BAC Information

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BAC

Clone NameB6Ng01-337J12
Chromosome19 (Build37)
Map Location 42,417,358 - 42,509,126
singlet/doubletdoublet
Overlap geneCrtac1
Upstream genePik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik
Downstream geneD19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291, EG627624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337J12.bB6Ng01-337J12.g
ACCGA122168GA122169
length1,1311,087
definitionB6Ng01-337J12.b B6Ng01-337J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,417,358 - 42,418,486)(42,508,054 - 42,509,126)
sequence
gaattcacaaccggcatgtctgtccagtggaagtctggctacagttggct
tgtagctgggtctcagaatatctgactgtgttcccagagccctcagagaa
aagttaacaatgaacaaagagccagacagggaggtgcatgcctacgatcc
cagtatttgggaaactgaggcaggaggaacacaagctggaaacaaattaa
aaacaaaacaaaacaaaacaaaacaagaaaacccgaatagcccctgctgt
tcctcacggggattccagatatcaccattttttgagtccttgttttcttt
ctatcgtgtcacagcttggatgtgaaagatctctcatcagctcatgtgtt
ggaggatgtcatcctgggttcatggtgctgtttttgggaggtcacgaagt
gtgattaagctagaagcgagtttctggggacaggccttgaaggctgtgtc
tgtttctcattctggcccaagctttctgagtcacggtctgccacatgaac
aagctgtaccgccagctcccattgctgccagctcccattgccgccagctc
ccattgccaccagctcccactgccgcagcccaggctttctcagcctctgc
atcttcctaacggtgctggaccacaccgtctgaaactgtgagcgaaaagc
agcctctctgctccgaagcgtttctgtcaggcatttgaccacagttgatg
cgagaagtaactaatatacagctgtaactaaatgtttcccactttcaatc
ccatacctttgagcacagattatccagattatctctttggaaatgtacgt
aacgatctttcttcctttccgcatgtttaattcattgaaagccattgaag
ttaaataggaccggaaaacatatggaaaggcattaagacaggagattccc
atgttgcattccggaataggatctgtgtgcagaccaagggattctctgtg
aaagagtagggctttggaaatgggaggttcctggtggatgagggtcctgg
gaaagggtatattgcctaggctgaaagggcatccagaaataatgccaagc
agattttaattcttgattagatgaggatgacctcacaaagacaacgctcc
actgaaaacaggtaaacttagatgaatgaaa
gaattcatttcttcagggacaaccagcctaaaacacagtctttctcttca
atttcaaatgtccaaatccccaagaggtaaaatatttgggatttgtttgg
ggttttgctactttgctacttcaactcatctggagacaaatcctgaccta
aactgacacgaaaccactttcccttcaatgcttactctagaaatcctgac
atttcgctgcggaaatatgaatgtgtctgattttcagatgcgactccaga
cctcacaggatggtgcaacatgtttggcacctctctgaattctaaaacac
cctgccttcaagggtttctagacacaggcaacattaggagaattagaaat
tctaggaccagatctgcccatcccatcccatcccttatccctcgaaggac
tccctgagtggaacacctgtcactttacatttcactgtcctttcctggca
ccttggctctgtcatccccttccctgactagagagagtgagatcattgca
gggttgttttgcaccgacaacctattcacatctgggtggctaatgttgat
aattactgagctggttactaaatctgtcaggtttaggtgaggtgagtctc
ggcagctggggctgctgcttacagcttcccaggcagagagagagaaagag
agagagaggtgagaacaaatccaagaaaggtgtgttcggatgcttgggct
ccagtgagactggttaattaccagtcacttgctgtctctccgagttggag
cttctggctaaggaacagtcgtgcatcagacagaatccgacaacctgcta
tttatttccacataaagaaagtggcagggactaagacgccgaggacaagt
gtggagacagtctctcaagtgccaggaccacagcccacacagatgcagat
atcctcagcacagggccggtagtgtgagccatcggaatgctgaagcccta
ctgctgctcctttggagggaaactgggggacctaggggttgtgcttggga
ccaagtgtacttgctgcctgggatggaagtgtattgatgcagaaccttgg
attatgtcctagccaacacccccctgcccccggacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_42417358_42418486
seq2: B6Ng01-337J12.b_48_1178

seq1  GAATTCACAACCGGCATGTCTGTCCAGTGGAAGTCTGGCTACAGTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACCGGCATGTCTGTCCAGTGGAAGTCTGGCTACAGTTGGCT  50

seq1  TGTAGCTGGGTCTCAGAATATCTGACTGTGTTCCCAGAGCCCTCAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGGGTCTCAGAATATCTGACTGTGTTCCCAGAGCCCTCAGAGAA  100

seq1  AAGTTAACAATGAACAAAGAGCCAGACAGGGAGGTGCATGCCTACGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAACAATGAACAAAGAGCCAGACAGGGAGGTGCATGCCTACGATCC  150

seq1  CAGTATTTGGGAAACTGAGGCAGGAGGAACACAAGCTGGAAACAAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTGGGAAACTGAGGCAGGAGGAACACAAGCTGGAAACAAATTAA  200

seq1  AAACAAAACAAAACAAAACAAAACAAGAAAACCCGAATAGCCCCTGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAAAACAAAACAAGAAAACCCGAATAGCCCCTGCTGT  250

seq1  TCCTCACGGGGATTCCAGATATCACCATTTTTTGAGTCCTTGTTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACGGGGATTCCAGATATCACCATTTTTTGAGTCCTTGTTTTCTTT  300

seq1  CTATCGTGTCACAGCTTGGATGTGAAAGATCTCTCATCAGCTCATGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGTGTCACAGCTTGGATGTGAAAGATCTCTCATCAGCTCATGTGTT  350

seq1  GGAGGATGTCATCCTGGGTTCATGGTGCTGTTTTTGGGAGGTCACGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGTCATCCTGGGTTCATGGTGCTGTTTTTGGGAGGTCACGAAGT  400

seq1  GTGATTAAGCTAGAAGCGAGTTTCTGGGGACAGGCCTTGAAGGCTGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAAGCTAGAAGCGAGTTTCTGGGGACAGGCCTTGAAGGCTGTGTC  450

seq1  TGTTTCTCATTCTGGCCCAAGCTTTCTGAGTCACGGTCTGCCACATGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCATTCTGGCCCAAGCTTTCTGAGTCACGGTCTGCCACATGAAC  500

seq1  AAGCTGTACCGCCAGCTCCCATTGCTGCCAGCTCCCATTGCCGCCAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTACCGCCAGCTCCCATTGCTGCCAGCTCCCATTGCCGCCAGCTC  550

seq1  CCATTGCCACCAGCTCCCACTGCCGCAGCCCAGGCTTTCTCAGCCTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCCACCAGCTCCCACTGCCGCAGCCCAGGCTTTCTCAGCCTCTGC  600

seq1  ATCTTCCTAACGGTGCTGGACCACACCGTCTGAAACTGTGAGCGAAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTAACGGTGCTGGACCACACCGTCTGAAACTGTGAGCGAAAAGC  650

seq1  AGCCTCTCTGCTCCGAAGCGTTTCTGTCAGGCATTTGACCACAGTTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCTGCTCCGAAGCGTTTCTGTCAGGCATTTGACCACAGTTGATG  700

seq1  CGAGAAGTAACTAATATACAGCTGTAACTAAATGTTTCCCACTTTCAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAGTAACTAATATACAGCTGTAACTAAATGTTTCCCACTTTCAATC  750

seq1  CCATACCTTTGAGCACAGATTATCCAGATTATCTCTTTGGAAATGTACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTTTGAGCACAGATTATCCAGATTATCTCTTTGGAAATGTACGT  800

seq1  AACGATCTTTCTTCCTTTCCGCATGTTTAATTCATTGAAAGCCATTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATCTTTCTTCCTTTCCGCATGTTTAATTCATTGAAAGCCATTGAAG  850

seq1  TTAAATAGGACCGGAAAACATATGGAAAGGCATTAAGACAGGAGATTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGGACCGGAAAACATATGGAAAGGCATTAAGACAGGAGATTCCC  900

seq1  ATGTTGCATTCCGGAATAGGATCTGTGTGCAGACCAA-GGATTCTCTGTG  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTTGCATTCCGGAATAGGATCTGTGTGCAGACCAAGGGATTCTCTGTG  950

seq1  AAAGAGTAGGGCTTTGGGAATGGGAGGTTCCTGGGTGGGATGAAGGGTCT  999
      ||||||||||||||||| ||||||||||||||||   |||||| ||  ||
seq2  AAAGAGTAGGGCTTTGGAAATGGGAGGTTCCTGG--TGGATGAGGGTCCT  998

seq1  GGGAA--GGTATATTGCCTAGGCTTGAAAAGGGCATCCAGAAATAATGCA  1047
      |||||  |||||||||||||||||   |||||||||||||||||||||| 
seq2  GGGAAAGGGTATATTGCCTAGGCT--GAAAGGGCATCCAGAAATAATGCC  1046

seq1  AGGCAGATTT--AATCTTGATTTAAGATGAAGAAGACCTCACAAAGACAA  1095
      | ||||||||  | ||||||||  |||||| || ||||||||||||||||
seq2  AAGCAGATTTTAATTCTTGATT--AGATGAGGATGACCTCACAAAGACAA  1094

seq1  CGCT-CACTGAAAACAG--TAACTAAGATGAAGGAAA  1129
      |||| ||||||||||||   |||| ||||||| ||||
seq2  CGCTCCACTGAAAACAGGTAAACTTAGATGAATGAAA  1131

seq1: chr19_42508054_42509126
seq2: B6Ng01-337J12.g_68_1154 (reverse)

seq1  GTGT-CGGGGGCA-GGGGGTGTT-GCTAGAACATAATCCAAGGTTCTGCA  47
      |||| |||||||| ||||||||| ||||| ||||||||||||||||||||
seq2  GTGTCCGGGGGCAGGGGGGTGTTGGCTAGGACATAATCCAAGGTTCTGCA  50

seq1  TCAATACACTT-CATCC--AGCAGCAAGTACACTTGGTCCCAAGCAC-AC  93
      ||||||||||| |||||   ||||||||||||||||||||||||||| ||
seq2  TCAATACACTTCCATCCCAGGCAGCAAGTACACTTGGTCCCAAGCACAAC  100

seq1  CCCT-GGT-CCCCAG-TTCCCTCCAAAGGAGCAGCAGTAGG--CTCAGCA  138
      |||| ||| |||||| |||||||||||||||||||||||||   ||||||
seq2  CCCTAGGTCCCCCAGTTTCCCTCCAAAGGAGCAGCAGTAGGGCTTCAGCA  150

seq1  TCCCGATGGCTCACACTACC-GCCCTGTGCTGAGGATATCTGCATCTGTG  187
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCCGATGGCTCACACTACCGGCCCTGTGCTGAGGATATCTGCATCTGTG  200

seq1  T-GGCTGTGGTCCTGGCACTTGAGAGACTGTCTCCACACTTGTCCTCGGC  236
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTGGTCCTGGCACTTGAGAGACTGTCTCCACACTTGTCCTCGGC  250

seq1  GTCTTAGTCCCTGCCACTTTCTTTATGTGGAAATAAATAGCAGGTTGTCG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTCCCTGCCACTTTCTTTATGTGGAAATAAATAGCAGGTTGTCG  300

seq1  GATTCTGTCTGATGCACGACTGTTCCTTAGCCAGAAGCTCCAACTCGGAG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTCTGATGCACGACTGTTCCTTAGCCAGAAGCTCCAACTCGGAG  350

seq1  AGACAGCAAGTGACTGGTAATTAACCAGTCTCACTGGAGCCCAAGCATCC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAAGTGACTGGTAATTAACCAGTCTCACTGGAGCCCAAGCATCC  400

seq1  GAACACACCTTTCTTGGATTTGTTCTCACCTCTCTCTCTCTTTCTCTCTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACCTTTCTTGGATTTGTTCTCACCTCTCTCTCTCTTTCTCTCTC  450

seq1  TCTGCCTGGGAAGCTGTAAGCAGCAGCCCCAGCTGCCGAGACTCACCTCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGGGAAGCTGTAAGCAGCAGCCCCAGCTGCCGAGACTCACCTCA  500

seq1  CCTAAACCTGACAGATTTAGTAACCAGCTCAGTAATTATCAACATTAGCC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACCTGACAGATTTAGTAACCAGCTCAGTAATTATCAACATTAGCC  550

seq1  ACCCAGATGTGAATAGGTTGTCGGTGCAAAACAACCCTGCAATGATCTCA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATGTGAATAGGTTGTCGGTGCAAAACAACCCTGCAATGATCTCA  600

seq1  CTCTCTCTAGTCAGGGAAGGGGATGACAGAGCCAAGGTGCCAGGAAAGGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTAGTCAGGGAAGGGGATGACAGAGCCAAGGTGCCAGGAAAGGA  650

seq1  CAGTGAAATGTAAAGTGACAGGTGTTCCACTCAGGGAGTCCTTCGAGGGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAATGTAAAGTGACAGGTGTTCCACTCAGGGAGTCCTTCGAGGGA  700

seq1  TAAGGGATGGGATGGGATGGGCAGATCTGGTCCTAGAATTTCTAATTCTC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGATGGGATGGGATGGGCAGATCTGGTCCTAGAATTTCTAATTCTC  750

seq1  CTAATGTTGCCTGTGTCTAGAAACCCTTGAAGGCAGGGTGTTTTAGAATT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTGCCTGTGTCTAGAAACCCTTGAAGGCAGGGTGTTTTAGAATT  800

seq1  CAGAGAGGTGCCAAACATGTTGCACCATCCTGTGAGGTCTGGAGTCGCAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGTGCCAAACATGTTGCACCATCCTGTGAGGTCTGGAGTCGCAT  850

seq1  CTGAAAATCAGACACATTCATATTTCCGCAGCGAAATGTCAGGATTTCTA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATCAGACACATTCATATTTCCGCAGCGAAATGTCAGGATTTCTA  900

seq1  GAGTAAGCATTGAAGGGAAAGTGGTTTCGTGTCAGTTTAGGTCAGGATTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGCATTGAAGGGAAAGTGGTTTCGTGTCAGTTTAGGTCAGGATTT  950

seq1  GTCTCCAGATGAGTTGAAGTAGCAAAGTAGCAAAACCCCAAACAAATCCC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGATGAGTTGAAGTAGCAAAGTAGCAAAACCCCAAACAAATCCC  1000

seq1  AAATATTTTACCTCTTGGGGATTTGGACATTTGAAATTGAAGAGAAAGAC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTACCTCTTGGGGATTTGGACATTTGAAATTGAAGAGAAAGAC  1050

seq1  TGTGTTTTAGGCTGGTTGTCCCTGAAGAAATGAATTC  1073
      |||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTAGGCTGGTTGTCCCTGAAGAAATGAATTC  1087