BAC Information

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BAC

Clone NameB6Ng01-340G08
Chromosome19 (Build37)
Map Location 24,080,112 - 24,263,724
singlet/doubletdoublet
Overlap geneGm967, 1700021P04Rik, Tjp2
Upstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
Downstream geneFxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340G08.bB6Ng01-340G08.g
ACCGA124116GA124117
length1,029179
definitionB6Ng01-340G08.b B6Ng01-340G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,080,112 - 24,081,133)(24,263,546 - 24,263,724)
sequence
gaattctttccctgggacatacctttgcaactttggggaagtaactcaaa
tagaagaaaagtgtgtcaagaaactagatacataaagctcacattcagag
tcagtgtatgtccagacagagacttagtctcatgtagcccatgatagcct
aaactcactatgtatcgatggctgatcttgaatttctgatcctcctgtct
ccacctctccagggctagcacttaccaactgagctactaagatgccagat
ctttaaagttcagattccattttagagaacctgagtttgaactcaggtaa
actaacaggctggtacctagcattagattccaagttgccccccaacaaaa
cctgagcctagctccagtctctaggctaatcacccctcaaaaaaagcccc
accattttcaggttacaccctcaacaagaccagtgtctctgggttagtct
tccaacaaacctgcacccccaggttacaaacctacctcctgccaaataac
cacaaatgcagaggagagcagaagttaagtttgtgatatgtctcccagca
ccagccaatcatgttcaaggccacaggagctttccaattagatgcttgaa
cacatatactccctgcttgctgcttactataaagccttgcccccaataaa
cattcagggcaaggagagaatgctttccctgggacatacctttgcaactt
tggggaagtaactcaaatagaagaaacgtgtgtcaagaaacacacgccaa
aaccattctgcatgatggcggtgggttggaggggattgggggaagctagc
tcaaatagaataaagaccctgcttttgagttgcatccctgtctgtttttg
ggggagtcactaacattttcctggcacaacacttacatctctagcccaga
gccaagagactgttaacaaaagttctaggaatacacagagacttaatggt
tccaccttttactgacaacttagacttgcttggaaattaccctgcaagac
tcatctctgcctggggcatttcttataca
caggccagccagagctacatcgtgaaactcactgtccaaaaatcacaact
cccaggaaacaacaacaaatgaacaggcaaacaaaacaaaaaaagaaaga
ggcttccttctgatagtggcttgtgccaggagagagagagagagagagag
agagagagagagagagggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24080112_24081133
seq2: B6Ng01-340G08.b_44_1072

seq1  GAATTCTTTCCCTGGGACATACCTTTGCAACTTTGGGGAAGTAACTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCTGGGACATACCTTTGCAACTTTGGGGAAGTAACTCAAA  50

seq1  TAGAAGAAAAGTGTGTCAAGAAACTAGATACATAAAGCTCACATTCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAAAAGTGTGTCAAGAAACTAGATACATAAAGCTCACATTCAGAG  100

seq1  TCAGTGTATGTCCAGACAGAGACTTAGTCTCATGTAGCCCATGATAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTATGTCCAGACAGAGACTTAGTCTCATGTAGCCCATGATAGCCT  150

seq1  AAACTCACTATGTATCGATGGCTGATCTTGAATTTCTGATCCTCCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACTATGTATCGATGGCTGATCTTGAATTTCTGATCCTCCTGTCT  200

seq1  CCACCTCTCCAGGGCTAGCACTTACCAACTGAGCTACTAAGATGCCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTCCAGGGCTAGCACTTACCAACTGAGCTACTAAGATGCCAGAT  250

seq1  CTTTAAAGTTCAGATTCCATTTTAGAGAACCTGAGTTTGAACTCAGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGTTCAGATTCCATTTTAGAGAACCTGAGTTTGAACTCAGGTAA  300

seq1  ACTAACAGGCTGGTACCTAGCATTAGATTCCAAGTTGCCCCCCAACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAGGCTGGTACCTAGCATTAGATTCCAAGTTGCCCCCCAACAAAA  350

seq1  CCTGAGCCTAGCTCCAGTCTCTAGGCTAATCACCCCTCAAAAAAAGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCCTAGCTCCAGTCTCTAGGCTAATCACCCCTCAAAAAAAGCCCC  400

seq1  ACCATTTTCAGGTTACACCCTCAACAAGACCAGTGTCTCTGGGTTAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTCAGGTTACACCCTCAACAAGACCAGTGTCTCTGGGTTAGTCT  450

seq1  TCCAACAAACCTGCACCCCCAGGTTACAAACCTACCTCCTGCCAAATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAAACCTGCACCCCCAGGTTACAAACCTACCTCCTGCCAAATAAC  500

seq1  CACAAATGCAGAGGAGAGCAGAAGTTAAGTTTGTGATATGTCTCCCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGCAGAGGAGAGCAGAAGTTAAGTTTGTGATATGTCTCCCAGCA  550

seq1  CCAGCCAATCATGTTCAAGGCCACAGGAGCTTTCCAATTAGATGCTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAATCATGTTCAAGGCCACAGGAGCTTTCCAATTAGATGCTTGAA  600

seq1  CACATATACTCCCTGCTTGCTGCTTACTATAAAGCCTTGCCCCCAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACTCCCTGCTTGCTGCTTACTATAAAGCCTTGCCCCCAATAAA  650

seq1  CATTCAGGGCAAGGAGAGAATGCTTTCCCTGGGACATACCTTTGCAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGGCAAGGAGAGAATGCTTTCCCTGGGACATACCTTTGCAACTT  700

seq1  TGGGGAAGTAACTCAAATAGAAGAAACGTGTGTCAAGAAACACACGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGTAACTCAAATAGAAGAAACGTGTGTCAAGAAACACACGCCAA  750

seq1  AACCATTCTGCATGATGGCGGTGGGTTGGAGGGGATTGGGGGAAGCTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCTGCATGATGGCGGTGGGTTGGAGGGGATTGGGGGAAGCTAGC  800

seq1  TCAAATAGAATAAAGACCCTGC-TTTGAGTTGCATCCCTGTCTG-TTTTG  848
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  TCAAATAGAATAAAGACCCTGCTTTTGAGTTGCATCCCTGTCTGTTTTTG  850

seq1  GGGGAGTCACTAACATTTTCCTGGCACAACAC-TACATCTCTAGCCCCAG  897
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  GGGGAGTCACTAACATTTTCCTGGCACAACACTTACATCTCTAG-CCCAG  899

seq1  AGCCAAGAGACTGTTAACAAAAGTTCAAGGAAAACACAAGAGACTTAATG  947
      |||||||||||||||||||||||||| ||||| |||| ||||||||||||
seq2  AGCCAAGAGACTGTTAACAAAAGTTCTAGGAATACAC-AGAGACTTAATG  948

seq1  GTT-CACC-TTTACTGACAAC-TAGACTGGCTT-GAGAATAACCTAGAAG  993
      ||| |||| |||||||||||| |||||| |||| || | || |||  |||
seq2  GTTCCACCTTTTACTGACAACTTAGACTTGCTTGGAAATTACCCTGCAAG  998

seq1  ACTCATCTCTG-CTGGGGCATTTC-TATACA  1022
      ||||||||||| |||||||||||| ||||||
seq2  ACTCATCTCTGCCTGGGGCATTTCTTATACA  1029

seq1: chr19_24263546_24263724
seq2: B6Ng01-340G08.g_72_250 (reverse)

seq1  CCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  CTGGCACAAGCCACTATCAGAAGGAAGCCTCTTTCTTTTTTTGTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACAAGCCACTATCAGAAGGAAGCCTCTTTCTTTTTTTGTTTTGTT  100

seq1  TGCCTGTTCATTTGTTGTTGTTTCCTGGGAGTTGTGATTTTTGGACAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTCATTTGTTGTTGTTTCCTGGGAGTTGTGATTTTTGGACAGTG  150

seq1  AGTTTCACGATGTAGCTCTGGCTGGCCTG  179
      |||||||||||||||||||||||||||||
seq2  AGTTTCACGATGTAGCTCTGGCTGGCCTG  179