BAC Information

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BAC

Clone NameB6Ng01-340O05
Chromosome19 (Build37)
Map Location 15,947,698 - 16,097,309
singlet/doubletdoublet
Overlap genePsat1, LOC100041424, Cep78, LOC100042048
Upstream geneEG433225, EG635497, Pomc-ps1, LOC667482
Downstream geneGnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340O05.bB6Ng01-340O05.g
ACCGA124441GA124442
length1,0921,199
definitionB6Ng01-340O05.b B6Ng01-340O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,947,698 - 15,948,792)(16,096,097 - 16,097,309)
sequence
gaattccagttggccctgctcccaagcagccttttaacagagatgtctaa
ttgatctttattgagcagaaccttcccttctgcttataaacgaaatgatc
gctcttccctctggttctatctggagaagttaatagcctcggttttctct
tacagcagagcaacttaatgaccgggagactatcataaatagagtttatt
gtccaaaatacaaggcacagtctcatcagcctgccccattgagaatgcct
tgtttgcagatgttgacttttcacggttctcccagccaccacgtgtgctg
ttctcatggatgaacgtctgctggccgattaacaaacaaatgctccctgc
gagacaatctatagggtttttgtttttgttgttgttgttgttgtttttct
cccagagttgccccaccccaaaggatgctgtaccaagcaccagtgtgatc
ctctccagcaacagcttccaatgaggccagagaatatctaagacagttca
ctctgtgggttgcacacaaatgttccgtgtgcacattggatcgttccatg
cttccaagccccaggctcaccaggttctatcagcaagccactgcctcata
attagtatgagcctcttgcccatgcctcactctgaggaaggttttaagag
actctggataaagtgctgacccaaagagtggctgaacggaagaagagttc
taagctccctgagcacatttgtagaggattttatcgatcttagcattact
tcctgcaatagacttcaaacccaaccaagaggaacaaatgttccacagta
ctgctagggaaggtgaggttaagtgtttctactgacatacttgagggggt
gggctttcctgtcacctagaggatgggacttgatgttacagacagttctg
cctcaggatgtgtcctagtcatggacaaggctctgccttctagtttttgt
tcttgcctccaggccctgtttacttcctccagttttgctcatattaagaa
atacagacaccatagctatattagtataagcaacactagaactagccata
ttttaaaaggtctagcatttctaaacaccaagccacattttt

gaattctccttctaattctgaggccagaagagagagcacagaagctcaaa
aatgcccatctgtgggatgtgaggagagcccggcgtgaggggaagggcta
agcgagagaggattggacagaacaaaacaactaccataaaaccagtgtgc
taggctcagccaagttcccacagctgttccagaagcttccgtagaaaaca
gtgcaggaacatgacttgttatagaaaatgttgctgtggtgcaggctctg
agtatccctcacttaccttcatagacatcaacggataccccagtgtcttc
cgtttctgatggacaaacggcactgcgtacaacccataaagactgtatag
gactagccgttctgtcttgtttactcactgacaaaaataccgctgctgca
tacagatccaaatacttcggtatggttgagtgcttttctgtgctcatgag
cgcctggggcctgtctgttgtgggaggcctgatcatatttctactagaaa
gcagcaaaaggaaggcagatcctcccagtgtctcctcccactaccaccac
aggagggattcgataaatactttaagcaaactgagtggtaggcaggaacg
tgcatagctgcacattttgttttagggacttcagatgtgcctggtgccct
cacctcctcacctcacaagagcttctttgatcttaggaaatagcaatctg
gaagtaaactccttctagccctcagcggggctgctgcaagtctacccgag
gctctgatggtgaagtagaagggaggagggacatagaaaaagaccattta
gaaaagaactagctctggctatggtctctacggattctctctcccctccg
tttgaggatttcagctaatgtatcccatggggtcctgggagcctcttgct
ttcctggcatctgggactttctggtggctaccctcagttcctcatccccc
ccacggctacacgcctctgttccatttcctgaccctcagtacatcttccc
tgtcttctaccaacacctgatcttgccccatttttctcttccccatcttc
tctcccttccagataactcttctcctattacttctgtgatatatttttcc
cttctagtaagattgaagcatcacacttggactccgtcttctgagcctca
tatgtctgtgagtgatcggcatctgaacttttcaaggctggcctcccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15947698_15948792
seq2: B6Ng01-340O05.b_50_1141

seq1  GAATTCCAGTTGGCCCTGCTCCCAAGCAGCCTTTTAACAGAGATGTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTGGCCCTGCTCCCAAGCAGCCTTTTAACAGAGATGTCTAA  50

seq1  TTGATCTTTATTGAGCAGAACCTTCCCTTCTGCTTATAAACGAAATGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTTATTGAGCAGAACCTTCCCTTCTGCTTATAAACGAAATGATC  100

seq1  GCTCTTCCCTCTGGTTCTATCTGGAGAAGTTAATAGCCTCGGTTTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCCTCTGGTTCTATCTGGAGAAGTTAATAGCCTCGGTTTTCTCT  150

seq1  TACAGCAGAGCAACTTAATGACCGGGAGACTATCATAAATAGAGTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGAGCAACTTAATGACCGGGAGACTATCATAAATAGAGTTTATT  200

seq1  GTCCAAAATACAAGGCACAGTCTCATCAGCCTGCCCCATTGAGAATGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAATACAAGGCACAGTCTCATCAGCCTGCCCCATTGAGAATGCCT  250

seq1  TGTTTGCAGATGTTGACTTTTCACGGTTCTCCCAGCCACCACGTGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCAGATGTTGACTTTTCACGGTTCTCCCAGCCACCACGTGTGCTG  300

seq1  TTCTCATGGATGAACGTCTGCTGGCCGATTAACAAACAAATGCTCCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGGATGAACGTCTGCTGGCCGATTAACAAACAAATGCTCCCTGC  350

seq1  GAGACAATCTATAGGGTTTTTGTTTTTGTTGTTGTTGTTGTTGTTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATCTATAGGGTTTTTGTTTTTGTTGTTGTTGTTGTTGTTTTTCT  400

seq1  CCCAGAGTTGCCCCACCCCAAAGGATGCTGTACCAAGCACCAGTGTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTTGCCCCACCCCAAAGGATGCTGTACCAAGCACCAGTGTGATC  450

seq1  CTCTCCAGCAACAGCTTCCAATGAGGCCAGAGAATATCTAAGACAGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCAACAGCTTCCAATGAGGCCAGAGAATATCTAAGACAGTTCA  500

seq1  CTCTGTGGGTTGCACACAAATGTTCCGTGTGCACATTGGATCGTTCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGGTTGCACACAAATGTTCCGTGTGCACATTGGATCGTTCCATG  550

seq1  CTTCCAAGCCCCAGGCTCACCAGGTTCTATCAGCAAGCCACTGCCTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGCCCCAGGCTCACCAGGTTCTATCAGCAAGCCACTGCCTCATA  600

seq1  ATTAGTATGAGCCTCTTGCCCATGCCTCACTCTGAGGAAGGTTTTAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATGAGCCTCTTGCCCATGCCTCACTCTGAGGAAGGTTTTAAGAG  650

seq1  ACTCTGGATAAAGTGCTGACCCAAAGAGTGGCTGAACGGAAGAAGAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGATAAAGTGCTGACCCAAAGAGTGGCTGAACGGAAGAAGAGTTC  700

seq1  TAAGCTCCCTGAGCACATTTGTAGAGGATTTTATCGATCTTAGCATTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCCCTGAGCACATTTGTAGAGGATTTTATCGATCTTAGCATTACT  750

seq1  TCCTGCAATAGACTTCAAACCCAACCAAGAGGAACAAATGTTCCACAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAATAGACTTCAAACCCAACCAAGAGGAACAAATGTTCCACAGTA  800

seq1  CTGCTAGGGAAGGTGAGGTTAAGTGTTTCTACTGACATACTTGAGGGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGGGAAGGTGAGGTTAAGTGTTTCTACTGACATACTTGAGGGGGT  850

seq1  GGGCTTTCCTGTCACCTAGAGGATGGGACTTGATGTTACAGACAGTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTCCTGTCACCTAGAGGATGGGACTTGATGTTACAGACAGTTCTG  900

seq1  CCTCAGGATGTGTCCTAGTCATGGACAAGGCTCTGCCTTCTAGTTTTTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTCAGGATGTGTCCTAGTCATGGACAAGGCTCTGCCTTCTAGTTTTTGT  950

seq1  TCTTGCCTCCAGGCCCTGTTTACTTCCTCCAG-TTTGC-CATATTAAGAA  998
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TCTTGCCTCCAGGCCCTGTTTACTTCCTCCAGTTTTGCTCATATTAAGAA  1000

seq1  ATACAGACACCATAGCTATAATTAGTATAAGCCAACACTAGAACCTTAG-  1047
      ||||||||||||||||||| ||||||||||| ||||||||||||  ||| 
seq2  ATACAGACACCATAGCTAT-ATTAGTATAAG-CAACACTAGAAC--TAGC  1046

seq1  CATATTTTAAAAAGGCTAAGCATTCTTAAACACCAAGGCAACATTTTT  1095
      |||||||||||| | || ||||||  |||||||||| || ||||||||
seq2  CATATTTTAAAAGGTCT-AGCATTTCTAAACACCAA-GCCACATTTTT  1092


seq1: chr19_16096097_16097309
seq2: B6Ng01-340O05.g_69_1267 (reverse)

seq1  CTGGGAGCCATGCCTTGAAAAAAGCTCAGAATACCCACGATACAACTCAC  50
      ||||||| |  ||||||  ||||| |||| || |   ||||   ||||||
seq2  CTGGGAGGCCAGCCTTG--AAAAGTTCAG-ATGC---CGAT--CACTCAC  42

seq1  AGACTATATGAAGCTCAAGAAGAAGGAAGACCAAAGTGTGGATGCTTCAA  100
      |||| |||||| |||| |||||| || || || |||||| ||||||||||
seq2  AGAC-ATATGAGGCTC-AGAAGACGG-AGTCC-AAGTGT-GATGCTTCAA  87

seq1  TCCTACTTAGAAGGGGAAAAATA-ATCACAGGAGGTATAGGGAGAGAGGT  149
      || ||| ||||| |||||||||| ||||||| ||  |||||   |||| |
seq2  TCTTAC-TAGAA-GGGAAAAATATATCACAGAAGTAATAGGAGAAGAGTT  135

seq1  AACTGGGAGGGAGAGAAGA-GGGGGAGAGAAAAAGGGGGCAGGATCAGGT  198
      | |||| |||||||||||| |||| ||||||||| |||||| ||||||||
seq2  ATCTGGAAGGGAGAGAAGATGGGGAAGAGAAAAATGGGGCAAGATCAGGT  185

seq1  G-TGGTAGGAGACAGGGGAGATGTACTGAGGGTCAGGAAATGGAACAGAG  247
      | |||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  GTTGGTAGAAGACAGGGAAGATGTACTGAGGGTCAGGAAATGGAACAGAG  235

seq1  GCGTGTAGCCGTGGGGGGGATGAGGAACTGAGGGTAGCCACCAGAAAGTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTAGCCGTGGGGGGGATGAGGAACTGAGGGTAGCCACCAGAAAGTC  285

seq1  CCAGATGCCAGGAAAGCAAGAGGCTCCCAGGACCCCATGGGGATAACATT  347
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  CCAGATGCCAGGAAAGCAAGAGGCTCCCAGGACCCCAT-GGGAT-ACATT  333

seq1  AGCTGAAATCCTC-AACGGAGGGGAGAGAGAATCCGTAGAGACCATAGCC  396
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAATCCTCAAACGGAGGGGAGAGAGAATCCGTAGAGACCATAGCC  383

seq1  AGAGCTAGTTCTTTTCTAAATGGTCTTTTTTCTATGTCCCTCCTCCCTTC  446
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAGCTAGTTCTTTTCTAAATGGTC-TTTTTCTATGTCCCTCCTCCCTTC  432

seq1  TACTTCACCATCAGAGCCTCGGGTAGACTTGCAGCAGCCCCGCTGAGGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCACCATCAGAGCCTCGGGTAGACTTGCAGCAGCCCCGCTGAGGGC  482

seq1  TAGAAGGAGTTTACTTCCAGATTGCTATTTCCTAAGATCAAAGAAGCTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAGTTTACTTCCAGATTGCTATTTCCTAAGATCAAAGAAGCTCT  532

seq1  TGTGAGGTGAGGAGGTGAGGGCACCAGGCACATCTGAAGTCCCTAAAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTGAGGAGGTGAGGGCACCAGGCACATCTGAAGTCCCTAAAACA  582

seq1  AAATGTGCAGCTATGCACGTTCCTGCCTACCACTCAGTTTGCTTAAAGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCAGCTATGCACGTTCCTGCCTACCACTCAGTTTGCTTAAAGTA  632

seq1  TTTATCGAATCCCTCCTGTGGTGGTAGTGGGAGGAGACACTGGGAGGATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCGAATCCCTCCTGTGGTGGTAGTGGGAGGAGACACTGGGAGGATC  682

seq1  TGCCTTCCTTTTGCTGCTTTCTAGTAGAAATATGATCAGGCCTCCCACAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCTTTTGCTGCTTTCTAGTAGAAATATGATCAGGCCTCCCACAA  732

seq1  CAGACAGGCCCCAGGCGCTCATGAGCACAGAAAAGCACTCAACCATACCG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGCCCCAGGCGCTCATGAGCACAGAAAAGCACTCAACCATACCG  782

seq1  AAGTATTTGGATCTGTATGCAGCAGCGGTATTTTTGTCAGTGAGTAAACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTGGATCTGTATGCAGCAGCGGTATTTTTGTCAGTGAGTAAACA  832

seq1  AGACAGAACGGCTAGTCCTATACAGTCTTTATGGGTTGTACGCAGTGCCG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAACGGCTAGTCCTATACAGTCTTTATGGGTTGTACGCAGTGCCG  882

seq1  TTTGTCCATCAGAAACGGAAGACACTGGGGTATCCGTTGATGTCTATGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCATCAGAAACGGAAGACACTGGGGTATCCGTTGATGTCTATGAA  932

seq1  GGTAAGTGAGGGATACTCAGAGCCTGCACCACAGCAACATTTTCTATAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTGAGGGATACTCAGAGCCTGCACCACAGCAACATTTTCTATAAC  982

seq1  AAGTCATGTTCCTGCACTGTTTTCTACGGAAGCTTCTGGAACAGCTGTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGTTCCTGCACTGTTTTCTACGGAAGCTTCTGGAACAGCTGTGG  1032

seq1  GAACTTGGCTGAGCCTAGCACACTGGTTTTATGGTAGTTGTTTTGTTCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGGCTGAGCCTAGCACACTGGTTTTATGGTAGTTGTTTTGTTCTG  1082

seq1  TCCAATCCTCTCTCGCTTAGCCCTTCCCCTCACGCCGGGCTCTCCTCACA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCCTCTCTCGCTTAGCCCTTCCCCTCACGCCGGGCTCTCCTCACA  1132

seq1  TCCCACAGATGGGCATTTTTGAGCTTCTGTGCTCTCTCTTCTGGCCTCAG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGATGGGCATTTTTGAGCTTCTGTGCTCTCTCTTCTGGCCTCAG  1182

seq1  AATTAGAAGGAGAATTC  1213
      |||||||||||||||||
seq2  AATTAGAAGGAGAATTC  1199


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