BAC Information

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BAC

Clone NameB6Ng01-332P08
Chromosome19 (Build37)
Map Location 8,984,394 - 9,041,293
singlet/doubletdoublet
Overlap geneGanab, B3gat3, Rom1, Eml3, Mta2, Tut1
Upstream geneAB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5
Downstream geneEef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332P08.bB6Ng01-332P08.g
ACCGA118910GA118911
length1,2011,139
definitionB6Ng01-332P08.b B6Ng01-332P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,040,091 - 9,041,293)(8,984,394 - 8,985,530)
sequence
gaattccttttgttcctgttcgggttttttctgtaaagggtctgtctgtt
cagctggggcccacggccgaaaacatctgaaagtaggtctgctccgatta
aactccgtgctgttaaaacttacacaacaaagcagcacggaccaacttgc
cacgtcaccagcaccactcaggcttggctgcgccccagagggtcgggtaa
ggcagcccagttctgatacaatagtttacacatatccaaatttgaaaata
aatcttgactccagcttatgggcaatttgaactctctttcacgttaaagg
atagaaaagacaaaccctaaacccaaatttgtggttcccatcacctggag
cagcaggacaagtctcgtgtgggcaaaggttgttctcagaaatcagtgcc
tttgcctcgtggaggtggcactccctaggaaagtgctggcaagtgggaag
gagagctctgaagtggaagtcataggactgttttagagtagtcaggccag
aagctacattgaggcaaagaaaaaaggcgttaccaggaggaaaacaaaga
cctcgtaatggtcttatgagggagtatgcaaaagaacattaaatgtctgt
atgaaataaactagcagctttattgtttttgaggtttggttcctcacttg
aggagatttttaagtgcttgagggataaaaccctgtagaaaatgatgaag
accagggaacaggccttgggagtcctggagtggggccacagtgagtgtct
gctcagcctgggaggcagatgccacaaagctgaggaggggctcccccggc
ggcctctcttgctcactattgggtccttttagttcctgggtcacacgagc
ttccattgccagccactctgctcctgtggtgggacctcctctaccttctt
ccttggtttgttgctgtaatcgtctccgggcacgccgcctcccctgccat
acttgggtgccacaaggcacagcgccagctcactgatgatgggtgtgatg
cctccttcctgtctcaccctgagacccttctcagccacttcagtttcatg
ggatatgctcagctgcctgttctagaacagtttgcagtcatcaggcactc
cctcctcttgggtggttccggatgccaacaggccagtccttgaagggttc
ctcgacctattaccattcttccaacctcaatttcaattggtggttcccct
g
gaattcagttcccaacaacatggtggctcacagccatctgtaatgggatc
tgatgccctcttctgtctgatgcccttttctgtcattcaggcattcatgc
aaatagagcagtcatatacataaaacacataagtaaagacgtcttgaaag
aaagaaaagagctcccagtgtgagggaagaagacaggtattatcaggtta
ttataaggcagaggacttcgggagtggtaaatggcaagctgatgtgtggt
ccgtgaacgcttccttgaggaaatgagacttttctctctctttttttatt
tctccccttcagtttttcgagacagggtttctctgtgcggtcctagctgt
cctggaactcactctgtagaccaggctggcctcgaactcagaaatccgcc
tgcctctgcctcccaagttctaggattacaggggtagagacttgactctt
aaattaaattatagtgaggtgttaggagccagctgtgtgagactcaggag
aaagtgctgcttttgtttcaagttggcactgaaaagctgacttccctttg
tctccttcacagaccctgtttgggaagatgcttgattacctgcagggctc
tggggagactccacagacagacattcgttggatgtcagagagtggcatta
ttgatgttttcctaatgcttggcccttcggtttttgatgtctttaggcag
tatgctagtctcacaggtaggtgatatttccatttctggctagcaagtgc
tcttaagttttgctatttcttcagctccagtgaccctttcatttaaacct
gcagggacccaggcattgcccccactcttctccctcggctatcaccagag
tcgctggaactaccgggatgaggctgatgttttggaagtggatcagggtt
ttgatgatcacaacatgccttgtgatgtcattttggttggaacattgaac
atgctgatggcaagcggtacttcacttgggaaccccacccgaatttcctc
agcccctcaattatgcttgagcacttggcttccaagaaggcgaaggtaag
ggggtcctgtagctgtggtttggtctcttgcataggtttgagcatgatag
tctccaaccatttccctctgttctggtcccagcctggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9040091_9041293
seq2: B6Ng01-332P08.b_46_1246 (reverse)

seq1  CAGGGG-ACCAC--AGTGAAAATGAGGTAGAAGAAATGGTAATAGAGGTT  47
      |||||| |||||  | ||||| |||||| | |  ||||||||||   | |
seq2  CAGGGGAACCACCAATTGAAATTGAGGTTGGAAGAATGGTAATA---GGT  47

seq1  CGAGAGACACCTC-AGGACTGGGCCTTGTTGCACTCGGGACCACC--AGA  94
      ||||  || | || |||||| |||||  | |||  ||| ||||||  |||
seq2  CGAGGAACCCTTCAAGGACT-GGCCTGTTGGCATCCGGAACCACCCAAGA  96

seq1  GGAGGAGTTGCCCCTGATGACTGCAAACTG-TCTAGACAAGGCAGCTGAG  143
      |||||   ||  |||||||||||||||||| ||||||  |||||||||||
seq2  GGAGGGAGTG--CCTGATGACTGCAAACTGTTCTAGAACAGGCAGCTGAG  144

seq1  CATAATCCCATGAAACCTGAAGTGGCTGGAGAAGGGTCTCAGGGTGAGAC  193
      ||| ||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  CAT-ATCCCATGAAA-CTGAAGTGGCT-GAGAAGGGTCTCAGGGTGAGAC  191

seq1  AGGGAAGGAGGCATCACACCCATCATCAGTGAGCTGGCGCTGTGCCTTGT  243
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GGAAGGAGGCATCACACCCATCATCAGTGAGCTGGCGCTGTGCCTTGT  240

seq1  GGCA-CCAAGTATGGCAGGGGAGGCGGCGTGCCCGGAGACGATTACAGCA  292
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCAAGTATGGCAGGGGAGGCGGCGTGCCCGGAGACGATTACAGCA  290

seq1  ACAAACCAAGGAAGAAGGTAGAGGAGGTCCCACCACAGGAGCAGAGTGGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAAGGAAGAAGGTAGAGGAGGTCCCACCACAGGAGCAGAGTGGC  340

seq1  TGGCAATGGAAGCTCGTGTGACCCAGGAACTAAAAGGACCCAATAGTGAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATGGAAGCTCGTGTGACCCAGGAACTAAAAGGACCCAATAGTGAG  390

seq1  CAAGAGAGGCCGCCGGGGGAGCCCCTCCTCAGCTTTGTGGCATCTGCCTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGGCCGCCGGGGGAGCCCCTCCTCAGCTTTGTGGCATCTGCCTC  440

seq1  CCAGGCTGAGCAGACACTCACTGTGGCCCCACTCCAGGACTCCCAAGGCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGAGCAGACACTCACTGTGGCCCCACTCCAGGACTCCCAAGGCC  490

seq1  TGTTCCCTGGTCTTCATCATTTTCTACAGGGTTTTATCCCTCAAGCACTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTGGTCTTCATCATTTTCTACAGGGTTTTATCCCTCAAGCACTT  540

seq1  AAAAATCTCCTCAAGTGAGGAACCAAACCTCAAAAACAATAAAGCTGCTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTCCTCAAGTGAGGAACCAAACCTCAAAAACAATAAAGCTGCTA  590

seq1  GTTTATTTCATACAGACATTTAATGTTCTTTTGCATACTCCCTCATAAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTCATACAGACATTTAATGTTCTTTTGCATACTCCCTCATAAGA  640

seq1  CCATTACGAGGTCTTTGTTTTCCTCCTGGTAACGCCTTTTTTCTTTGCCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACGAGGTCTTTGTTTTCCTCCTGGTAACGCCTTTTTTCTTTGCCT  690

seq1  CAATGTAGCTTCTGGCCTGACTACTCTAAAACAGTCCTATGACTTCCACT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGCTTCTGGCCTGACTACTCTAAAACAGTCCTATGACTTCCACT  740

seq1  TCAGAGCTCTCCTTCCCACTTGCCAGCACTTTCCTAGGGAGTGCCACCTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTCTCCTTCCCACTTGCCAGCACTTTCCTAGGGAGTGCCACCTC  790

seq1  CACGAGGCAAAGGCACTGATTTCTGAGAACAACCTTTGCCCACACGAGAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGCAAAGGCACTGATTTCTGAGAACAACCTTTGCCCACACGAGAC  840

seq1  TTGTCCTGCTGCTCCAGGTGATGGGAACCACAAATTTGGGTTTAGGGTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGCTGCTCCAGGTGATGGGAACCACAAATTTGGGTTTAGGGTTT  890

seq1  GTCTTTTCTATCCTTTAACGTGAAAGAGAGTTCAAATTGCCCATAAGCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTATCCTTTAACGTGAAAGAGAGTTCAAATTGCCCATAAGCTG  940

seq1  GAGTCAAGATTTATTTTCAAATTTGGATATGTGTAAACTATTGTATCAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGATTTATTTTCAAATTTGGATATGTGTAAACTATTGTATCAGA  990

seq1  ACTGGGCTGCCTTACCCGACCCTCTGGGGCGCAGCCAAGCCTGAGTGGTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTGCCTTACCCGACCCTCTGGGGCGCAGCCAAGCCTGAGTGGTG  1040

seq1  CTGGTGACGTGGCAAGTTGGTCCGTGCTGCTTTGTTGTGTAAGTTTTAAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGACGTGGCAAGTTGGTCCGTGCTGCTTTGTTGTGTAAGTTTTAAC  1090

seq1  AGCACGGAGTTTAATCGGAGCAGACCTACTTTCAGATGTTTTCGGCCGTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGAGTTTAATCGGAGCAGACCTACTTTCAGATGTTTTCGGCCGTG  1140

seq1  GGCCCCAGCTGAACAGACAGACCCTTTACAGAAAAAACCCGAACAGGAAC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAGCTGAACAGACAGACCCTTTACAGAAAAAACCCGAACAGGAAC  1190

seq1  AAAAGGAATTC  1203
      |||||||||||
seq2  AAAAGGAATTC  1201

seq1: chr19_8984394_8985530
seq2: B6Ng01-332P08.g_73_1211

seq1  GAATTCAGTTCCCAACAACATGGTGGCTCACAGCCATCTGTAATGGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCAACAACATGGTGGCTCACAGCCATCTGTAATGGGATC  50

seq1  TGATGCCCTCTTCTGTCTGATGCCCTTTTCTGTCATTCAGGCATTCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCTCTTCTGTCTGATGCCCTTTTCTGTCATTCAGGCATTCATGC  100

seq1  AAATAGAGCAGTCATATACATAAAACACATAAGTAAAGACGTCTTGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGCAGTCATATACATAAAACACATAAGTAAAGACGTCTTGAAAG  150

seq1  AAAGAAAAGAGCTCCCAGTGTGAGGGAAGAAGACAGGTATTATCAGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAGCTCCCAGTGTGAGGGAAGAAGACAGGTATTATCAGGTTA  200

seq1  TTATAAGGCAGAGGACTTCGGGAGTGGTAAATGGCAAGCTGATGTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGGCAGAGGACTTCGGGAGTGGTAAATGGCAAGCTGATGTGTGGT  250

seq1  CCGTGAACGCTTCCTTGAGGAAATGAGACTTTTCTCTCTCTTTTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGAACGCTTCCTTGAGGAAATGAGACTTTTCTCTCTCTTTTTTTATT  300

seq1  TCTCCCCTTCAGTTTTTCGAGACAGGGTTTCTCTGTGCGGTCCTAGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTTCAGTTTTTCGAGACAGGGTTTCTCTGTGCGGTCCTAGCTGT  350

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  400

seq1  TGCCTCTGCCTCCCAAGTTCTAGGATTACAGGGGTAGAGACTTGACTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCAAGTTCTAGGATTACAGGGGTAGAGACTTGACTCTT  450

seq1  AAATTAAATTATAGTGAGGTGTTAGGAGCCAGCTGTGTGAGACTCAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATTATAGTGAGGTGTTAGGAGCCAGCTGTGTGAGACTCAGGAG  500

seq1  AAAGTGCTGCTTTTGTTTCAAGTTGGCACTGAAAAGCTGACTTCCCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCTGCTTTTGTTTCAAGTTGGCACTGAAAAGCTGACTTCCCTTTG  550

seq1  TCTCCTTCACAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCACAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTC  600

seq1  TGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTA  650

seq1  TTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAG  700

seq1  TATGCTAGTCTCACAGGTAGGTGATATTTCCATTTCTGGCTAGCAAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAGTCTCACAGGTAGGTGATATTTCCATTTCTGGCTAGCAAGTGC  750

seq1  TCTTAAGTTTTGCTATTTCTTCAGCTCCAGTGACCCTTTCATTTAAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGTTTTGCTATTTCTTCAGCTCCAGTGACCCTTTCATTTAAACCT  800

seq1  GCAGGGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAG  850

seq1  TCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTT  900

seq1  TTGATGATCACAACATGCCTTGTGATGTCA-TTTGGTTGG-ACATTGAAC  948
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  TTGATGATCACAACATGCCTTGTGATGTCATTTTGGTTGGAACATTGAAC  950

seq1  ATGCTGATGGCAAGCGGTACTTCACTTGGG-ACCCCACCCG-ATTTCCTC  996
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  ATGCTGATGGCAAGCGGTACTTCACTTGGGAACCCCACCCGAATTTCCTC  1000

seq1  AGCCCCTCAA-TATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAGGTAAG  1045
      |||||||||| |||||||||||||||||||||||||| |  |||||||||
seq2  AGCCCCTCAATTATGCTTGAGCACTTGGCTTCCAAGAAGGCGAAGGTAAG  1050

seq1  GGGGTCCTGTAGCTGT-GTTTGGTCTTCTTGCATAGGGTTGAGGCATGGT  1094
      |||||||||||||||| |||||||| ||||||||||| |||| ||||| |
seq2  GGGGTCCTGTAGCTGTGGTTTGGTC-TCTTGCATAGGTTTGA-GCATGAT  1098

seq1  AGTCTCC-ACCATTTCTCCTTCTGTTCTTTGTTCCCAG-CTGGTG  1137
      ||||||| ||||||  ||| |||||||  || |||||| ||||||
seq2  AGTCTCCAACCATT--TCCCTCTGTTC--TGGTCCCAGCCTGGTG  1139