BAC Information

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BAC

Clone NameB6Ng01-334L07
Chromosome19 (Build37)7 (Build37)
Map Location 19,795,011 - 19,795,45575,521,296 - 75,521,603
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334L07.bB6Ng01-334L07.g
ACCGA120145GA120146
length439929
definitionB6Ng01-334L07.b B6Ng01-334L07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,795,011 - 19,795,455)(75,521,296 - 75,521,603)
sequence
taactttctgacactttgtaaatctacttcaagatgaactcatcaacata
atccagccgtttaatagggatgatttatatggaaggaaagacatgttgct
tctagagccattaggaaaggggaaagatcagaagatatacagagcatgct
gaaatcttctcaaatcagaaatgatggcagaaagggctccgagataggga
gtatttgcttagaaagttctgtaattttttttcttctacttttctttttt
ttttaaattttctatactatctaaaattctacattatttctttaaaaata
aatataatataaccaagatgattctcttcttgtaatcttagcccagtcat
cagaggtcaatcttaggaagctagcaattgtggaggtttttgtgtttatt
tgtttgttttgttttgtttgtgttttggtggtagtgggg

gaattctttatatattttggatattaatccactatcaggcagggacttgc
taaaaatgtgttctccttgtgtaggctgctgcactgcccaaatgacagtg
acttctgtcttacagaatcttttcagtttcattaattctcatttgttaat
tgttgatcttagtgcctgcactgacaatgttctatgcagaaatgacttca
aggttattgaccactttctcttatatcatgtgtagcaggaacagcagggc
cacctctatgtaaatgctggaagccacgcagctgccaaagcatctcctgc
aggagcaaataaagccagacaaacaagaacttctgtttagaagagatgct
ttcttgggaccaatgggggcatgggtggagggtattaaagggatttgcag
cagtgcttggttgagcttgttgtagttcccacctgctcccagagtctgtg
tagttgactctgctccaacttgcccccaaccaacaagggcaggtagggtt
gggagaaaagctgtccattgcatgggtaacaatcatgttcagaacatctg
gtttgatgatgaggtctttgaaataccaggagtttagttttgtgcagaaa
gataaatatgtattttccttcttctacatgcagataaccattttgagcag
aaccatttgttgaagatgcgttctttctttccatgtgtatttctggcttc
tatgtaaaaacccagatgtccatagttgtgtggatttatatctgtgtctt
cacttcaattgcatcgatcaatatgcctgtttttatgccaataccatgtg
gttgttattactaaagctttgtagtacaacttaaaatagaaaatagtaag
acatttcacagttcttctattgttcaagattgttttagctatccttgtta
ttttatgtttttgttcattttttcatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19795011_19795455
seq2: B6Ng01-334L07.b_48_492

seq1  GAATTCTAACTTTCTGACACTTTGTAAATCTACTTCAAGATGAACTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTTTCTGACACTTTGTAAATCTACTTCAAGATGAACTCATC  50

seq1  AACATAATCCAGCCGTTTAATAGGGATGATTTATATGGAAGGAAAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAATCCAGCCGTTTAATAGGGATGATTTATATGGAAGGAAAGACAT  100

seq1  GTTGCTTCTAGAGCCATTAGGAAAGGGGAAAGATCAGAAGATATACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCTAGAGCCATTAGGAAAGGGGAAAGATCAGAAGATATACAGAG  150

seq1  CATGCTGAAATCTTCTCAAATCAGAAATGATGGCAGAAAGGGCTCCGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGAAATCTTCTCAAATCAGAAATGATGGCAGAAAGGGCTCCGAGA  200

seq1  TAGGGAGTATTTGCTTAGAAAGTTCTGTAATTTTTTTTCTTCTACTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTATTTGCTTAGAAAGTTCTGTAATTTTTTTTCTTCTACTTTTC  250

seq1  TTTTTTTTTTAAATTTTCTATACTATCTAAAATTCTACATTATTTCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAATTTTCTATACTATCTAAAATTCTACATTATTTCTTTA  300

seq1  AAAATAAATATAATATAACCAAGATGATTCTCTTCTTGTAATCTTAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATATAATATAACCAAGATGATTCTCTTCTTGTAATCTTAGCCC  350

seq1  AGTCATCAGAGGTCAATCTTAGGAAGCTAGCAATTGTGGAGGTTTTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCAGAGGTCAATCTTAGGAAGCTAGCAATTGTGGAGGTTTTTGTG  400

seq1  TTTATTTGTTTGTTTTGTTTTGTTTGTGTTTTGGTGGTAGTGGGG  445
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTTTGTTTTGTTTTGTTTGTGTTTTGGTGGTAGTGGGG  445


seq1: chr7_75521296_75521603
seq2: B6Ng01-334L07.g_296_564

seq1  TGTAGCAGGAACAGAGGGGCCACCTCTATGTAAAATCCGGGGGGCGGGGC  50
      ||||||||||||||  ||||||||||||||| |||| | ||  ||    |
seq2  TGTAGCAGGAACAGCAGGGCCACCTCTATGT-AAATGCTGGAAGC----C  45

seq1  GCACAGCCGCAAAAGCATCTCCTGCAGGAGGACCTAATGGAGGACTGCCT  100
       | |||| || ||||||||||||||||||                     
seq2  ACGCAGCTGCCAAAGCATCTCCTGCAGGA---------------------  74

seq1  GAGAGACCAAGGATTGCGGATGCAGACAATGCCAGCCAATCAGGAACTGC  150
                           ||| | || ||||| ||| || ||||| |
seq2  ---------------------GCAAATAAAGCCAGACAAACAAGAACTTC  103

seq1  TGTTTAGAAGAGATGCTTTCTTGGGACCAATGGGGACCAATGGGGCACGG  200
      ||||||||||||||||||||||||||||||||         |||||| ||
seq2  TGTTTAGAAGAGATGCTTTCTTGGGACCAATG---------GGGGCATGG  144

seq1  GTGGAGGGTATTAAAGGAGCTGGAAGCAGT--TTGCT---GC-TGCACTG  244
      |||||||||||||||||   | | ||||||  ||| |   || ||   | 
seq2  GTGGAGGGTATTAAAGGGATTTGCAGCAGTGCTTGGTTGAGCTTGTTGTA  194

seq1  TTTCTCACCTGCTTCTGAAGTCTGTAT-CATGAC----------CTCACC  283
       ||| |||||||| |   ||||||| |   ||||          ||  ||
seq2  GTTCCCACCTGCTCCCAGAGTCTGTGTAGTTGACTCTGCTCCAACTTGCC  244

seq1  TCCAACCCCCAAGGGCAGGTAGGGT  308
       ||||||  ||||||||||||||||
seq2  CCCAACCAACAAGGGCAGGTAGGGT  269


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