BAC Information

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BAC

Clone NameB6Ng01-333A23
Chromosome10 (Build37)19 (Build37)
Map Location 17,423,546 - 17,424,28856,037,861 - 56,038,542
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333A23.bB6Ng01-333A23.g
ACCGA118980GA118981
length1,121831
definitionB6Ng01-333A23.b B6Ng01-333A23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,423,546 - 17,424,288)(56,037,861 - 56,038,542)
sequence
gaattctcctttcagaagctccgctcttacagcaagcttctctgtctaga
gctgggatggcttgcctcctctccctgctgtgatttaccacaggtctgaa
gacaatagacacgaagcttcccacactgtttggagtgcagtgtctggagt
aggcctttgcatagtgctctttaagcctgcttcctggtcttgggagttgt
cctctgtgtaaaacttaagatattatgagggaggaggtattcaagggaag
tgggggctgggggcggggtgtcttagattctctagatgtacttcctgata
gctggaagttgttgggtcagccatggatgtatgggtgggtagatggatgg
aaaaggggattgtgagacaagaaggcttagggctaataaaactgacacat
ataatatatatggtaggtatcatacatatatcatatatctcattcatatg
agaaatctgttagttagctaattaaggcagaaactccccatatttatacc
atgagtattcgtcttaattaagagatgtttccccatgatttggaccttca
agaaacttcctcaaaaaagcagcatttaagtaatagatcatttttttcct
tactgctctgcccatcacccacagtccttcctgccattcagagtctcttg
accattaagaaaggatctttgttgctgcaccatgctgatataatttgagc
cagaagcaaagaaactttgacattttatttagcccatagggactcatctc
aagaaaaaagtattggttttctgctagccttttggaaatattgaaaatag
ctcaagggagtccattactgtcttcaatgaccctaaggaaaggtgggatt
ttttacacaggggaattttcccattagagaatacacaagacttgaaatta
gagaaaaacatcacattttccctcatttttatgcatttattccacttgat
aattctgttggagcaacaaactaagttatatagtaaggcactaaaggaac
atattgtgaacaggaaaaaataatattactttgtcaccagaaaactttac
attcttaagccagattgagtgtgcttcagaaaagctcaagttcagtgtta
ctctctaatagaagtttgatc
gaattctagatacaggtttttttgatgtagtggtatttgggaaaacatga
aatgctgccatattgggacataaggagatggaaaggggggaaataaaagg
acactaagatcatagagcacggaagcctgcacgcacgtacactccaggaa
gaccataccttcctgaagatctcagccaatgaagaatacagggatccgat
tagaaagacacagccactgcttgcaccaaataggcacagcttcctccttt
gctttatgtccaagcagatccccacgttctacagaacctaaaataaatct
gccttgacttcactgctgctttgattatccaggacccttactatgacgtg
gggatggttgtgtctgagaaggagccctaaagtctctctggcttcctcgg
gccctaacacacatgtgcacttatactcacacatagagaggaaacacata
cacacataatttaaagaaaatcagagaaaaagatgtttggaaactgtctc
tgataatggctttgagagtttataacctcccccccctaattaaataaaat
atgttttaataaataaaataagaccgaattctagtcaggcattgtgaaac
atgccttgaatctcactacttaggaggcagaactatgcagatgttgatct
ctgtgatttttaaggctgcatggttctacagagagcttcagactagccag
gactacagaataagaccaagtctctgaagaatataattttgaaaattatc
aatagatccaaaataaagtcagaaagaaggactagaggaacaaaaaccag
atgagataaactgaaaataaatagaaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17423546_17424288
seq2: B6Ng01-333A23.b_388_1159

seq1  GAAAAGGGGATTGTGAGACAAGAAGGCTTAGGGCTAATAAAACTGACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGGATTGTGAGACAAGAAGGCTTAGGGCTAATAAAACTGACACA  50

seq1  TATAATATATATGGTAGGTATCATACATATATCATATATCTCATTCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATATATGGTAGGTATCATACATATATCATATATCTCATTCATAT  100

seq1  GAGAAATCTGTTAGTTAGCTAATTAAGGCAGAAACTCCCCATATTTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCTGTTAGTTAGCTAATTAAGGCAGAAACTCCCCATATTTATAC  150

seq1  CATGAGTATTCGTCTTAATTAAGAGATGTTTCCCCATGATTTGGACCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTATTCGTCTTAATTAAGAGATGTTTCCCCATGATTTGGACCTTC  200

seq1  AAGAAACTTCCTCAAAAAAGCAGCATTTAAGTAATAGATCATTTTTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTTCCTCAAAAAAGCAGCATTTAAGTAATAGATCATTTTTTTCC  250

seq1  TTACTGCTCTGCCCATCACCCACAGTCCTTCCTGCCATTCAGAGTCTC-T  299
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTACTGCTCTGCCCATCACCCACAGTCCTTCCTGCCATTCAGAGTCTCTT  300

seq1  GACCATTAAGAAAGGATCTTTGTTGCTGCACCATGCTGATATAATTTGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTAAGAAAGGATCTTTGTTGCTGCACCATGCTGATATAATTTGAG  350

seq1  CCAGAAGCAAAGAAAC-TTGACATTTTATTTAGCCCATAGGGACTCATCT  398
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAGAAGCAAAGAAACTTTGACATTTTATTTAGCCCATAGGGACTCATCT  400

seq1  CAAGAAAAAAGTATTGG-TTTCTGCTAGCCTTTTGGAAATATTGAAAATA  447
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAAGAAAAAAGTATTGGTTTTCTGCTAGCCTTTTGGAAATATTGAAAATA  450

seq1  GCTCAA-GGAGTCCATTACTGTCTTCAATGACCCTAAGG-AAGGTGGGA-  494
      |||||| |||||||||||||||||||||||||||||||| ||||||||| 
seq2  GCTCAAGGGAGTCCATTACTGTCTTCAATGACCCTAAGGAAAGGTGGGAT  500

seq1  TTTTTACACA-GGGAATTTTCCCATTAGAGAATACACAAGACT--GAATT  541
      |||||||||| ||||||||||||||||||||||||||||||||   ||||
seq2  TTTTTACACAGGGGAATTTTCCCATTAGAGAATACACAAGACTTGAAATT  550

seq1  AGAGAAAAACATCACA-TTTCCCTCATTTTTATGCATTTATTCCACTTGA  590
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAGAAAAACATCACATTTTCCCTCATTTTTATGCATTTATTCCACTTGA  600

seq1  TAATTCTTGTTGAGC-ACCAACT-AGTTATATAGT-AGGCACTAAA-GTA  636
      |||||||  | |||| || |||| ||||||||||| |||||||||| | |
seq2  TAATTCTGTTGGAGCAACAAACTAAGTTATATAGTAAGGCACTAAAGGAA  650

seq1  CATATTG-GGACA-GAAAAAAT-ATATTACTTTGTCCACAGAAA--CTTA  681
      ||||||| | ||| |||||||| |||||||||||||  ||||||   |||
seq2  CATATTGTGAACAGGAAAAAATAATATTACTTTGTCACCAGAAAACTTTA  700

seq1  CATCCT--AGCCAGATAGA---TGCGTAAGAAAAGCCCA--GTCAGTGT-  723
      ||| ||  |||||||| ||   ||| | |||||||| ||   ||||||| 
seq2  CATTCTTAAGCCAGATTGAGTGTGCTTCAGAAAAGCTCAAGTTCAGTGTT  750

seq1  --ACTCTAATAGAGGTTTGATC  743
         |||||||||| ||||||||
seq2  ACTCTCTAATAGAAGTTTGATC  772

seq1: chr19_56037861_56038542
seq2: B6Ng01-333A23.g_63_744 (reverse)

seq1  TCTGTAGAACCATGCAGCCTTAAAAATCACAGAGATCAACATCTGCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGAACCATGCAGCCTTAAAAATCACAGAGATCAACATCTGCATAG  50

seq1  TTCTGCCTCCTAAGTAGTGAGATTCAAGGCATGTTTCACAATGCCTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTCCTAAGTAGTGAGATTCAAGGCATGTTTCACAATGCCTGACT  100

seq1  AGAATTCGGTCTTATTTTATTTATTAAAACATATTTTATTTAATTAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCGGTCTTATTTTATTTATTAAAACATATTTTATTTAATTAGGGG  150

seq1  GGGGAGGTTATAAACTCTCAAAGCCATTATCAGAGACAGTTTCCAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTTATAAACTCTCAAAGCCATTATCAGAGACAGTTTCCAAACAT  200

seq1  CTTTTTCTCTGATTTTCTTTAAATTATGTGTGTATGTGTTTCCTCTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTCTGATTTTCTTTAAATTATGTGTGTATGTGTTTCCTCTCTAT  250

seq1  GTGTGAGTATAAGTGCACATGTGTGTTAGGGCCCGAGGAAGCCAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTATAAGTGCACATGTGTGTTAGGGCCCGAGGAAGCCAGAGAGA  300

seq1  CTTTAGGGCTCCTTCTCAGACACAACCATCCCCACGTCATAGTAAGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGGCTCCTTCTCAGACACAACCATCCCCACGTCATAGTAAGGGTC  350

seq1  CTGGATAATCAAAGCAGCAGTGAAGTCAAGGCAGATTTATTTTAGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAATCAAAGCAGCAGTGAAGTCAAGGCAGATTTATTTTAGGTTCT  400

seq1  GTAGAACGTGGGGATCTGCTTGGACATAAAGCAAAGGAGGAAGCTGTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACGTGGGGATCTGCTTGGACATAAAGCAAAGGAGGAAGCTGTGCC  450

seq1  TATTTGGTGCAAGCAGTGGCTGTGTCTTTCTAATCGGATCCCTGTATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGTGCAAGCAGTGGCTGTGTCTTTCTAATCGGATCCCTGTATTCT  500

seq1  TCATTGGCTGAGATCTTCAGGAAGGTATGGTCTTCCTGGAGTGTACGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCTGAGATCTTCAGGAAGGTATGGTCTTCCTGGAGTGTACGTGC  550

seq1  GTGCAGGCTTCCGTGCTCTATGATCTTAGTGTCCTTTTATTTCCCCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGCTTCCGTGCTCTATGATCTTAGTGTCCTTTTATTTCCCCCCTT  600

seq1  TCCATCTCCTTATGTCCCAATATGGCAGCATTTCATGTTTTCCCAAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCCTTATGTCCCAATATGGCAGCATTTCATGTTTTCCCAAATAC  650

seq1  CACTACATCAAAAAAACCTGTATCTAGAATTC  682
      ||||||||||||||||||||||||||||||||
seq2  CACTACATCAAAAAAACCTGTATCTAGAATTC  682