BAC Information

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BAC

Clone NameB6Ng01-336M21
Chromosome19 (Build37)
Map Location 26,052,302 - 26,177,732
singlet/doubletdoublet
Overlap gene1700048O14Rik
Upstream geneDock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336M21.bB6Ng01-336M21.g
ACCGA121619GA121620
length1,212955
definitionB6Ng01-336M21.b B6Ng01-336M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,052,302 - 26,053,524)(26,176,778 - 26,177,732)
sequence
gaattcagtagatgttgctggcgaagttgctagaacagactgtcaaaaag
tagatagacatgtgaccattgtttctcatcttcttctgcaggcaacatgg
atacaagactgacatactgtcactgtcagcttaattcttggtgtatttgt
acgtcattacctctaactgttgtccacacgtcctggttttcctttcctta
tggccttagctttataatactagttttcaaaggcagaagagaaggttttc
agttttagctacaggatggtccatcacaatttcatcattattgttggtaa
atgatagcaatatacaccaaaatctcttaactacatgcaaagttgggctc
ttacttgcaatagtgaccaaaactgcttcctacaaacctaggaattctgt
tagatgcagaaaagatacatgctgtgccaataatggcctcagtccatgga
gaatcctccttgagagaggagaacttttatttcaaccgtctttactagaa
tatagtccactatcctttgcacagttggtgattgacggagtattccaaat
ctgctcgtggacatttcataccattctattcttttccagttcattcagta
ctgagcaccaagagaaacataacataacataacatatgtatcataacata
atggtcctgtgtctatctttcatcagagcagactcccaaaagtatctgtg
gcttctaagaaatcacttgattgaggaaagaccactgggtcttaagagaa
gtaactggagagaaaacagatagcaaccccccccccatagagagcagtac
atgtattatgattgtgtaaactttgcaagcacattggacatacatagcca
aatattcctcttaggttatgaagcacgtgagcatgcttctgaatgtttgt
tattgctcaaggcacatctacccttgaaatgcagcagcaagttaatatca
gtgggggaaatatttgtcatgttctcatctcatagagattccggttggag
aagagacaggaaagggtagcatcaagaatttctgagtcttgtcaccgaaa
gcaggaggtagaggctatgttgttgttatattataactaaacatatttag
tatagactagccagtgcagccaattaaaatagaaaccttattggaaaagg
atgtaatccaggaactggtaccatgactaatgcctatgctggagggtcct
taaaggttactc

gaattctttgaaaatattcagtaattcattagatcagaagtcatgtcttt
gttaaagaattctagactatttacttaaaacacatcaggatcagatagcc
cacctttacagaggctccacctaccagaagctctgtctacatggtatgaa
gctccattgttctatttcatgatttgagacagtttgtgctcagatgtggc
aaatgactgtccaatatgagtatgctacccagtctgtgcagttagagcct
tgtctagagttactctttagacacgggtctcttcatgacaatatgcctag
gatgtgatggcttaagatacccagagaaaacaactgtctttcaagagaga
tatggtgttcattagatagatgatggagagtgattataagcatgtagcat
tcctacaaaggacggagaataaagccttgggaaatgatggtggagttttc
tggaactggagacagtcctgaacaatgctattcacttcaatagtggagta
acaggcaacactaatggaatggactgagctcctcattaaataattctgtt
acttggagactattacttaagtaattgatgcttctgtttatctgcttaat
caataattaggttggaggaaatggtaattaacagtctatggattccattc
tcctctgatctgactttgcatgttggccttggacaaagaaataaaaaaat
gcaattcatattaaacatcatggcatctgccccacatttattgctctggt
ggaagatatcagaacatgagtataaaaggatcattttccttctactaggt
tgcttcatccagccttgatatgagggtttgtgcctagtattattgcatct
tattatgctatactgtgttctgttgatatcactgggagaactgccctttt
ctgaagggagacagaggagcagaagatctgggggaatatgaggagtggag
atgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26052302_26053524
seq2: B6Ng01-336M21.b_47_1258

seq1  GAATTCAGTAGATGTTGCTGGCGAAGTTGCTAGAACAGACTGTCAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGATGTTGCTGGCGAAGTTGCTAGAACAGACTGTCAAAAAG  50

seq1  TAGATAGACATGTGACCATTGTTTCTCATCTTCTTCTGCAGGCAACATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGACATGTGACCATTGTTTCTCATCTTCTTCTGCAGGCAACATGG  100

seq1  ATACAAGACTGACATACTGTCACTGTCAGCTTAATTCTTGGTGTATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGACTGACATACTGTCACTGTCAGCTTAATTCTTGGTGTATTTGT  150

seq1  ACGTCATTACCTCTAACTGTTGTCCACACGTCCTGGTTTTCCTTTCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCATTACCTCTAACTGTTGTCCACACGTCCTGGTTTTCCTTTCCTTA  200

seq1  TGGCCTTAGCTTTATAATACTAGTTTTCAAAGGCAGAAGAGAAGGTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTAGCTTTATAATACTAGTTTTCAAAGGCAGAAGAGAAGGTTTTC  250

seq1  AGTTTTAGCTACAGGATGGTCCATCACAATTTCATCATTATTGTTGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGCTACAGGATGGTCCATCACAATTTCATCATTATTGTTGGTAA  300

seq1  ATGATAGCAATATACACCAAAATCTCTTAACTACATGCAAAGTTGGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCAATATACACCAAAATCTCTTAACTACATGCAAAGTTGGGCTC  350

seq1  TTACTTGCAATAGTGACCAAAACTGCTTCCTACAAACCTAGGAATTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGCAATAGTGACCAAAACTGCTTCCTACAAACCTAGGAATTCTGT  400

seq1  TAGATGCAGAAAAGATACATGCTGTGCCAATAATGGCCTCAGTCCATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCAGAAAAGATACATGCTGTGCCAATAATGGCCTCAGTCCATGGA  450

seq1  GAATCCTCCTTGAGAGAGGAGAACTTTTATTTCAACCGTCTTTACTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTCCTTGAGAGAGGAGAACTTTTATTTCAACCGTCTTTACTAGAA  500

seq1  TATAGTCCACTATCCTTTGCACAGTTGGTGATTGACGGAGTATTCCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCACTATCCTTTGCACAGTTGGTGATTGACGGAGTATTCCAAAT  550

seq1  CTGCTCGTGGACATTTCATACCATTCTATTCTTTTCCAGTTCATTCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCGTGGACATTTCATACCATTCTATTCTTTTCCAGTTCATTCAGTA  600

seq1  CTGAGCACCAAGAGAAACATAACATAACATAACATATGTATCATAACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACCAAGAGAAACATAACATAACATAACATATGTATCATAACATA  650

seq1  ATGGTCCTGTGTCTATCTTTCATCAGAGCAGACTCCCAAAAGTATCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTGTGTCTATCTTTCATCAGAGCAGACTCCCAAAAGTATCTGTG  700

seq1  GCTTCTAAGAAATCACTTGATTGAGGAAAGACCACTGGGTCTTAAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAAGAAATCACTTGATTGAGGAAAGACCACTGGGTCTTAAGAGAA  750

seq1  GTAACTGGAGAGAAAACAGATAGCAACCCCCCCCCCATAGAGAGCAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGGAGAGAAAACAGATAGCAACCCCCCCCCCATAGAGAGCAGTAC  800

seq1  ATGTATTATGATTGTGTAAACTTTGCAAGCACATTGGACATACATAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTATGATTGTGTAAACTTTGCAAGCACATTGGACATACATAGCCA  850

seq1  AATATTCCTCTTAGGTTATGAAGCACGTGAGCATGCTTCTGAATGTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCTCTTAGGTTATGAAGCACGTGAGCATGCTTCTGAATGTTTGT  900

seq1  TATTGCTCAAGGCACATCTACCCTTGAAATGCAGCAGGCAAGTTAATATC  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATTGCTCAAGGCACATCTACCCTTGAAATGCAGCA-GCAAGTTAATATC  949

seq1  AGTGGGGGAAATATTTGTCATGTTCTCATCTCATAGAGATTCCGGTTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGAAATATTTGTCATGTTCTCATCTCATAGAGATTCCGGTTGGA  999

seq1  GAAGAGACAGGAAAGGGTAGCCATCAAAGAATTTCTGAGTC-TGTCACCG  1049
      |||||||||||||||||||| |||| ||||||||||||||| ||||||||
seq2  GAAGAGACAGGAAAGGGTAG-CATC-AAGAATTTCTGAGTCTTGTCACCG  1047

seq1  AAAGGCAGGGAGGTAAGAGGCTATGTGTTGGTTATA-TATACATAAACAT  1098
      ||| ||| |||||| |||||||||||  | |||||| ||||  |||||||
seq2  AAA-GCA-GGAGGT-AGAGGCTATGTTGTTGTTATATTATAACTAAACAT  1094

seq1  ATTTAGGTATAGACTAAGCAAGTTGCAGCACATAAAATAAGAAACTTTAA  1148
      ||||| ||||||||| ||| || ||||||  || |||  |||||| ||| 
seq2  ATTTA-GTATAGACT-AGCCAG-TGCAGCCAATTAAAATAGAAACCTTA-  1140

seq1  TTTTGGAGAAGGATGTAATCACAGTATCTGTCACCATGGACTAAATGCCT  1198
        ||||| |||||||||||| ||| | |||  ||||| |||| |||||||
seq2  --TTGGAAAAGGATGTAATC-CAGGAACTGGTACCAT-GACT-AATGCCT  1185

seq1  ATGCT-GAGTGT-CTTAAAGTTTACTC  1223
      ||||| ||| || ||||||| ||||||
seq2  ATGCTGGAGGGTCCTTAAAGGTTACTC  1212


seq1: chr19_26176778_26177732
seq2: B6Ng01-336M21.g_68_1022 (reverse)

seq1  TCCATCTCCACTCCTCATATTCCCCCAGATCTTCTGCTCCTCTGTCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCCACTCCTCATATTCCCCCAGATCTTCTGCTCCTCTGTCTCCC  50

seq1  TTCAGAAAAGGGCAGTTCTCCCAGTGATATCAACAGAACACAGTATAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAAGGGCAGTTCTCCCAGTGATATCAACAGAACACAGTATAGCA  100

seq1  TAATAAGATGCAATAATACTAGGCACAAACCCTCATATCAAGGCTGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGATGCAATAATACTAGGCACAAACCCTCATATCAAGGCTGGATG  150

seq1  AAGCAACCTAGTAGAAGGAAAATGATCCTTTTATACTCATGTTCTGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACCTAGTAGAAGGAAAATGATCCTTTTATACTCATGTTCTGATAT  200

seq1  CTTCCACCAGAGCAATAAATGTGGGGCAGATGCCATGATGTTTAATATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCAGAGCAATAAATGTGGGGCAGATGCCATGATGTTTAATATGA  250

seq1  ATTGCATTTTTTTATTTCTTTGTCCAAGGCCAACATGCAAAGTCAGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATTTTTTTATTTCTTTGTCCAAGGCCAACATGCAAAGTCAGATCA  300

seq1  GAGGAGAATGGAATCCATAGACTGTTAATTACCATTTCCTCCAACCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAATGGAATCCATAGACTGTTAATTACCATTTCCTCCAACCTAAT  350

seq1  TATTGATTAAGCAGATAAACAGAAGCATCAATTACTTAAGTAATAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTAAGCAGATAAACAGAAGCATCAATTACTTAAGTAATAGTCTC  400

seq1  CAAGTAACAGAATTATTTAATGAGGAGCTCAGTCCATTCCATTAGTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAACAGAATTATTTAATGAGGAGCTCAGTCCATTCCATTAGTGTTG  450

seq1  CCTGTTACTCCACTATTGAAGTGAATAGCATTGTTCAGGACTGTCTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTACTCCACTATTGAAGTGAATAGCATTGTTCAGGACTGTCTCCAG  500

seq1  TTCCAGAAAACTCCACCATCATTTCCCAAGGCTTTATTCTCCGTCCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAAACTCCACCATCATTTCCCAAGGCTTTATTCTCCGTCCTTTG  550

seq1  TAGGAATGCTACATGCTTATAATCACTCTCCATCATCTATCTAATGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGCTACATGCTTATAATCACTCTCCATCATCTATCTAATGAACA  600

seq1  CCATATCTCTCTTGAAAGACAGTTGTTTTCTCTGGGTATCTTAAGCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCTCTCTTGAAAGACAGTTGTTTTCTCTGGGTATCTTAAGCCATC  650

seq1  ACATCCTAGGCATATTGTCATGAAGAGACCCGTGTCTAAAGAGTAACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTAGGCATATTGTCATGAAGAGACCCGTGTCTAAAGAGTAACTCT  700

seq1  AGACAAGGCTCTAACTGCACAGACTGGGTAGCATACTCATATTGGACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGCTCTAACTGCACAGACTGGGTAGCATACTCATATTGGACAGT  750

seq1  CATTTGCCACATCTGAGCACAAACTGTCTCAAATCATGAAATAGAACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCACATCTGAGCACAAACTGTCTCAAATCATGAAATAGAACAAT  800

seq1  GGAGCTTCATACCATGTAGACAGAGCTTCTGGTAGGTGGAGCCTCTGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTCATACCATGTAGACAGAGCTTCTGGTAGGTGGAGCCTCTGTAA  850

seq1  AGGTGGGCTATCTGATCCTGATGTGTTTTAAGTAAATAGTCTAGAATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGCTATCTGATCCTGATGTGTTTTAAGTAAATAGTCTAGAATTCT  900

seq1  TTAACAAAGACATGACTTCTGATCTAATGAATTACTGAATATTTTCAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAGACATGACTTCTGATCTAATGAATTACTGAATATTTTCAAAG  950

seq1  AATTC  955
      |||||
seq2  AATTC  955


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