BAC Information

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BAC

Clone NameB6Ng01-333D19
Chromosome19 (Build37)
Map Location 44,498,904 - 44,499,943
singlet/doubletsinglet
Overlap genenone
Upstream geneCnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1
Downstream geneWnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333D19.bB6Ng01-333D19.g
ACCGA119106GA119107
length1,2611,058
definitionB6Ng01-333D19.b B6Ng01-333D19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttacaagctgagaaagactattggctaatagccaacaaaaata
tgggaagtgtagccctataaattcaagtaattgaatttgaccaataactg
ctatgcttataaaaggattcagagcctcagatgtcatggcataggccttg
gtttcacactggtgagaccctgagctgtggacctgactaaccagaaccaa
tactcatgacaaatgtgagatattaagtaggtgttgtttgggctgctaat
tttatgacttgtttaaagaacactaaaacaaaatttaactgaatatgcag
caatagaaattaatacttctgtcttagttatatacttaagctacatagtc
actatgatataacaagttgataacagggttatctccatgaaggggtttgg
cagcagtcaagattttatctgcaatgttgatttttttttttaatttatag
ccttgaaaattaaaaataaaccagacctagaaattcatattattaaaatc
aggaatgaatgcaggaacataacactgactttacaaatataaaaagcaat
atataagatactatcagcaagtgaacattaaaaatagagactctagatga
aatcgaggaattcctgtaaaaaacaccaactataataactaattcaagaa
aaatctaattggacccatatcaaaactacattagggattttttattaatc
ccataaagaaaagcccaaaacaatgtggatcattgatgagtcctaccaaa
cacttagaacagaattactaacaatccttcagacacagaggaggagggaa
gacttccccattcatcctatgaggccagcattacccagatatcaagatga
gaaagcgagaaaatatcccttatgaacagacatacaaaagtccctagcga
aacaaatctagcaccatacaaaaaagtttacatactataactaaatggga
tttattttgggaatgcctacagcctggctgtcctggaacttgctctgtag
accaagctgtcaggtactcctgcttctgcctctgagcgctgtgataaggc
atgagccacactgcccagctttagaagtagtctttgacaagcttttgtaa
gaacctcctttcgggaccctcctcacctctaggtctcaggaggtgagaga
gacctcaaagaaaacatgagaattcaactgctgtatccatgaggcgatat
taatgtatggaggctcagactcgaacatgtgtccattctctcacacacag
ggagaggatta
gaattcactgaggaagaatcatcaccaagttcagtggaagcagccgagtt
ggtagaaaggtggttaacagaaggagtttctctcaaattcccaggtgacc
tagttttcccataattcagttaatgacactgccaccactttgtgctggca
gatgtaccttttgtaaagtgtgatgggcccccctctcctctctggtgagt
tttgcaattttctttaggggacaggaaggagatgattcagggcttagaga
ggtcctgagaagagggtttggggtccaattggtatggtgatgtcctgagg
gaaagcccattgcacacaggctttctgcgaggcattaactgggagcttta
gtgtccaacttcagagaaggtagtggaaagatcacagtgcaaaggtggag
tcaaagcttgtgcaagatgagagagtgggagcactcggaggctacctggc
ctgtaggtgagggaaccgatgctgtattcagttaatgccttctttaacgg
ttgcacagcgagtggtgtttgcctggtacagcacacagttctaccttcta
tgcgtgtcgactgtcttagtcagggtttctattcctgcacaaacatcatg
accaagaagcaagttggggaggaaatttgccttacacttccacattgctg
ttcatcaccaaaggaagtcaggactggaactcaagcaggtcaggaagcag
gagctgatgcagagccatggaggggtgttccttactgctttgcttcccct
ggcttgctcagcttgctttcttgtagaacccaggactaccagcccaggga
tggcaccacccacaatgggccctccctgcttgatcactaattgagaaaat
gccttacagctggatcttcatggaggcatttcctcaagggaggcttcttt
ctctgtgataacatctagcttcgtgttaatatgacgaccaaacaccaacc
agccagcgacaaccaacaaggtgggtcggccctgccttctctttctcatc
gatctatcgaatgaaagagacatcgttggctacagcaaattctttatgaa
agaatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44498904_44499943
seq2: B6Ng01-333D19.g_67_1124

seq1  GAATTCACTGAGGAAGAATCATCACCAAGTTCAGTGGAAGCAGCCGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGGAAGAATCATCACCAAGTTCAGTGGAAGCAGCCGAGTT  50

seq1  GGTAGAAAGGTGGTTAACAGAAGGAGTTTCTCTCAAATTCCCAGGTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAAGGTGGTTAACAGAAGGAGTTTCTCTCAAATTCCCAGGTGACC  100

seq1  TAGTTTTCCCATAATTCAGTTAATGACACTGCCACCACTTTGTGCTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCCCATAATTCAGTTAATGACACTGCCACCACTTTGTGCTGGCA  150

seq1  GATGTACCTTTTGTAAAGTGTGATGGGCCCCCCTCTCCTCTCTGGTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACCTTTTGTAAAGTGTGATGGGCCCCCCTCTCCTCTCTGGTGAGT  200

seq1  TTTGCAATTTTCTTTAGGGGACAGGAAGGAGATGATTCAGGGCTTAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATTTTCTTTAGGGGACAGGAAGGAGATGATTCAGGGCTTAGAGA  250

seq1  GGTCCTGAGAAGAGGGTTTGGGGTCCAATTGGTATGGTGATGTCCTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGAAGAGGGTTTGGGGTCCAATTGGTATGGTGATGTCCTGAGG  300

seq1  GAAAGCCCATTGCACACAGGCTTTCTGCGAGGCATTAACTGGGAGCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCCATTGCACACAGGCTTTCTGCGAGGCATTAACTGGGAGCTTTA  350

seq1  GTGTCCAACTTCAGAGAAGGTAGTGGAAAGATCACAGTGCAAAGGTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAACTTCAGAGAAGGTAGTGGAAAGATCACAGTGCAAAGGTGGAG  400

seq1  TCAAAGCTTGTGCAAGATGAGAGAGTGGGAGCACTCGGAGGCTACCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTTGTGCAAGATGAGAGAGTGGGAGCACTCGGAGGCTACCTGGC  450

seq1  CTGTAGGTGAGGGAACCGATGCTGTATTCAGTTAATGCCTTCTTTAACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTGAGGGAACCGATGCTGTATTCAGTTAATGCCTTCTTTAACGG  500

seq1  TTGCACAGCGAGTGGTGTTTGCCTGGTACAGCACACAGTTCTACCTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGCGAGTGGTGTTTGCCTGGTACAGCACACAGTTCTACCTTCTA  550

seq1  TGCGTGTCGACTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTCGACTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATG  600

seq1  ACCAAGAAGCAAGTTGGGGAGGAAATTTGCCTTACACTTCCACATTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAAGCAAGTTGGGGAGGAAATTTGCCTTACACTTCCACATTGCTG  650

seq1  TTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAG  700

seq1  GAGCTGATGCAGAGCCATGGAGGGGTGTTCCTTACTGCTTTGCTTCCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATGCAGAGCCATGGAGGGGTGTTCCTTACTGCTTTGCTTCCCCT  750

seq1  GGCTTGCTCAGCTTGCTTTCTTGTAGAACCCAGGACTACCAGCCCAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTCAGCTTGCTTTCTTGTAGAACCCAGGACTACCAGCCCAGGGA  800

seq1  TGGCACCACCCACAATGGGCCCTCCCTGCTTGATCACTAATTGAGAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCACCCACAATGGGCCCTCCCTGCTTGATCACTAATTGAGAAAAT  850

seq1  GCCTTACAGCTGGATC-TCATGGAGGCATTTCCTCAAGGGAGGCTCCTTT  899
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  GCCTTACAGCTGGATCTTCATGGAGGCATTTCCTCAAGGGAGGCTTCTTT  900

seq1  CTCTGTGATAAC-TCCAGCTT-GTGTTAAGTTGACACACAA-----AACC  942
      |||||||||||| || ||||| |||||||  ||||   |||     ||||
seq2  CTCTGTGATAACATCTAGCTTCGTGTTAATATGACGACCAAACACCAACC  950

seq1  AGCCAG-TACAGCCACCAAAGTGG--TGG----GCCTGCACTTTGTCACA  985
      ||||||  ||| ||| ||| ||||   ||    |||| | |||| |||  
seq2  AGCCAGCGACAACCAACAAGGTGGGTCGGCCCTGCCTTCTCTTTCTCATC  1000

seq1  GTTCTATCGCATG-AAGAGACA-CCATGGCTACAGCAAAATC-TTATGAA  1032
      | ||||||| ||| |||||||| |  ||||||||||||| || |||||||
seq2  GATCTATCGAATGAAAGAGACATCGTTGGCTACAGCAAATTCTTTATGAA  1050

seq1  AGAAAGCA  1040
      |||| |||
seq2  AGAATGCA  1058