BAC Information

Click to search

BAC

Clone NameB6Ng01-332E23
Chromosome19 (Build37)
Map Location 5,257,516 - 5,442,380
singlet/doubletdoublet
Overlap genePacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425
Upstream geneSsh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424
Downstream geneFosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332E23.bB6Ng01-332E23.g
ACCGA118447GA118448
length1,040748
definitionB6Ng01-332E23.b B6Ng01-332E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,257,516 - 5,258,550)(5,441,638 - 5,442,380)
sequence
gaattcaatcaagaacagtggtgctcctctgtaatcccagtatttgagag
actgaggctggaagatggagagttctaggccagtctgggatatacagaaa
gaccaagtaaaaagcaagcaagcaagcaagccagccagccagcaagcaag
caagcagaaattaacccacagtcttgcaatagtcccaatcagaatctcat
gacaggatagcacacacctttaaaccctgcactcaggaggcagaggctag
tggatctctgtgagtttcaggctagcctgggctgcacagtacattcaagg
acagccaaagcaaacagtgagaacctgtctttaaaagagagagagagccg
ggcgttggtggtgctcgcctttaatcccagcacttgggaggcagaggcaa
gcagatttctgagttcgaggccagcctggtctacaaagtgagttccagga
cagccaggactacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaa
aaaaaaaaaagagagagagagagagaaatgaaagaaattaattggcaatc
aaggacagtagaaagaattaattttctatgtgcaacacatgtaattaaca
tgtattaatcctaccttaattctcacagctctgtgaaataattattatac
ccattttatagttgataaaatggaaacattagaaaggttaaataattttg
ctcaaagttactcaaatactaaacagcagagtcaaaattcaaagcccagg
agggattctaaaacccaactcacagtcactatattaagcatccccacagt
gcccatagtgacgtgagaacagcatttcatccaacaaggcataaagtggc
ccatagtgctgtcagctgtgagagcagccaaagcttagagagacacattt
ctatagaaaccctttcttctgacttgagaatgccagctctgctcatctaa
actgggtggctaatgggaggcagaggcaggcagatttctgagtccgaggc
cagcctggtctacaaagggagttcatggactagccagggc
gaattccaggccagtcagggctacatagtaagactttggaataaaagtgt
gtgtgtgtgtgtgtgtgtgtaggatggttttcagccctgggtggtttttt
ttttttttttttttttgatctgtttataaagtatagactttctggaactc
atattctcctggagcctcaggctctggagtgttagaactgcatgcttgta
taactatgcttgtataactatgcgtgtataactatacgtgtataattatg
cgtgtataactatgcatgtataaccattcgtgtataactatgcgtgtata
accatgtgtgtctaactatgcctggggataatgtggttttgctattgtct
gtttcatttggagactgggtcttctgcagctcaaactagcctcaaacatg
ctgtatagcagaggctggccttcaactactgctgctcctcccccggtccc
cgaatgtcaagattacagcgctgcgtttgacacccagcttgctgttgtcc
ttctgtttggttttgttttcactacggggtcttaccatgtcacttagctg
gccgagagcccccatgcccagcaataatgtccttttgattcacaaaagta
ttttgtgaatacaaaagtatgtatttttttcatttgtttgatggcgtttc
tgatgataaatctaagagtcagccaagcagtggtagaacacaccttttat
cccatcactcaggagacagaggctggtggaatcttttgagttttgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5257516_5258550
seq2: B6Ng01-332E23.b_45_1084

seq1  GAATTCAATCAAGAACAGTGGTGCTCCTCTGTAATCCCAGTATTTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCAAGAACAGTGGTGCTCCTCTGTAATCCCAGTATTTGAGAG  50

seq1  ACTGAGGCTGGAAGATGGAGAGTTCTAGGCCAGTCTGGGATATACAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTGGAAGATGGAGAGTTCTAGGCCAGTCTGGGATATACAGAAA  100

seq1  GACCAAGTAAAAAGCAAGCAAGCAAGCAAGCCAGCCAGCCAGCAAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTAAAAAGCAAGCAAGCAAGCAAGCCAGCCAGCCAGCAAGCAAG  150

seq1  CAAGCAGAAATTAACCCACAGTCTTGCAATAGTCCCAATCAGAATCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAAATTAACCCACAGTCTTGCAATAGTCCCAATCAGAATCTCAT  200

seq1  GACAGGATAGCACACACCTTTAAACCCTGCACTCAGGAGGCAGAGGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATAGCACACACCTTTAAACCCTGCACTCAGGAGGCAGAGGCTAG  250

seq1  TGGATCTCTGTGAGTTTCAGGCTAGCCTGGGCTGCACAGTACATTCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTCTGTGAGTTTCAGGCTAGCCTGGGCTGCACAGTACATTCAAGG  300

seq1  ACAGCCAAAGCAAACAGTGAGAACCTGTCTTTAAAAGAGAGAGAGAGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAAGCAAACAGTGAGAACCTGTCTTTAAAAGAGAGAGAGAGCCG  350

seq1  GGCGTTGGTGGTGCTCGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTGGTGGTGCTCGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAA  400

seq1  GCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGA  450

seq1  CAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAA  500

seq1  AAAAAAAAAAGAGAGAGAGAGAGAGAAATGAAAGAAATTAATTGGCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAGAGAGAGAGAGAGAAATGAAAGAAATTAATTGGCAATC  550

seq1  AAGGACAGTAGAAAGAATTAATTTTCTATGTGCAACACATGTAATTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGTAGAAAGAATTAATTTTCTATGTGCAACACATGTAATTAACA  600

seq1  TGTATTAATCCTACCTTAATTCTCACAGCTCTGTGAAATAATTATTATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAATCCTACCTTAATTCTCACAGCTCTGTGAAATAATTATTATAC  650

seq1  CCATTTTATAGTTGATAAAATGGAAACATTAGAAAGGTTAAATAA-TTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCATTTTATAGTTGATAAAATGGAAACATTAGAAAGGTTAAATAATTTTG  700

seq1  CTCAAAGTTACTCAAATACTAAACAGCAGAGTCAAAATTCAAAG-CCAGG  748
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCAAAGTTACTCAAATACTAAACAGCAGAGTCAAAATTCAAAGCCCAGG  750

seq1  A-GGATTCTAAAACCCAAACTCACAGTCACTATATTAAGCATCCCCACAG  797
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGGATTCTAAAACCC-AACTCACAGTCACTATATTAAGCATCCCCACAG  799

seq1  TGCCCATAGTGACGTGAGAACAGCATTCCATCCAACAAGGCATAAAGTGG  847
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGCCCATAGTGACGTGAGAACAGCATTTCATCCAACAAGGCATAAAGTGG  849

seq1  CCCATAGTGCTGTCAGCTGTGAGAGCAGCCAAAGCTTAGAGAGACACATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGTGCTGTCAGCTGTGAGAGCAGCCAAAGCTTAGAGAGACACATT  899

seq1  TCTATAGAAACCC-TTCTTCTGACTTGAGAATGCCAGCTCTGCTCATCTA  946
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTATAGAAACCCTTTCTTCTGACTTGAGAATGCCAGCTCTGCTCATCTA  949

seq1  AACTGGGTGGCTAA-GGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGG  995
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  AACTGGGTGGCTAATGGGAGGCAGAGGCAGGCAGATTTCTGAGTCCGAGG  999

seq1  CCAGCCTGGTCTACAAAGTGAGTTCCAGGAC-AGCCAGGGC  1035
      |||||||||||||||||| ||||||  |||| |||||||||
seq2  CCAGCCTGGTCTACAAAGGGAGTTCATGGACTAGCCAGGGC  1040

seq1: chr19_5441638_5442380
seq2: B6Ng01-332E23.g_67_814 (reverse)

seq1  CCTC-AAACTC-AAAGA-TCCACCAGCCTCTGTCTCCTGAGTGATGGGAT  47
      |||| |||||| ||||| ||||||||||||||||||||||||||||||||
seq2  CCTCAAAACTCAAAAGATTCCACCAGCCTCTGTCTCCTGAGTGATGGGAT  50

seq1  -AAAGGTGTGTTCTACCACTGCTTGGCTGACTCTTAGATTTATCATCAGA  96
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGTGTTCTACCACTGCTTGGCTGACTCTTAGATTTATCATCAGA  100

seq1  AACGCCATC-AACAAATGAAAAAAATACATACTTTTGTATTCACAAAATA  145
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCATCAAACAAATGAAAAAAATACATACTTTTGTATTCACAAAATA  150

seq1  CTTTTGTGAATCAAAAGGACATTATTGCTGGGCATGGGGGCTCTCGGCCA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGAATCAAAAGGACATTATTGCTGGGCATGGGGGCTCTCGGCCA  200

seq1  GCTAAGTGACATGGTAAGACCCCGTAGTGAAAACAAAACCAAACAGAAGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTGACATGGTAAGACCCCGTAGTGAAAACAAAACCAAACAGAAGG  250

seq1  ACAACAGCAAGCTGGGTGTCAAACGCAGCGCTGTAATCTTGACATTCGGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCAAGCTGGGTGTCAAACGCAGCGCTGTAATCTTGACATTCGGG  300

seq1  GACCGGGGGAGGAGCAGCAGTAGTTGAAGGCCAGCCTCTGCTATACAGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGGGGAGGAGCAGCAGTAGTTGAAGGCCAGCCTCTGCTATACAGCA  350

seq1  TGTTTGAGGCTAGTCTGAGCTGCAGAAGACCCAGTCTCCAAATGAAACAG  395
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGGCTAGTTTGAGCTGCAGAAGACCCAGTCTCCAAATGAAACAG  400

seq1  ACAATAGCAAAACCACATTATCCCCAGGCATAGTTAGACACACATGGTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGCAAAACCACATTATCCCCAGGCATAGTTAGACACACATGGTTA  450

seq1  TACACGCATAGTTATACACGAATGGTTATACATGCATAGTTATACACGCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCATAGTTATACACGAATGGTTATACATGCATAGTTATACACGCA  500

seq1  TAATTATACACGTATAGTTATACACGCATAGTTATACAAGCATAGTTATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATACACGTATAGTTATACACGCATAGTTATACAAGCATAGTTATA  550

seq1  CAAGCATGCAGTTCTAACACTCCAGAGCCTGAGGCTCCAGGAGAATATGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGCAGTTCTAACACTCCAGAGCCTGAGGCTCCAGGAGAATATGA  600

seq1  GTTCCAGAAAGTCTATACTTTATAAACAGATCAAAAAAAAAAAAAAAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAAAGTCTATACTTTATAAACAGATCAAAAAAAAAAAAAAAAAA  650

seq1  AAAACCACCCAGGGCTGAAAACCATCCTACACACACACACACACACACAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACCCAGGGCTGAAAACCATCCTACACACACACACACACACACAC  700

seq1  ACTTTTATTCCAAAGTCTTACTATGTAGCCCTGACTGGCCTGGAATTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTCCAAAGTCTTACTATGTAGCCCTGACTGGCCTGGAATTC  748