BAC Information

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BAC

Clone NameB6Ng01-335E12
Chromosome19 (Build37)
Map Location 5,448,505 - 5,527,829
singlet/doubletdoublet
Overlap geneFosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik
Upstream geneSyt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425
Downstream geneOvol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335E12.bB6Ng01-335E12.g
ACCGA120562GA120563
length1,0781,136
definitionB6Ng01-335E12.b B6Ng01-335E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,526,754 - 5,527,829)(5,448,505 - 5,449,665)
sequence
gaattcagtctttggttcctgacaaccacagtggaaaggaagaactgact
cctaaagtcggcatctgacttccacatgagcactacaacacacacaggct
gtggcacacataatgtccgctcacgtccacatgtgtaaacatacacacta
gtaatacattttaatatggggcggggaggcatcttcgcagctgagcacct
ggacagcatgtgtgatgccttaggttcactctcagaacaagcaacaaacg
caagcaggagggcctttcattttgaacgagagtctgaaacacattctgaa
cccacgaggtgctggtttcacaacatagcaaatgcagtaaacgccactag
actgcaactttacaatctaattatagttatatgaatcccaactcaataat
gaaaaatgaaaggacatgattgtaacgtaataattatgatcattgatcgg
taaacagtacaaatcctgagtaagttggcacgcagagcacgactctcatg
cgccttgtggtttacacacatggtttactgaagagatcccctccagcaag
ccacaagtgcacacgggaatagatgacaccatagataatcccagtgggcc
tggacacacatcctgtcaaaagctctgtgcccactgcccctacttctttc
tcagtctgctctatatcaattcatcaaaaagatcttcctggactagagag
acggttcagcggttaagagcactgactgctcttccagaggtcctgagttc
aattcccagcaaccacatggaggctcacaaccatctgtaatagatctgac
gtcctcttctggtgtgtctgaagtcagtgacagtgtattcatataaataa
aattaataataataaccctacctaagaacaatcttcttcctgttgtcacc
ctgcctttaggctgcttgattcctttgttttgtttgtttgttttaatgcc
ttgggttgggttggtttaaggcatagtctctttatgtagccttggcttgt
cttattttctgcttaacttgtagaaccagcctgggcctcaaactccacca
gcatttgcctgcgtctgcctcctagtgc
gaattcttagcagcctgtccgaggctgtccgtgtgttgctctggttgtcc
gtgtccctttatccggtcaagtcctcatctctttgtgcgcagtatagagc
ccatgggccccaggcagtggttccgaggggttcctggagaccacgaagtg
ttgggatgtgcgcggggtcacctgcccggccacactcgcgctccacattc
tcggcacccgacgtctctcactgctggataggggcacttgagaggttgca
ggtgtccatttcctgtcgaggggccgcgagcacgtgtcgccaggggaggg
aaggagctgcgtccgtttcgccgagtcacagcgggccgagtcactgaggc
tgagtcaccctgggtgcccctcccttcctggccccaaacggcccctaagg
accgacgacctgggagcgagagatgcccctggcagtgcttctagcccaga
acgggggtcactgagatgctgggtcccccagtattgggctggggacatag
ctgtccagacttgcctaagcatgtgaggtgcttcctggactggaggggcc
ccacatccttagctcacagagcttgaacccagttttctctcccagaacgc
tgagcccccacccccaccgacactcaatcccaacacatgcctcagatttc
tgcaagaaaaggaaggaaaggatgccagaccccttataggaggcttttac
tctcttcactttatttcatggacttaaaaaaccccatcaattttgaactt
tcaagtttttaagtcgacagctaggcatgcatttaatcccagcattcagg
aggcagaggcaggcagatctctgggagtttgaagccaatttggtctacaa
agtgacttccaggtcagctagagctacataatagagatcctgtctcaaaa
cttaaaaaataaaaacaaaaccaaagccgattaaactctgatttctgagc
tttgagagctggcttctcaacagcaatgaacgtgaatgatgttaatacca
ggaaactgagactaatacatgctcagtctcaaagcccatcattgccagct
ccagctgatgctgactccagctctgtgctacatgttctatagtcttgttg
ctgaggtaaggcaggatctgggatagtctagcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5526754_5527829
seq2: B6Ng01-335E12.b_50_1127 (reverse)

seq1  GCACTTAGGAGGCAGACGCAGGCAAATGCTTGT-GAGTTTGAGG-CCAGG  48
      |||| ||||||||||||||||||||||||| || |||||||||| |||||
seq2  GCAC-TAGGAGGCAGACGCAGGCAAATGCTGGTGGAGTTTGAGGCCCAGG  49

seq1  CTGG-TCTACAAGTTAAGCAG-AAATAGGAC-AGCCAAGGCTACATAAAG  95
      |||| |||||||||||||||| ||||| ||| ||||||||||||||||||
seq2  CTGGTTCTACAAGTTAAGCAGAAAATAAGACAAGCCAAGGCTACATAAAG  99

seq1  AGACTATGCCTTAAAACCAAACCAAACCAAAGCAATTAAAAACAAAACAA  145
      |||||||||||| ||||||| |||| |||| |||  | ||||||||   |
seq2  AGACTATGCCTT-AAACCAACCCAACCCAAGGCA--TTAAAACAAA--CA  144

seq1  AACAAAACAAA-GAATCAAGCAGCCTAAAGGCA-GGTGACAACAGGAAGA  193
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  AACAAAACAAAGGAATCAAGCAGCCTAAAGGCAGGGTGACAACAGGAAGA  194

seq1  AGATTGTTCTTAGGTA-GGTTATTATTATTAATTTTATTTATATGAATAC  242
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGATTGTTCTTAGGTAGGGTTATTATTATTAATTTTATTTATATGAATAC  244

seq1  ACTGTCACTGACTTCAGACACACCAGAAGAGGACGTCAGATCTATTACAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCACTGACTTCAGACACACCAGAAGAGGACGTCAGATCTATTACAG  294

seq1  ATGGTTGTGAGCCTCCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAGCCTCCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTG  344

seq1  GAAGAGCAGTCAGTGCTCTTAACCGCTGAACCGTCTCTCTAGTCCAGGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGTCAGTGCTCTTAACCGCTGAACCGTCTCTCTAGTCCAGGAA  394

seq1  GATCTTTTTGATGAATTGATATAGAGCAGACTGAGAAAGAAGTAGGGGCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTTGATGAATTGATATAGAGCAGACTGAGAAAGAAGTAGGGGCA  444

seq1  GTGGGCACAGAGCTTTTGACAGGATGTGTGTCCAGGCCCACTGGGATTAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCACAGAGCTTTTGACAGGATGTGTGTCCAGGCCCACTGGGATTAT  494

seq1  CTATGGTGTCATCTATTCCCGTGTGCACTTGTGGCTTGCTGGAGGGGATC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTGTCATCTATTCCCGTGTGCACTTGTGGCTTGCTGGAGGGGATC  544

seq1  TCTTCAGTAAACCATGTGTGTAAACCACAAGGCGCATGAGAGTCGTGCTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTAAACCATGTGTGTAAACCACAAGGCGCATGAGAGTCGTGCTC  594

seq1  TGCGTGCCAACTTACTCAGGATTTGTACTGTTTACCGATCAATGATCATA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGCCAACTTACTCAGGATTTGTACTGTTTACCGATCAATGATCATA  644

seq1  ATTATTACGTTACAATCATGTCCTTTCATTTTTCATTATTGAGTTGGGAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACGTTACAATCATGTCCTTTCATTTTTCATTATTGAGTTGGGAT  694

seq1  TCATATAACTATAATTAGATTGTAAAGTTGCAGTCTAGTGGCGTTTACTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAACTATAATTAGATTGTAAAGTTGCAGTCTAGTGGCGTTTACTG  744

seq1  CATTTGCTATGTTGTGAAACCAGCACCTCGTGGGTTCAGAATGTGTTTCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTATGTTGTGAAACCAGCACCTCGTGGGTTCAGAATGTGTTTCA  794

seq1  GACTCTCGTTCAAAATGAAAGGCCCTCCTGCTTGCGTTTGTTGCTTGTTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCGTTCAAAATGAAAGGCCCTCCTGCTTGCGTTTGTTGCTTGTTC  844

seq1  TGAGAGTGAACCTAAGGCATCACACATGCTGTCCAGGTGCTCAGCTGCGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGAACCTAAGGCATCACACATGCTGTCCAGGTGCTCAGCTGCGA  894

seq1  AGATGCCTCCCCGCCCCATATTAAAATGTATTACTAGTGTGTATGTTTAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTCCCCGCCCCATATTAAAATGTATTACTAGTGTGTATGTTTAC  944

seq1  ACATGTGGACGTGAGCGGACATTATGTGTGCCACAGCCTGTGTGTGTTGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGACGTGAGCGGACATTATGTGTGCCACAGCCTGTGTGTGTTGT  994

seq1  AGTGCTCATGTGGAAGTCAGATGCCGACTTTAGGAGTCAGTTCTTCCTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCATGTGGAAGTCAGATGCCGACTTTAGGAGTCAGTTCTTCCTTT  1044

seq1  CCACTGTGGTTGTCAGGAACCAAAGACTGAATTC  1076
      ||||||||||||||||||||||||||||||||||
seq2  CCACTGTGGTTGTCAGGAACCAAAGACTGAATTC  1078

seq1: chr19_5448505_5449665
seq2: B6Ng01-335E12.g_67_1202

seq1  GAATTCTTAGCAGCCTGTCCGAGGCTGTCCGTGTGTTGCTCTGGTTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCAGCCTGTCCGAGGCTGTCCGTGTGTTGCTCTGGTTGTCC  50

seq1  GTGTCCCTTTATCCGGTCAAGTCCTCATCTCTTTGTGCGCAGTATAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTTTATCCGGTCAAGTCCTCATCTCTTTGTGCGCAGTATAGAGC  100

seq1  CCATGGGCCCCAGGCAGTGGTTCCGAGGGGTTCCTGGAGACCACGAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGCCCCAGGCAGTGGTTCCGAGGGGTTCCTGGAGACCACGAAGTG  150

seq1  TTGGGATGTGCGCGGGGTCACCTGCCCGGCCACACTCGCGCTCCACATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATGTGCGCGGGGTCACCTGCCCGGCCACACTCGCGCTCCACATTC  200

seq1  TCGGCACCCGACGTCTCTCACTGCTGGATAGGGGCACTTGAGAGGTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCACCCGACGTCTCTCACTGCTGGATAGGGGCACTTGAGAGGTTGCA  250

seq1  GGTGTCCATTTCCTGTCGAGGGGCCGCGAGCACGTGTCGCCAGGGGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCATTTCCTGTCGAGGGGCCGCGAGCACGTGTCGCCAGGGGAGGG  300

seq1  AAGGAGCTGCGTCCGTTTCGCCGAGTCACAGCGGGCCGAGTCACTGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTGCGTCCGTTTCGCCGAGTCACAGCGGGCCGAGTCACTGAGGC  350

seq1  TGAGTCACCCTGGGTGCCCCTCCCTTCCTGGCCCCAAACGGCCCCTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACCCTGGGTGCCCCTCCCTTCCTGGCCCCAAACGGCCCCTAAGG  400

seq1  ACCGACGACCTGGGAGCGAGAGATGCCCCTGGCAGTGCTTCTAGCCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACGACCTGGGAGCGAGAGATGCCCCTGGCAGTGCTTCTAGCCCAGA  450

seq1  ACGGGGGTCACTGAGATGCTGGGTCCCCCAGTATTGGGCTGGGGACATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGGTCACTGAGATGCTGGGTCCCCCAGTATTGGGCTGGGGACATAG  500

seq1  CTGTCCAGACTTGCCTAAGCATGTGAGGTGCTTCCTGGACTGGAGGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGACTTGCCTAAGCATGTGAGGTGCTTCCTGGACTGGAGGGGCC  550

seq1  CCACATCCTTAGCTCACAGAGCTTGAACCCAGTTTTCTCTCCCAGAACGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCTTAGCTCACAGAGCTTGAACCCAGTTTTCTCTCCCAGAACGC  600

seq1  TGAGCCCCCACCCCCACCGACACTCAATCCCAACACATGCCTCAGATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCCACCCCCACCGACACTCAATCCCAACACATGCCTCAGATTTC  650

seq1  TGCAAGAAAAGGAAGGAAAGGATGCCAGACCCCTTATAGGAGGCTTTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAAAAGGAAGGAAAGGATGCCAGACCCCTTATAGGAGGCTTTTAC  700

seq1  TCTCTTCACTTTATTTCATGGACTTAAAAAACCCCATCAATTTTGAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCACTTTATTTCATGGACTTAAAAAACCCCATCAATTTTGAACTT  750

seq1  TCAAGTTTTTAAGTCGACAGCTAGGCATGCATTTAATCCCAGCATTCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTTTAAGTCGACAGCTAGGCATGCATTTAATCCCAGCATTCAGG  800

seq1  AGGCAGAGGCAGGCAGATCTCTGGGAGTTTGAAGCCAATTTGGTCTACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGCAGATCTCTGGGAGTTTGAAGCCAATTTGGTCTACAA  850

seq1  AGTGACTTCCAGGTCAGCTAGAGCTACATAATAGAGATCCTGTCTCAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTCCAGGTCAGCTAGAGCTACATAATAGAGATCCTGTCTCAAAA  900

seq1  CTTAAAAAATAAAAAACAAAAACAAAAGCCGATTAAAACTCTGATTTCTG  950
      |||||||||||||||   ||||| |||||||||| |||||||||||||||
seq2  CTTAAAAAATAAAAA--CAAAACCAAAGCCGATT-AAACTCTGATTTCTG  947

seq1  AGCTATGAGAGCTGGCTTCTCAACAGCAATGGAACGTTGAATGATGTTAA  1000
      |||| ||||||||||||||||||||||||| ||||| |||||||||||||
seq2  AGCTTTGAGAGCTGGCTTCTCAACAGCAAT-GAACG-TGAATGATGTTAA  995

seq1  TAACAGGGAAACTGAGACTAAATAACATGCCCCAGTCTCAAAGCCCATCA  1050
      || || |||||||||||||||   ||||| | ||||||||||||||||||
seq2  TACCA-GGAAACTGAGACTAA--TACATG-CTCAGTCTCAAAGCCCATCA  1041

seq1  ATGGCCAAGCTCCAAGCTGATGCTGGACTCCCAAGCTCTGGTGCTACATG  1100
       ||  | |||||| |||||||||| ||||||  |||||| ||||||||||
seq2  TTG--CCAGCTCC-AGCTGATGCT-GACTCC--AGCTCT-GTGCTACATG  1084

seq1  -TCTATAGTCTTGGTGCCTGGGAGGTAGAGGCAGAGGAATCGTGAGTTTA  1149
       |||||||||||| |||    |||||| |||||   | ||| || | |  
seq2  TTCTATAGTCTTGTTGC---TGAGGTA-AGGCA---GGATC-TGGGAT--  1124

seq1  GGTCTAGCCTGA  1161
       |||||||||||
seq2  AGTCTAGCCTGA  1136