BAC Information

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BAC

Clone NameB6Ng01-331H21
Chromosome19 (Build37)
Map Location 48,983,604 - 49,101,293
singlet/doubletdoublet
Overlap genenone
Upstream geneBC063749, Gm969, LOC670576, Sorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331H21.bB6Ng01-331H21.g
ACCGA117843GA117844
length1,110695
definitionB6Ng01-331H21.b B6Ng01-331H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,983,604 - 48,984,729)(49,100,600 - 49,101,293)
sequence
gaattccagttttggttgggtaatttttgtaaacactttctggaatcaag
aatttatcattgaatgattttggggagaagtgagggaaatctattttttg
gcatctcaaacttttcattactgggagaaacaatgaaagcaaaaattaag
aatggaccagttacattcatagatttgtgctacttcaaaccttcattaga
gacgctgcttatttgagtctgtaatgaataatccagaggctcagaacagt
tcaacatgttgagaaaaagtgagtgtaactgtttagccacagagtctata
ttcaggcatagaatgtgtgtttgcttgtatatataaatgtgcatttatag
gtgtacacacacgcacacatatttatgtacataatatattttcccaccct
aaggctcagggaccattaaggaagagggaacagaatgaaagctcctattt
gaggctgtgagtttatggtgattgctctgcaccatagagtgatgaggaat
gacgtaccacttttgcattgtacctcagttcttcctgcctacttctgtcc
tttccacacttgcaggattataattatcttaccattgtaatacaattttg
gttggagtttatacactggcgcatgcttttgtacatgaatagagcgattt
gtgttcatatgtatggtgacattcagtgacgactcaggcatcattctaga
gaagagtattatggtgatgcttcttggaggcaccacttttgagttaatgg
cctttatataaaagtttacttagttttcaccttccatctaaactgaacaa
aaataaatgcagaatcctttagaacacaatttttttttctagaagcttag
ataatttgccttttcctttgaagaggctgtctagtcccctcaccctgtat
ctctcctatggccttgtagaactctgaagttcaaacatgacctatgggta
ctttgtttacttctttgcatttctctgcgcttctgaagagtattttttct
ttctgcttatatccatttaaaaaagaaaaacacactgaagagagtctcaa
gtatgtatgggaggaatcatgagcttgaacttctaacactttattggtga
tatacttgat

gaattctcactaggcaaatatgacattctcacatgaaaccactaaattct
gtggattttcctgtcttattttataaaactatgttaacttcttatgtcgc
ttaccataatttaggtcatcctatttattacttgaattcctacaatggtt
tactcatttgttctcctgttgttaagtttgcatcataacttcaaattcat
tctttgttctgtagctgaaaagatctttctccaatatatgactataacaa
aggtatgacctttcaaattttcccatacctctctaactatttccctacaa
actcaaactgcatttgcaagtgtattctatgatttctcttttctattcat
gatggacattttctcattcttatacacttctttttgtaacatgacatttc
acatacagtatcatttggggatatcatattatgaacctggatcatattca
cttctctgttctcctaagtacacacccacccttatgatctccctcacact
ccccaaaaagaagaagaagaggaggaggaagaagatgaaggaggaggagg
aggaggaagaagaggaatcaaatccaatttgtgttgtttgtatactcact
ggagcatggtcaaacttttagtgcccagtccttaaagaaatttttcctaa
tggatggattcttcacccactcatgtcagaaatcagcttactagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48983604_48984729
seq2: B6Ng01-331H21.b_48_1157

seq1  GAATTCCAGTTTTGGTTGGGTAATTTTTGTAAACACTTTCTGGAATCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTTGGTTGGGTAATTTTTGTAAACACTTTCTGGAATCAAG  50

seq1  AATTTATCATTGAATGATTTTGGGGAGAAGTGAGGGAAATCTATTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCATTGAATGATTTTGGGGAGAAGTGAGGGAAATCTATTTTTTG  100

seq1  GCATCTCAAACTTTTCATTACTGGGAGAAACAATGAAAGCAAAAATTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCAAACTTTTCATTACTGGGAGAAACAATGAAAGCAAAAATTAAG  150

seq1  AATGGACCAGTTACATTCATAGATTTGTGCTACTTCAAACCTTCATTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACCAGTTACATTCATAGATTTGTGCTACTTCAAACCTTCATTAGA  200

seq1  GACGCTGCTTATTTGAGTCTGTAATGAATAATCCAGAGGCTCAGAACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTGCTTATTTGAGTCTGTAATGAATAATCCAGAGGCTCAGAACAGT  250

seq1  TCAACATGTTGAGAAAAAGTGAGTGTAACTGTTTAGCCACAGAGTCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATGTTGAGAAAAAGTGAGTGTAACTGTTTAGCCACAGAGTCTATA  300

seq1  TTCAGGCATAGAATGTGTGTTTGCTTGTATATATAAATGTGCATTTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCATAGAATGTGTGTTTGCTTGTATATATAAATGTGCATTTATAG  350

seq1  GTGTACACACACGCACACATATTTATGTACATAATATATTTTCCCACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACACACACGCACACATATTTATGTACATAATATATTTTCCCACCCT  400

seq1  AAGGCTCAGGGACCATTAAGGAAGAGGGAACAGAATGAAAGCTCCTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCAGGGACCATTAAGGAAGAGGGAACAGAATGAAAGCTCCTATTT  450

seq1  GAGGCTGTGAGTTTATGGTGATTGCTCTGCACCATAGAGTGATGAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTGAGTTTATGGTGATTGCTCTGCACCATAGAGTGATGAGGAAT  500

seq1  GACGTACCACTTTTGCATTGTACCTCAGTTCTTCCTGCCTACTTCTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTACCACTTTTGCATTGTACCTCAGTTCTTCCTGCCTACTTCTGTCC  550

seq1  TTTCCACACTTGCAGGATTATAATTATCTTACCATTGTAATACAATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACACTTGCAGGATTATAATTATCTTACCATTGTAATACAATTTTG  600

seq1  GTTGGAGTTTATACACTGGCGCATGCTTTTGTACATGAATAGAGCGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGTTTATACACTGGCGCATGCTTTTGTACATGAATAGAGCGATTT  650

seq1  GTGTTCATATGTATGGTGACATTCAGTGACGACTCAGGCATCATTCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATATGTATGGTGACATTCAGTGACGACTCAGGCATCATTCTAGA  700

seq1  GAAGAGTATTATGGTGATGCTTCTTGGAGGCACCACTTTTGAGTTAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTATTATGGTGATGCTTCTTGGAGGCACCACTTTTGAGTTAATGG  750

seq1  CCTTTATATAAAAGTTTACTTAGTTTTCACCTTCCATCTAAACTGAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATATAAAAGTTTACTTAGTTTTCACCTTCCATCTAAACTGAACAA  800

seq1  AAATAAATGCAGAATCCTTTAGAACACAA-TTTTTTTTCTAGAAGCTTAG  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAATAAATGCAGAATCCTTTAGAACACAATTTTTTTTTCTAGAAGCTTAG  850

seq1  ATAATTTGCCTTTTCCTTTGAAGAGGCTGTCTAGTCCCCTCACCCTGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGCCTTTTCCTTTGAAGAGGCTGTCTAGTCCCCTCACCCTGTAT  900

seq1  CTCTCCTATGGCCTTGTAGAACTCTGAAGTTCAAACATGACCTATGGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTATGGCCTTGTAGAACTCTGAAGTTCAAACATGACCTATGGGTA  950

seq1  CTTTTGTTTACTTCTTTGCATTTCTCTGCGCTTCCTGAAAGAAGTATTTT  999
      | ||||||||||||||||||||||||||||||| |||||   |||| |||
seq2  C-TTTGTTTACTTCTTTGCATTTCTCTGCGCTT-CTGAA--GAGTA-TTT  995

seq1  TTTCTTTTCTTGCTTTATATCCATTTAAAAAAGAAAAACACACTGAAGAG  1049
      |||||||   ||| ||||||||||||||||||||||||||||||||||||
seq2  TTTCTTT--CTGC-TTATATCCATTTAAAAAAGAAAAACACACTGAAGAG  1042

seq1  AGTTCCTCAGGGTTATGTATGGGAGGGGATCATGAAGCTTTGAACTTCTA  1099
      |||  |||| |  ||||||||||| || |||||| ||| |||||||||||
seq2  AGT--CTCAAG--TATGTATGGGA-GGAATCATG-AGC-TTGAACTTCTA  1085

seq1  ACAACTTTATTTGTGATAATACTTGAT  1126
      || |||||||| ||||| |||||||||
seq2  AC-ACTTTATTGGTGAT-ATACTTGAT  1110


seq1: chr19_49100600_49101293
seq2: B6Ng01-331H21.g_67_760 (reverse)

seq1  CTAGTAAGCTGATTTCTGACATGAGTTGGTGGAGAATCCATCCATTAGGA  50
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  CTAGTAAGCTGATTTCTGACATGAGTGGGTGAAGAATCCATCCATTAGGA  50

seq1  AAAATTTCTTTAAGGACTGGGCACTAAAAGTTTGACCATGCTCCAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTTTAAGGACTGGGCACTAAAAGTTTGACCATGCTCCAGTGAG  100

seq1  TATACAAACAACACAAATTGGATTTGATTCCTCTTCTTCCTCCTCCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAACAACACAAATTGGATTTGATTCCTCTTCTTCCTCCTCCTCCT  150

seq1  CCTCCTTCATCTTCTTCCTCCTCCTCTTCTTCTTCTTTTTGGGGAGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCATCTTCTTCCTCCTCCTCTTCTTCTTCTTTTTGGGGAGTGTG  200

seq1  AGGGAGATCATAAGGGTGGGTGTGTACTTAGGAGAACAGAGAAGTGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATCATAAGGGTGGGTGTGTACTTAGGAGAACAGAGAAGTGAATA  250

seq1  TGATCCAGGTTCATAATATGATATCCCCAAATGATACTGTATGTGAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAGGTTCATAATATGATATCCCCAAATGATACTGTATGTGAAATG  300

seq1  TCATGTTACAAAAAGAAGTGTATAAGAATGAGAAAATGTCCATCATGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTACAAAAAGAAGTGTATAAGAATGAGAAAATGTCCATCATGAAT  350

seq1  AGAAAAGAGAAATCATAGAATACACTTGCAAATGCAGTTTGAGTTTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGAAATCATAGAATACACTTGCAAATGCAGTTTGAGTTTGTAG  400

seq1  GGAAATAGTTAGAGAGGTATGGGAAAATTTGAAAGGTCATACCTTTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGTTAGAGAGGTATGGGAAAATTTGAAAGGTCATACCTTTGTTA  450

seq1  TAGTCATATATTGGAGAAAGATCTTTTCAGCTACAGAACAAAGAATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATATATTGGAGAAAGATCTTTTCAGCTACAGAACAAAGAATGAAT  500

seq1  TTGAAGTTATGATGCAAACTTAACAACAGGAGAACAAATGAGTAAACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTATGATGCAAACTTAACAACAGGAGAACAAATGAGTAAACCAT  550

seq1  TGTAGGAATTCAAGTAATAAATAGGATGACCTAAATTATGGTAAGCGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAATTCAAGTAATAAATAGGATGACCTAAATTATGGTAAGCGACA  600

seq1  TAAGAAGTTAACATAGTTTTATAAAATAAGACAGGAAAATCCACAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTTAACATAGTTTTATAAAATAAGACAGGAAAATCCACAGAATT  650

seq1  TAGTGGTTTCATGTGAGAATGTCATATTTGCCTAGTGAGAATTC  694
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTTCATGTGAGAATGTCATATTTGCCTAGTGAGAATTC  694


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