BAC Information

Click to search

BAC

Clone NameB6Ng01-335G12
Chromosome19 (Build37)
Map Location 4,691,420 - 4,832,400
singlet/doubletdoublet
Overlap geneGm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs
Upstream gene1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1
Downstream geneCcdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335G12.bB6Ng01-335G12.g
ACCGA120646GA120647
length1,1341,010
definitionB6Ng01-335G12.b B6Ng01-335G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,831,271 - 4,832,400)(4,691,420 - 4,692,434)
sequence
gaattcttttcctgtcttcagggagttcctgccacattagtggtctttgt
cttaagagagtagtacgtctgtactgttaattattcaattgcttgattga
gcaggaaggtcacagtggagcacagaggtaatgagcatgatggtagtctg
aaaacagagaaacagaagtcataggaagaggactgacaaaatccagccct
catggacatttccctgtggatccatttcctctaacaaagccccaccccct
tcaccacctcccagtaatggcagcatatctcgaatccatcaagggattag
tgcattgattgtgtcaaagccttcacggtttacacatccagaaatgtgct
ttacaaatctcccggtggtcgccagttcaatcaaattgatagttaagatt
agccatcacaagaacattgcttttgtgctcagagactttctgttccctgg
tgctcttgtgagacctctctcagagcagtgcatctcctgcctgtacttgg
agttaagccctaaaatgagttctcattctgaaagctagagaaaacacact
tccttcttagatcctcgcaggactccagagtttgttttaattttctatca
tttttgttcatttgtttgagatagtatctcaggtagcccagactggcctc
aaaatcattacataatgaaggatggccttgaagttttggtcttccttcct
ctatctctcaaatgttgagatgataggcaaaagtcacggtatcctgcttt
ctatctcgatgtcaatccacaacttccgggcataaaattagtggaatctt
ggtacaagctaggcatcccaatccagtagaattgtggtacaatttgaaca
ttgctatctgcaggcctgagatcaagtgttccaaactctgagatttctat
taagaggttttttttttttttttgtttttgtttttgtttttcgagacagg
gtttctctgtattagcccctgggctgtcctgaaactcactttacttagac
caggctttgccttgaactcagaaaatccgcctgccttctgcctccgagtg
ctggatcaaagcgtgcgccaccacacctggcttagagtttaattttcaat
tagagtactcaatcagtaacggtatgccaatgtt
gaattcattaaacccacaatcatcaaaagttcctaaacggcagctggcaa
gactaatctgctcagtgggtcaatgagcttgccaccaagtgtgacagtct
gagtccagtctccagaatctccacagtagaaggaaagaaccaactgcaac
aagttattctctaatcacacacacacacacacacacacatacacaaacac
aaagttttaaaaacatactgatgttgtcatataatatagagaaaaatatt
actgtattactaacaggaaaaaacatttacagtacattacttatctaaat
tttataggaacaaatcctctttaatatctgggaaatgtctgcctgagttg
tacagagaatagtcagaaaatctacagttacctggacgtcatgcccattc
ctaagtctattccactttattgcttcagtggaatgtcagagaaaggagag
tatgaagtattattacatgagtgtctgggtctggagagatggctcggggg
ttaagaacatgtactgctctttcagaagagctgagttcagttctcagcac
ctctgttgggcaactcataaacaccagcatcagatctgacttcttcctca
aactttgcacacacccacacccacatgacatacacacccacacagaaaca
cacacataactgaaaaataaattatatttgaaaacctagtgtttctctga
aaatcaaacttaagtgggcagcctatatttttatttacgaaaccaggaaa
ttctatcattttgttttgttttgttttgttttgttttgttttgtttgttt
gtttttgagacagggtttctctgtatagccctggctgtcctgaactcact
ttgtagaccaggctggcctcgaactcataaatcccgcctctgcctcccaa
gtgctggaattaaaggcgtgcgccaccatgcccggctgaaattctttctt
ttagaataaatcatttcagaaatatcacctcattgacaagagagcttcag
tctccaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4831271_4832400
seq2: B6Ng01-335G12.b_46_1179 (reverse)

seq1  AACATTTGCATACACTTTACTGATTGAGTACTCTTAATTAAAAATAAACT  50
      |||||| |||||| | |||||||||||||||||| | | |||| ||||||
seq2  AACATTGGCATAC-CGTTACTGATTGAGTACTCTAATTGAAAATTAAACT  49

seq1  CTTAGCCAGGTGTGGTGGCGCACGCCTTTGATCCCAGCACTCGGGAGGCA  100
      || ||||||||||||||||||||| ||||||| ||||||||| |||||||
seq2  CTAAGCCAGGTGTGGTGGCGCACG-CTTTGAT-CCAGCACTC-GGAGGCA  96

seq1  G-AGGCAGGCGGA-TTTCTGAGTTCAAGGCCAAGCCTGGTCTAAGTAAAG  148
      | ||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  GAAGGCAGGCGGATTTTCTGAGTTCAAGGCAAAGCCTGGTCTAAGTAAAG  146

seq1  TGAGTTTCAGGACAGCC--AGGGCT-ATACAGAGAAACCCTGTCTCGAAA  195
      |||||||||||||||||   ||||| ||||||||||||||||||||||||
seq2  TGAGTTTCAGGACAGCCCAGGGGCTAATACAGAGAAACCCTGTCTCGAAA  196

seq1  AACAAAAACAAAAAC--AAAAAAAAAAAAAACCTCTTAATAG-AATCTCA  242
      |||||||||||||||  ||||||||||||||||||||||||| |||||||
seq2  AACAAAAACAAAAACAAAAAAAAAAAAAAAACCTCTTAATAGAAATCTCA  246

seq1  GAGTTTGGAACACTTGATCTCAGGCCTGCAGATAGCAATGTTCAAATTGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGAACACTTGATCTCAGGCCTGCAGATAGCAATGTTCAAATTGT  296

seq1  ACCACAATTCTACTGGATTGGGATGCCTAGCTTGTACCAAGATTCCACTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAATTCTACTGGATTGGGATGCCTAGCTTGTACCAAGATTCCACTA  346

seq1  ATTTTATGCCCGGAAGTTGTGGATTGACATCGAGATAGAAAGCAGGATAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGCCCGGAAGTTGTGGATTGACATCGAGATAGAAAGCAGGATAC  396

seq1  CGTGACTTTTGCCTATCATCTCAACATTTGAGAGATAGAGGAAGGAAGAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTTTTGCCTATCATCTCAACATTTGAGAGATAGAGGAAGGAAGAC  446

seq1  CAAAACTTCAAGGCCATCCTTCATTATGTAATGATTTTGAGGCCAGTCTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTCAAGGCCATCCTTCATTATGTAATGATTTTGAGGCCAGTCTG  496

seq1  GGCTACCTGAGATACTATCTCAAACAAATGAACAAAAATGATAGAAAATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCTGAGATACTATCTCAAACAAATGAACAAAAATGATAGAAAATT  546

seq1  AAAACAAACTCTGGAGTCCTGCGAGGATCTAAGAAGGAAGTGTGTTTTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACTCTGGAGTCCTGCGAGGATCTAAGAAGGAAGTGTGTTTTCT  596

seq1  CTAGCTTTCAGAATGAGAACTCATTTTAGGGCTTAACTCCAAGTACAGGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTCAGAATGAGAACTCATTTTAGGGCTTAACTCCAAGTACAGGC  646

seq1  AGGAGATGCACTGCTCTGAGAGAGGTCTCACAAGAGCACCAGGGAACAGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGCACTGCTCTGAGAGAGGTCTCACAAGAGCACCAGGGAACAGA  696

seq1  AAGTCTCTGAGCACAAAAGCAATGTTCTTGTGATGGCTAATCTTAACTAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTGAGCACAAAAGCAATGTTCTTGTGATGGCTAATCTTAACTAT  746

seq1  CAATTTGATTGAACTGGCGACCACCGGGAGATTTGTAAAGCACATTTCTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGATTGAACTGGCGACCACCGGGAGATTTGTAAAGCACATTTCTG  796

seq1  GATGTGTAAACCGTGAAGGCTTTGACACAATCAATGCACTAATCCCTTGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTAAACCGTGAAGGCTTTGACACAATCAATGCACTAATCCCTTGA  846

seq1  TGGATTCGAGATATGCTGCCATTACTGGGAGGTGGTGAAGGGGGTGGGGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCGAGATATGCTGCCATTACTGGGAGGTGGTGAAGGGGGTGGGGC  896

seq1  TTTGTTAGAGGAAATGGATCCACAGGGAAATGTCCATGAGGGCTGGATTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGAGGAAATGGATCCACAGGGAAATGTCCATGAGGGCTGGATTT  946

seq1  TGTCAGTCCTCTTCCTATGACTTCTGTTTCTCTGTTTTCAGACTACCATC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCCTCTTCCTATGACTTCTGTTTCTCTGTTTTCAGACTACCATC  996

seq1  ATGCTCATTACCTCTGTGCTCCACTGTGACCTTCCTGCTCAATCAAGCAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATTACCTCTGTGCTCCACTGTGACCTTCCTGCTCAATCAAGCAA  1046

seq1  TTGAATAATTAACAGTACAGACGTACTACTCTCTTAAGACAAAGACCACT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAATTAACAGTACAGACGTACTACTCTCTTAAGACAAAGACCACT  1096

seq1  AATGTGGCAGGAACTCCCTGAAGACAGGAAAAGAATTC  1130
      ||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGCAGGAACTCCCTGAAGACAGGAAAAGAATTC  1134

seq1: chr19_4691420_4692434
seq2: B6Ng01-335G12.g_66_1075

seq1  GAATTCATTAAACCCACAATCATCAAAAGTTCCTAAACGGCAGCTGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAACCCACAATCATCAAAAGTTCCTAAACGGCAGCTGGCAA  50

seq1  GACTAATCTGCTCAGTGGGTCAATGAGCTTGCCACCAAGTGTGACAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATCTGCTCAGTGGGTCAATGAGCTTGCCACCAAGTGTGACAGTCT  100

seq1  GAGTCCAGTCTCCAGAATCTCCACAGTAGAAGGAAAGAACCAACTGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGTCTCCAGAATCTCCACAGTAGAAGGAAAGAACCAACTGCAAC  150

seq1  AAGTTATTCTCTAATCACACACACACACACACACACACATACACAAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTCTCTAATCACACACACACACACACACACACATACACAAACAC  200

seq1  AAAGTTTTAAAAACATACTGATGTTGTCATATAATATAGAGAAAAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTAAAAACATACTGATGTTGTCATATAATATAGAGAAAAATATT  250

seq1  ACTGTATTACTAACAGGAAAAAACATTTACAGTACATTACTTATCTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTACTAACAGGAAAAAACATTTACAGTACATTACTTATCTAAAT  300

seq1  TTTATAGGAACAAATCCTCTTTAATATCTGGGAAATGTCTGCCTGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGGAACAAATCCTCTTTAATATCTGGGAAATGTCTGCCTGAGTTG  350

seq1  TACAGAGAATAGTCAGAAAATCTACAGTTACCTGGACGTCATGCCCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAATAGTCAGAAAATCTACAGTTACCTGGACGTCATGCCCATTC  400

seq1  CTAAGTCTATTCCACTTTATTGCTTCAGTGGAATGTCAGAGAAAGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCTATTCCACTTTATTGCTTCAGTGGAATGTCAGAGAAAGGAGAG  450

seq1  TATGAAGTATTATTACATGAGTGTCTGGGTCTGGAGAGATGGCTCGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTATTATTACATGAGTGTCTGGGTCTGGAGAGATGGCTCGGGGG  500

seq1  TTAAGAACATGTACTGCTCTTTCAGAAGAGCTGAGTTCAGTTCTCAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACATGTACTGCTCTTTCAGAAGAGCTGAGTTCAGTTCTCAGCAC  550

seq1  CTCTGTTGGGCAACTCATAAACACCAGCATCAGATCTGACTTCTTCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGGGCAACTCATAAACACCAGCATCAGATCTGACTTCTTCCTCA  600

seq1  AACTTTGCACACACCCACACCCACATGACATACACACCCACACAGAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGCACACACCCACACCCACATGACATACACACCCACACAGAAACA  650

seq1  CACACATAACTGAAAAATAAATTATATTTGAAAACCTAGTGTTTCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAACTGAAAAATAAATTATATTTGAAAACCTAGTGTTTCTCTGA  700

seq1  AAATCAAACTTAAGTGGGCAGCCTATATTTTTATTTACGAAACCAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAACTTAAGTGGGCAGCCTATATTTTTATTTACGAAACCAGGAAA  750

seq1  TTCTATCATTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  TTCTATCATTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTT--GT  798

seq1  TTGTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGAAACTC  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG-AACTC  847

seq1  ACTTTGTAGACCAGGCTGGCCTCGAACTCATAAAT-CCGCCTCTGCCTCC  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTTTGTAGACCAGGCTGGCCTCGAACTCATAAATCCCGCCTCTGCCTCC  897

seq1  CAAGTGCTGGAATTAAAGGCGTGCGCCACCATGCCCGGCTGAAATTCTAT  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAGTGCTGGAATTAAAGGCGTGCGCCACCATGCCCGGCTGAAATTCTTT  947

seq1  CTTTTAGAATAAATCTATTTCAGAAAATATCAACCTCATTGACAAAGAGA  999
      ||||||||||||||| ||||||| ||||||| ||||||||||| ||||||
seq2  CTTTTAGAATAAATC-ATTTCAG-AAATATC-ACCTCATTGAC-AAGAGA  993

seq1  GCTTTAGTCT-CAGGGA  1015
      |||| ||||| ||||||
seq2  GCTTCAGTCTCCAGGGA  1010