BAC Information

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BAC

Clone NameB6Ng01-332C22
Chromosome19 (Build37)
Map Location 37,559,881 - 37,560,987
singlet/doubletsinglet
Overlap genenone
Upstream geneHectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex
Downstream geneExoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332C22.bB6Ng01-332C22.g
ACCGA118358GA118359
length1,1491,221
definitionB6Ng01-332C22.b B6Ng01-332C22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgagtgtatgaatgagtgggtctgtttcttgtgccttctcttg
gtctcttttccttctggttgtttgttttggccaattccaatgtgttagct
ttaatcttattatattttattttattaaacaaaaaccagacatttagtaa
cctccataggttgggaatttggcttgggtggttgtgcctttggggcctgt
catgaagtcagtcaagatgttggctgaggctgcaggcatctgaagggctt
ccaagacggcacgttttcatgctgttggatcaccacatgggcatgaccac
agagctgcttgagtagccccacagtatggtgactggtttcctcagagcaa
gcgagtctttactgcgaaaggaggaagatggactccttgacttttatggc
ctattctcagaagtcaaacatggcaggtgctccatctgtctgtcaagagc
ggattattaagtctgccggacatcgaaaggaaggtgagttagcctctatt
gtttgaaaatgattgtaaaatacttttaaagtgttttgttttagaaacga
ctacaactgttctagtctcaggactcagtacagtgcctgccagctactgg
gtgtttatttgtagtttggaaaatatcagtctctctcttagatatgggta
ctagcaatgggacagtgactcaaaggcagaaggttacggtagggaattgg
cgtttgagctttagtgcctttctcacaggtcccagcaggaaatgacttgg
ccatcttaagtcacttggccaggcacagatgtgagccactggtcttcctt
caggtcttgatataatcttgatagaagagctcagagaactcacaaaggtc
ttgagaatagacaaagttagtgaattagaattctacctccatatttataa
tactaatctctaattgttatatcgaggcagatatttacatatctactcta
catatccctgaagacttctgtgtctcttgatcaaacagatccaggtagag
cgtgatgtgcacaccttgctgggatacaatatgaacaggaatgctggaga
gcagatactcagaaaacctctcctctcttttcatcttgtgattctcttga
atcttctcctcagatttgctcagctgtcaatggtgactccactgtaatc
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagtctgatcttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaatatgtttggccttgaattttttctggtgttagg
agcccttttgttccttttcacatgttatcaagtgattaagatagggctga
aaattctagaggaaattcaggacaagctatcagaagtaaagcggggagag
agagcaggagcaaagagaaaatatggtacacaaaataagcgtacaggcct
ttccacgggtcttgaacctgaggaaaagttaaggttaggtaggaatacct
ggagagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaa
ttagcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggct
cggggagccagctcttggtagctctgaatcagatgatgaattctcctctg
aagaaacagactgggaggaagaagcagctcattatgagaaaaaagggtac
cagccaggtaaagtgctagctaatcagttaaggaagccaaaagcggctgg
cgaaggccagtttgctgattggcctcagggcagtcggcttcaaggtccgc
cctatgcggagcccccgccctgcgtagtgcgtcagcaatgcgcagagaga
tgcgcagagaggcagtgcgcagagaggcagtgcgcagactcattcattcc
cagagaggaacaaaggaaaatacaacaggcatttccggtctttgaaggag
ccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaagaa
attgccgagtcggtccgtaaatacggaacccaatgctaattttaccttgg
tgcagttagacaggctcgccggcatggcactaactcctgctgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatgggaatgga
gagctctttggcatgaagctgcacagcgcagcctcgagcaaacgcagctg
ctttgactccagagcagagaagatgggactttgacttgttaacggtcagg
agcttatttctgctgatcaacaaactaccaatgggagctttagctgaatt
cttctaccgcttattagggccttgaaggcgccgctctctctccgaagcca
ggtggtgatagaaccacactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37559881_37560987
seq2: B6Ng01-332C22.b_98_1191

seq1  TTTTCCTTCTGGTTGTTTGTTTTGGCCAATTCCAATGTGTTAGCTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTCTGGTTGTTTGTTTTGGCCAATTCCAATGTGTTAGCTTTAAT  50

seq1  CTTATTATATTTTATTTTATTAAACAAAAACCAGACATTTAGTAACCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATATTTTATTTTATTAAACAAAAACCAGACATTTAGTAACCTCC  100

seq1  ATAGGTTGGGAATTTGGCTTGGGTGGTTGTGCCTTTGGGGCCTGTCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTGGGAATTTGGCTTGGGTGGTTGTGCCTTTGGGGCCTGTCATGA  150

seq1  AGTCAGTCAAGATGTTGGCTGAGGCTGCAGGCATCTGAAGGGCTTCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCAAGATGTTGGCTGAGGCTGCAGGCATCTGAAGGGCTTCCAAG  200

seq1  ACGGCACGTTTTCATGCTGTTGGATCACCACATGGGCATGACCACAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCACGTTTTCATGCTGTTGGATCACCACATGGGCATGACCACAGAGC  250

seq1  TGCTTGAGTAGCCCCACAGTATGGTGACTGGTTTCCTCAGAGCAAGCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAGTAGCCCCACAGTATGGTGACTGGTTTCCTCAGAGCAAGCGAG  300

seq1  TCTTTACTGCGAAAGGAGGAAGATGGACTCCTTGACTTTTATGGCCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTGCGAAAGGAGGAAGATGGACTCCTTGACTTTTATGGCCTATT  350

seq1  CTCAGAAGTCAAACATGGCAGGTGCTCCATCTGTCTGTCAAGAGCGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGTCAAACATGGCAGGTGCTCCATCTGTCTGTCAAGAGCGGATT  400

seq1  ATTAAGTCTGCCGGACATCGAAAGGAAGGTGAGTTAGCCTCTATTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTCTGCCGGACATCGAAAGGAAGGTGAGTTAGCCTCTATTGTTTG  450

seq1  AAAATGATTGTAAAATACTTTTAAAGTGTTTTGTTTTAGAAACGACTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTGTAAAATACTTTTAAAGTGTTTTGTTTTAGAAACGACTACA  500

seq1  ACTGTTCTAGTCTCAGGACTCAGTACAGTGCCTGCCAGCTACTGGGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTAGTCTCAGGACTCAGTACAGTGCCTGCCAGCTACTGGGTGTT  550

seq1  TATTTGTAGTTTGGAAAATATCAGTCTCTCTCTTAGATATGGGTACTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAGTTTGGAAAATATCAGTCTCTCTCTTAGATATGGGTACTAGC  600

seq1  AATGGGACAGTGACTCAAAGGCAGAAGGTTACGGTAGGGAATTGGCGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGACAGTGACTCAAAGGCAGAAGGTTACGGTAGGGAATTGGCGTTT  650

seq1  GAGCTTTAGTGCCTTTCTCACAGGTCCCAGCAGGAAATGACTTGGCCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTAGTGCCTTTCTCACAGGTCCCAGCAGGAAATGACTTGGCCATC  700

seq1  TTAAGTCACTTGGCCAGGCACAGATGTGAGCCACTGGTCTTCCTTCAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCACTTGGCCAGGCACAGATGTGAGCCACTGGTCTTCCTTCAGGT  750

seq1  CTTGATATAATCTTGATAGAAGAGCTCAGAGAACTCAC-AAGGTCTTGAG  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTGATATAATCTTGATAGAAGAGCTCAGAGAACTCACAAAGGTCTTGAG  800

seq1  AATAGACAAAGTTAGTGAATTAGAATTCTACCTCCATATTTATAATACTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACAAAGTTAGTGAATTAGAATTCTACCTCCATATTTATAATACTA  850

seq1  ATCTCTAATTGTTATATCGAGGCAGATAATTTACATATCTACTCTACATA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCTCTAATTGTTATATCGAGGCAGAT-ATTTACATATCTACTCTACATA  899

seq1  TCCCTGAAGACTTCTTGTGGTCTCTTGATCAAACAGATCCAGGTTAGAGC  949
      |||||||||||||| ||| |||||||||||||||||||||||| ||||||
seq2  TCCCTGAAGACTTC-TGT-GTCTCTTGATCAAACAGATCCAGG-TAGAGC  946

seq1  GTGATGTGCACACCTTTGCTGGGATACAATATGAACAGG-ATGCTGGAAG  998
      |||||||||||||| |||||||||||||||||||||||| ||||||| ||
seq2  GTGATGTGCACACC-TTGCTGGGATACAATATGAACAGGAATGCTGG-AG  994

seq1  AGCAGGATACTCAAGAAAACCTCTCCTCTCTTTTCCTTCTTTGTGATTCT  1048
      |||| ||||||| |||||||||||||||||||||| |   ||||||||||
seq2  AGCA-GATACTC-AGAAAACCTCTCCTCTCTTTTCAT--CTTGTGATTCT  1040

seq1  CTTTGGAATCTTCTCCTCAGATTTTGCTCAGCTGGTCATGGTGGCCTCCA  1098
      |||  |||||||||||||||| ||||||||||||   ||||| | |||||
seq2  CTT--GAATCTTCTCCTCAGA-TTTGCTCAGCTGTCAATGGT-GACTCCA  1086

seq1  TCTGTAATC  1107
       ||||||||
seq2  -CTGTAATC  1094