800

seq1  GTTATCTCAGTTAGTTCACACTCATTTGCCTCCGTTCCCTTCTGAGATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCAGTTAGTTCACACTCATTTGCCTCCGTTCCCTTCTGAGATCA  850

seq1  TAGGAAAATAATAAAATAAATACATGACTGTGTATCTATAGAGGAGCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAATAATAAAATAAATACATGACTGTGTATCTATAGAGGAGCTAA  900

seq1  AAT-ATGCAACCCATGGAGCGTATGCACAG-AAGAAAG-TGAAGCCGAAA  946
      ||| |||||||||||||||||||||||||| ||||||| |||||||||||
seq2  AATAATGCAACCCATGGAGCGTATGCACAGAAAGAAAGTTGAAGCCGAAA  950

seq1  AAGTG-TCTGAGGCAGGTGGATCACAGATTC-TTGTAGAACA-TGAGACC  993
      ||||| ||||||||| ||||||||||||||| |||||||||| |||||||
seq2  AAGTGTTCTGAGGCA-GTGGATCACAGATTCTTTGTAGAACATTGAGACC  999

seq1  TAGTGGCTGCTGTAGAATTT--CTAGAAC-TGACTG-CAAATTAAAAC-T  1038
      ||||||||||||||||||||   |||||| |||||| ||||||||||| |
seq2  TAGTGGCTGCTGTAGAATTTTCTTAGAACTTGACTGCCAAATTAAAACTT  1049

seq1  ATTT-GAGTTCATATTACCCTAGACAGAA-TAGC-AAAGGGCAACAAAAC  1085
      |||| |||||||||||||||||||||||| |||| |||||||||||||||
seq2  ATTTGGAGTTCATATTACCCTAGACAGAATTAGCAAAAGGGCAACAAAAC  1099

seq1  AAATGACA-GCACATGCTGT--GAGATTGGTGGGA--GGAACACTTATGT  1130
      || ||||| ||  |||||||  |||||||||||||  | |||||||||||
seq2  AATTGACAGGCCAATGCTGTTGGAGATTGGTGGGAAGGAAACACTTATGT  1149

seq1  GT  1132
      ||
seq2  GT  1151


seq1: chr19_18751034_18752140
seq2: B6Ng01-330O02.g_71_1189 (reverse)

seq1  TCTCATCCTTTTTCCCCAG-AGAGGGTGT-TCCTTTCCATGC-ACATTGG  47
      ||||||||||||  ||||| |||||| || ||||| |||||| ||| |||
seq2  TCTCATCCTTTTCACCCAGAAGAGGGGGTGTCCTTACCATGCAACAATGG  50

seq1  --CTTGGC-TCCTGAACAATGTGTTGTTTGATG-TTATATAAAA--TGAA  91
        |||||| |||||||||||||| ||||||||| ||||||||||  ||||
seq2  GCCTTGGCTTCCTGAACAATGTGGTGTTTGATGTTTATATAAAAATTGAA  100

seq1  GTTAT-GTATCATGT-GTACTTTAATAGT-GCTATTTTAAACAAATATTT  138
      ||||| ||||||||| ||||||||||||| ||||||||||||||||||||
seq2  GTTATGGTATCATGTGGTACTTTAATAGTGGCTATTTTAAACAAATATTT  150

seq1  GTGCTCCTGATTTTA-TCTTTTAGAGTTGTAGCCGTGCTTTGTTTATTTC  187
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGCT-CTGATTTTATTCTTTTAGAGTTGTAGCCGTGCTTTGTTTATTTC  199

seq1  TCTGCATTCCCCAGTATGATTTCTTCATCATGACCACTGATAATAGGCTT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTCCCCAGTATGATTTCTTCATCATGACCACTGATAATAGGCTT  249

seq1  TCTGTTGTTCGTGGGGTTTTGTGTTTATTTGACAGTGCTGTGGTGAAGGC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTTCGTGGGGTTTTGTGTTTATTTGACAGTGCTGTGGTGAAGGC  299

seq1  AGCTTGTGTTTCTTGAGTATGTTTAAGAGTATAATTCCTAGATCATAGGG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGTTTCTTGAGTATGTTTAAGAGTATAATTCCTAGATCATAGGG  349

seq1  TTGATCAACATTAAGCTTTACTAAGGATGCTGTTATTTTGCAAAGTGGTT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAACATTAAGCTTTACTAAGGATGCTGTTATTTTGCAAAGTGGTT  399

seq1  ATAGTCATTTCTGGATTCACCATTGGTATGTAAATGTTCTAATTTTTCTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCATTTCTGGATTCACCATTGGTATGTAAATGTTCTAATTTTTCTA  449

seq1  TAATTCTCAAATGTTTGACCTAGTTGGATTTATAGGTTTTTGTCAATTTG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCAAATGTTTGACCTAGTTGGATTTATAGGTTTTTGTCAATTTG  499

seq1  GTTGATATAAAATGACATTTACCTTTTAAAAATGAGGCTTTCCTCTTTAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATATAAAATGACATTTACCTTTTAAAAATGAGGCTTTCCTCTTTAC  549

seq1  TTCATAAATAAGCAATCCTCAACGTAACCATTAGAAAACCTTTGGAATGC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATAAGCAATCCTCAACGTAACCATTAGAAAACCTTTGGAATGC  599

seq1  AAATTGTGACGATTACATTTGAAACCCTAAAGAATTTTAATTTTTCATTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGACGATTACATTTGAAACCCTAAAGAATTTTAATTTTTCATTT  649

seq1  GTTTAATATTACTTTTGTAGTATATAATTTATAGTTTTCAAAATTCAACT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATATTACTTTTGTAGTATATAATTTATAGTTTTCAAAATTCAACT  699

seq1  AGGCTAGCCTTTAGTTAGCTTCCAAACATACTCTATATTCTACATTTTTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCTTTAGTTAGCTTCCAAACATACTCTATATTCTACATTTTTA  749

seq1  CTGTTTTGATTCTGGGGATTAAATCTAGGCCATTTTAACTTTTACCGCAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGATTCTGGGGATTAAATCTAGGCCATTTTAACTTTTACCGCAG  799

seq1  CATGTTACTGCTTGATGATGTAGCTACGCTATCATCCAGTTTTGCACAAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACTGCTTGATGATGTAGCTACGCTATCATCCAGTTTTGCACAAA  849

seq1  ATGTTTAATTTGAAAATTGAAATTAGAAAAATAATTATAAATTAAACTTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAATTTGAAAATTGAAATTAGAAAAATAATTATAAATTAAACTTT  899

seq1  GATGTGTCCTCTTATTATTGCACATGTCTTCCTATTCATTATAAGCCATT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCCTCTTATTATTGCACATGTCTTCCTATTCATTATAAGCCATT  949

seq1  TTGTTGTTGTCGGTTCCTCTGAGAAGTATTCCTCATGAAGTAAAAGCATA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTCGGTTCCTCTGAGAAGTATTCCTCATGAAGTAAAAGCATA  999

seq1  GCAGACGTTCCTTCAAACGTCAAAGGGTGGGGCCTAAGGGTGGTGTCCAG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACGTTCCTTCAAACGTCAAAGGGTGGGGCCTAAGGGTGGTGTCCAG  1049

seq1  CAGGACTTCGGAATAACAGTTATGCAAGCTGACAGTCTTAAAATGAGCTT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTCGGAATAACAGTTATGCAAGCTGACAGTCTTAAAATGAGCTT  1099

seq1  GGCCTCTGATGAGAGAATTC  1107
      ||||||||||||||||||||
seq2  GGCCTCTGATGAGAGAATTC  1119


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