BAC Information

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BAC

Clone NameB6Ng01-332O15
Chromosome19 (Build37)
Map Location 44,376,080 - 44,552,664
singlet/doubletdoublet
Overlap geneScd2, Scd4, Scd1
Upstream geneLOC545291, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152
Downstream geneWnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332O15.bB6Ng01-332O15.g
ACCGA118880GA118881
length4661,062
definitionB6Ng01-332O15.b B6Ng01-332O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,552,193 - 44,552,664)(44,376,080 - 44,377,147)
sequence
caacacagaaacaggcagatctctttgagttccaagccagcctggtctaa
atagcaagtttcaggccagcaaggaactcactactgcatagtgagacctt
atcttaaaaaaaaaaaaagaaaaaagaaagaaaagaaaagaaaagaaaag
aaaaaaagaagaaaggaaaggaaagggaaggaaaagaaagaaggaagaca
gacagattagagacatagagatgtaaaaactgctctctagaatgggtact
tcgaagtggcatctctcttgcatggccattattttgagcaggatatttgt
gtgactcctgggtttcacagagaactttgacaaaaactggaagaggacag
gaatgttaggatcccaagagctacgactggtgctgagagacctaaggtta
ttgctgactgcaagagaacttgatagtttcagagaggactaaatcaaacg
ggggagggggggggga
gaattcttttgagaggccataacttctttggaaagggtgaaaatgtgcct
gtgatgggaccttttgagttagttcttccgtttcctgattacctctgaca
gctcagggcagggatcattaatagaaaagcagagtcgtctccatgagtgt
aagcttcatgtgttgatttagccatgctgtataaaagctagagttacaat
tcatttcaagtatgttcctggatagcatttttatctctagagtgcttggg
cgtggcttatccattagtgacacctgtaggtgcacgttggcacatgttcc
tcgtcaccctgccaccctctgcccacctatcctctgtttttctgatttct
cctgttttgtgctggagctccccttcgcacagggttgatctgggagtcct
accagatcagttgatcgtaattgttgggtccaagctataaatccaatccc
agttgtcaggatgcatgcacgcatgcctctgccacctgtgccgcccacat
tttcctgttctttcaagttagttttccctatgcagacctgtggtttcttt
ttcttactgataagagctgttggtcagccaacgacactgttcagattggt
gcttgtatatcttggtacaacactcaatttagccagtttggatggagcta
gatatatctatatatctatacacacacacacacacacacacacatctata
tattttgatggatatatatatatatatatatacacacacacacatatata
tatatatatatataattatatatttaacttataagtacactgtaactgtc
ttcagacacaccagtagtagggcatcagatcccattgtgagccaccatgt
gggttgctgggaattgaactcaggacctctggaacagcagtcagtgctct
aaaccactgagccatctctccagctccaactttgggatatataaaagtat
ttttcctgggttgtcatgaagggtcagcagtaaagcacttacctgcaaac
tgagcagcttgagtttgatccctgagacccacctcgtggaagaagaaacg
actctgcacgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44552193_44552664
seq2: B6Ng01-332O15.b_51_522 (reverse)

seq1  TCCCCCCCCCCTCCCCCGTTTGATTTAGTCCTCTCTGAAACTATCAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCTCCCCCGTTTGATTTAGTCCTCTCTGAAACTATCAAGTT  50

seq1  CTCTTGCAGTCAGCAATAACCTTAGGTCTCTCAGCACCAGTCGTAGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCAGTCAGCAATAACCTTAGGTCTCTCAGCACCAGTCGTAGCTCT  100

seq1  TGGGATCCTAACATTCCTGTCCTCTTCCAGTTTTTGTCAAAGTTCTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCTAACATTCCTGTCCTCTTCCAGTTTTTGTCAAAGTTCTCTGT  150

seq1  GAAACCCAGGAGTCACACAAATATCCTGCTCAAAATAATGGCCATGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAGGAGTCACACAAATATCCTGCTCAAAATAATGGCCATGCAAG  200

seq1  AGAGATGCCACTTCGAAGTACCCATTCTAGAGAGCAGTTTTTACATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCCACTTCGAAGTACCCATTCTAGAGAGCAGTTTTTACATCTCT  250

seq1  ATGTCTCTAATCTGTCTGTCTTCCTTCTTTCTTTTCCTTCCCTTTCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTAATCTGTCTGTCTTCCTTCTTTCTTTTCCTTCCCTTTCCTTT  300

seq1  CCTTTCTTCTTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCTTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTTTTTCTT  350

seq1  TTTTTTTTTTTAAGATAAGGTCTCACTATGCAGTAGTGAGTTCCTTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTAAGATAAGGTCTCACTATGCAGTAGTGAGTTCCTTGCTG  400

seq1  GCCTGAAACTTGCTATTTAGACCAGGCTGGCTTGGAACTCAAAGAGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAACTTGCTATTTAGACCAGGCTGGCTTGGAACTCAAAGAGATCT  450

seq1  GCCTGTTTCTGTGTTGGAATTC  472
      ||||||||||||||||||||||
seq2  GCCTGTTTCTGTGTTGGAATTC  472

seq1: chr19_44376080_44377147
seq2: B6Ng01-332O15.g_71_1132

seq1  GAATTCTTTTGAGAGGCCATAACTTCTTTGGAAAGGGTGAAAATGTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAGAGGCCATAACTTCTTTGGAAAGGGTGAAAATGTGCCT  50

seq1  GTGATGGGACCTTTTGAGTTAGTTCTTCCGTTTCCTGATTACCTCTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGGACCTTTTGAGTTAGTTCTTCCGTTTCCTGATTACCTCTGACA  100

seq1  GCTCAGGGCAGGGATCATTAATAGAAAAGCAGAGTCGTCTCCATGAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGCAGGGATCATTAATAGAAAAGCAGAGTCGTCTCCATGAGTGT  150

seq1  AAGCTTCATGTGTTGATTTAGCCATGCTGTATAAAAGCTAGAGTTACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCATGTGTTGATTTAGCCATGCTGTATAAAAGCTAGAGTTACAAT  200

seq1  TCATTTCAAGTATGTTCCTGGATAGCATTTTTATCTCTAGAGTGCTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAAGTATGTTCCTGGATAGCATTTTTATCTCTAGAGTGCTTGGG  250

seq1  CGTGGCTTATCCATTAGTGACACCTGTAGGTGCACGTTGGCACATGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTTATCCATTAGTGACACCTGTAGGTGCACGTTGGCACATGTTCC  300

seq1  TCGTCACCCTGCCACCCTCTGCCCACCTATCCTCTGTTTTTCTGATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCACCCTGCCACCCTCTGCCCACCTATCCTCTGTTTTTCTGATTTCT  350

seq1  CCTGTTTTGTGCTGGAGCTCCCCTTCGCACAGGGTTGATCTGGGAGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTGTGCTGGAGCTCCCCTTCGCACAGGGTTGATCTGGGAGTCCT  400

seq1  ACCAGATCAGTTGATCGTAATTGTTGGGTCCAAGCTATAAATCCAATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATCAGTTGATCGTAATTGTTGGGTCCAAGCTATAAATCCAATCCC  450

seq1  AGTTGTCAGGATGCATGCACGCATGCCTCTGCCACCTGTGCCGCCCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCAGGATGCATGCACGCATGCCTCTGCCACCTGTGCCGCCCACAT  500

seq1  TTTCCTGTTCTTTCAAGTTAGTTTTCCCTATGCAGACCTGTGGTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTCTTTCAAGTTAGTTTTCCCTATGCAGACCTGTGGTTTCTTT  550

seq1  TTCTTACTGATAAGAGCTGTTGGTCAGCCAACGACACTGTTCAGATTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTGATAAGAGCTGTTGGTCAGCCAACGACACTGTTCAGATTGGT  600

seq1  GCTTGTATATCTTGGTACAACACTCAATTTAGCCAGTTTGGATGGAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTATATCTTGGTACAACACTCAATTTAGCCAGTTTGGATGGAGCTA  650

seq1  GATATATCTATATATCTATACACACACACACACACACACACACATCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATCTATATATCTATACACACACACACACACACACACACATCTATA  700

seq1  TATTTTGATGGATATATATATATATATATATACACACACACACATATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATGGATATATATATATATATATATACACACACACACATATATA  750

seq1  TATATATATATATAATTATATATTTAACTTATAAGTACACTGTAACTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATAATTATATATTTAACTTATAAGTACACTGTAACTGTC  800

seq1  TTCAGACACACCAGTAG-AGGGCATCAGATCCCATTGTGAGCCACCATGT  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCAGACACACCAGTAGTAGGGCATCAGATCCCATTGTGAGCCACCATGT  850

seq1  -GGTTGCTGGGAATTGAACTCAGGACCTCTGGAACAGCAGTCAGTGCTCT  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCTGGGAATTGAACTCAGGACCTCTGGAACAGCAGTCAGTGCTCT  900

seq1  TAACCACTGAGCCATCTCTCCAGCTCCAACTTT-GGATATTATTAAAAGT  947
       |||||||||||||||||||||||||||||||| ||||||   |||||||
seq2  AAACCACTGAGCCATCTCTCCAGCTCCAACTTTGGGATAT--ATAAAAGT  948

seq1  ATTTTTCCTGGGTTGTCATGAAGGGTCAGCAGGTAAAAGCACTTACCTGC  997
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  ATTTTTCCTGGGTTGTCATGAAGGGTCAGCAG--TAAAGCACTTACCTGC  996

seq1  CAAACCTGAGCAGCCTGAGTTTGATCCCTGAGACCCACCTCGTGGAAGGA  1047
        || ||||||||| ||||||||||||||||||||||||||||||||| |
seq2  --AAACTGAGCAGCTTGAGTTTGATCCCTGAGACCCACCTCGTGGAAGAA  1044

seq1  GAAAACCGACTCCTGCACGCT  1068
      ||||  ||||| |||||||||
seq2  GAAA--CGACT-CTGCACGCT  1062