BAC Information

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BAC

Clone NameB6Ng01-340B20
Chromosome19 (Build37)
Map Location 49,717,209 - 49,718,139
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340B20.bB6Ng01-340B20.g
ACCGA123917GA123918
length9311,204
definitionB6Ng01-340B20.b B6Ng01-340B20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctctctcctttatgtaggcatgcagattaaactcaggctctaa
ggcctgtaagacaggtgttttaccaactgagtcatctctccagctcatga
ttaaggtttgttgttcgcttttgtttttaatttaaataattttattagtg
cccttgggtgtatctagctttatttatctattcagaggattggattgtag
ataaacctttctactgtttgttgatttttgacaagtaaatatttgtcaag
atatttctagttgaaaatataataattatttacattcatataaggtgata
attttatattgcataaaatgtgtatgaaattgggagaacaaaaattttta
tattttcaaacatttttatgagttgacaaatactatcccaactattttga
aatttaaggcaaaaaaagatgtaaactatagtcaccctgatatgttaaag
aaattcatgcctgttctgtgatgatatctgtgagctcattcttcctatac
ttaatcattgatagcaattctatatcaaatatcccaccaagaaacactaa
ctttgtctgggatacttgggtatttcattaatttttttttacaatgagat
ttttttttttatttttgcatgtgtgaactcatttttttaaattaggtatt
tatttcatttacatttccaatgctatcccaaaagtcccccacacgctccc
ccacccactcccccacccacccactcctacttcttggccctggcatttcc
ctgtactgaggaatataaagtttgcatgaccaacgggcctctctttcccc
tgatggccaactagaccatcttctgatacatttgcagctagagacacaag
ctctggggggggtgggggggtactggttagttcatattggttgtccacta
taggtttcagatccctttaactcctgggata

gaattctcacctgaggaataccgaatagcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gtttatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgcccggggcctagcaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatcttcaaccct
atagtggaacacattatgactaccagtacccctgagctcttgactctagc
tgcatatgtatcaaaagatgactagtcgggcatcactgaagagaggccca
ttgacacgcaaactttgtgtgcccgtacaggaacgccagccatggggaat
tggcaggttaggcaatctattctctagctactacgactcatgcactgcat
ctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49717209_49718139
seq2: B6Ng01-340B20.b_44_974 (reverse)

seq1  TATCCAAGGAGCTAAAGGGATCTGCAAACCTATAGGTGGAACAACAATAT  50
      ||||| ||||| |||||||||||| ||||||||| |||||  | ||||||
seq2  TATCCCAGGAGTTAAAGGGATCTG-AAACCTATA-GTGGACAACCAATAT  48

seq1  GAACTAACCAGTACCCCCC--ACCCCCCCAGAGCTTGTGTCTCTAGCTGC  98
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  GAACTAACCAGTACCCCCCCACCCCCCCCAGAGCTTGTGTCTCTAGCTGC  98

seq1  AAATGTATCAGAAGATGGTCTAGTTGGCCATCAGGGGAAAGAGAGGCCCG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATCAGAAGATGGTCTAGTTGGCCATCAGGGGAAAGAGAGGCCCG  148

seq1  TTGGTCATGCAAACTTTATATTCCTCAGTACAGGGAAATGCCAGGGCCAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATGCAAACTTTATATTCCTCAGTACAGGGAAATGCCAGGGCCAA  198

seq1  GAAGTAGGAGTGGGTGGGTGGGGGAGTGGGTGGGGGAGCGTGTGGGGGAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGAGTGGGTGGGTGGGGGAGTGGGTGGGGGAGCGTGTGGGGGAC  248

seq1  TTTTGGGATAGCATTGGAAATGTAAATGAAATAAATACCTAATTTAAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGATAGCATTGGAAATGTAAATGAAATAAATACCTAATTTAAAAA  298

seq1  AATGAGTTCACACATGCAAAAATAAAAAAAAAAATCTCATTGTAAAAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTCACACATGCAAAAATAAAAAAAAAAATCTCATTGTAAAAAAA  348

seq1  AATTAATGAAATACCCAAGTATCCCAGACAAAGTTAGTGTTTCTTGGTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGAAATACCCAAGTATCCCAGACAAAGTTAGTGTTTCTTGGTGG  398

seq1  GATATTTGATATAGAATTGCTATCAATGATTAAGTATAGGAAGAATGAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGATATAGAATTGCTATCAATGATTAAGTATAGGAAGAATGAGC  448

seq1  TCACAGATATCATCACAGAACAGGCATGAATTTCTTTAACATATCAGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATATCATCACAGAACAGGCATGAATTTCTTTAACATATCAGGGT  498

seq1  GACTATAGTTTACATCTTTTTTTGCCTTAAATTTCAAAATAGTTGGGATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATAGTTTACATCTTTTTTTGCCTTAAATTTCAAAATAGTTGGGATA  548

seq1  GTATTTGTCAACTCATAAAAATGTTTGAAAATATAAAAATTTTTGTTCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTCAACTCATAAAAATGTTTGAAAATATAAAAATTTTTGTTCTC  598

seq1  CCAATTTCATACACATTTTATGCAATATAAAATTATCACCTTATATGAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCATACACATTTTATGCAATATAAAATTATCACCTTATATGAAT  648

seq1  GTAAATAATTATTATATTTTCAACTAGAAATATCTTGACAAATATTTACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAATTATTATATTTTCAACTAGAAATATCTTGACAAATATTTACT  698

seq1  TGTCAAAAATCAACAAACAGTAGAAAGGTTTATCTACAATCCAATCCTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAATCAACAAACAGTAGAAAGGTTTATCTACAATCCAATCCTCT  748

seq1  GAATAGATAAATAAAGCTAGATACACCCAAGGGCACTAATAAAATTATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATAAATAAAGCTAGATACACCCAAGGGCACTAATAAAATTATTT  798

seq1  AAATTAAAAACAAAAGCGAACAACAAACCTTAATCATGAGCTGGAGAGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAACAAAAGCGAACAACAAACCTTAATCATGAGCTGGAGAGAT  848

seq1  GACTCAGTTGGTAAAACACCTGTCTTACAGGCCTTAGAGCCTGAGTTTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTTGGTAAAACACCTGTCTTACAGGCCTTAGAGCCTGAGTTTAA  898

seq1  TCTGCATGCCTACATAAAGGAGAGAGGGAATTC  931
      |||||||||||||||||||||||||||||||||
seq2  TCTGCATGCCTACATAAAGGAGAGAGGGAATTC  931


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