BAC Information

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BAC

Clone NameB6Ng01-341E24
Chromosome19 (Build37)
Map Location 35,934,646 - 35,935,804
singlet/doubletsinglet
Overlap geneA830019P07Rik
Upstream genePank1, Mphosph1, LOC383464, LOC100042292
Downstream geneHtr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341E24.bB6Ng01-341E24.g
ACCGA124729GA124730
length6381,133
definitionB6Ng01-341E24.b B6Ng01-341E24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaagttctgtacataatttactttgtatcataacttgtatttac
caacctaaaaatgtcttcttagatcttaaattattattttaaatataaaa
caacttaagcttcattgtgagactataactatctagtcttcaacccacaa
gagacctgagaagtataaatattacttgagtaaactgggagtacagagca
aacaccttccaaaattatagaaatggcagaagtttctggctacttgaatt
gtcacccaaggttcttctgtgtcattggagcatcatctttggccttctgg
cccagtatatccaacagacttttctgtgaagcaggaattatgaagtactt
gcccatcttgtccttaaaaagcttggcagttgacttactccatgtcctgc
ttgtccacagcttagaaagcatgatgtctgtacttgaggtaagggcatgt
tcttccccagtggctagcttgccacatttgtagcactccatatggatgtt
actcaattctcattgacgtggagtgggggtgtgtggatttagatttttca
gaatctactttaataagggttcttaaacacttcaacctcccttctaaacc
tactgaccagaggtaggagagaaaagatggttaatagg
gaattcttaaccttaaaaaactagggctgcaaaaaatatctcaaaaaacc
taaggggtagagaaatcatgaaggtaggggtttagaaacagatagctttg
tgaaaggagagttagaagcaggagacctaagatggaatttagaacaaaat
ggaactgatgaaaggccaaagtaattaaacaaataaaagatgtcccctac
ttaacaaaaacatctgcaaattgaaaggctcttctctgtcaaatcaaaaa
taaaaattcaacataccttagtaaagttacaatcacctaaaacattttaa
aaaccttaaaggcacaaagattgtacacacattgctctcaagtgaataaa
tataaaacaggcattttccctaacagaagttggaaaaatagtagaataaa
atctatagtttaaagtgtaaaacttaattctttagcccatcaagatatga
gcattctttcgttgataatatacaagataatagatagtaaatacagtcaa
aggaaaagaactggacgcattactcagacacaagctaaacaaaaaaaaat
tcagtatggaaaatgagaagacagaaatctcaacaactgaatgtgattaa
tttgtacatgtaaaatgctaaacacatccatagacaaagtaacagtgata
atttgtcaaaaactgcttagtactaagagttaaaatgtacttacactagc
aaaaatatgttataacatacaacaattactgttaagatgatttaggggtt
gtcattgggagggtacaataaatttttaatggaagaaaggaaagagagaa
tgtgatggctccaacaagctttatcatgtaaagtgggactgccaagggaa
atgggttacccaaccatgcgtgcactgactatgagaaatgactgacttta
tttccacaaattttgaagcagatttcaggaaaccactaatataagggaaa
tgatagcagacatccaattgcaagagaaacaatagataatatcatcaagc
agcagcttttagagcaacacaaatagtagaaaataggttataaatcaaga
tggtctaactaaatcattcttggatggtgaacgatggatctctataatga
ggaccacggctacatttaatgtaacttttctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35934646_35935804
seq2: B6Ng01-341E24.g_65_1197

seq1  GAATTCTTAACCTTAAAAAACTAGGGCTGCAAAAAATATCTCAAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACCTTAAAAAACTAGGGCTGCAAAAAATATCTCAAAAAACC  50

seq1  TAAGGGGTAGAGAAATCATGAAGGTAGGGGTTTAGAAACAGATAGCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGTAGAGAAATCATGAAGGTAGGGGTTTAGAAACAGATAGCTTTG  100

seq1  TGAAAGGAGAGTTAGAAGCAGGAGACCTAAGATGGAATTTAGAACAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAGAGTTAGAAGCAGGAGACCTAAGATGGAATTTAGAACAAAAT  150

seq1  GGAACTGATGAAAGGCCAAAGTAATTAAACAAATAAAAGATGTCCCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGATGAAAGGCCAAAGTAATTAAACAAATAAAAGATGTCCCCTAC  200

seq1  TTAACAAAAACATCTGCAAATTGAAAGGCTCTTCTCTGTCAAATCAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAAACATCTGCAAATTGAAAGGCTCTTCTCTGTCAAATCAAAAA  250

seq1  TAAAAATTCAACATACCTTAGTAAAGTTACAATCACCTAAAACATTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTCAACATACCTTAGTAAAGTTACAATCACCTAAAACATTTTAA  300

seq1  AAACCTTAAAGGCACAAAGATTGTACACACATTGCTCTCAAGTGAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTAAAGGCACAAAGATTGTACACACATTGCTCTCAAGTGAATAAA  350

seq1  TATAAAACAGGCATTTTCCCTAACAGAAGTTGGAAAAATAGTAGAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACAGGCATTTTCCCTAACAGAAGTTGGAAAAATAGTAGAATAAA  400

seq1  ATCTATAGTTTAAAGTGTAAAACTTAATTCTTTAGCCCATCAAGATATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAGTTTAAAGTGTAAAACTTAATTCTTTAGCCCATCAAGATATGA  450

seq1  GCATTCTTTCGTTGATAATATACAAGATAATAGATAGTAAATACAGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTTCGTTGATAATATACAAGATAATAGATAGTAAATACAGTCAA  500

seq1  AGGAAAAGAACTGGACGCATTACTCAGACACAAGCTAAACAAAAAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAACTGGACGCATTACTCAGACACAAGCTAAACAAAAAAAAAT  550

seq1  TCAGTATGGAAAATGAGAAGACAGAAATCTCAACAACTGAATGTGATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGGAAAATGAGAAGACAGAAATCTCAACAACTGAATGTGATTAA  600

seq1  TTTGTACATGTAAAATGCTAAACACATCCATAGACAAAGTAACAGTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACATGTAAAATGCTAAACACATCCATAGACAAAGTAACAGTGATA  650

seq1  ATTTGTCAAAAACTGCTTAGTACTAAGAGTTAAAATGTACTTACACTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCAAAAACTGCTTAGTACTAAGAGTTAAAATGTACTTACACTAGC  700

seq1  AAAAATATGTTATAACATACAACAATTACTGTTAAGATGATTTAGGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATGTTATAACATACAACAATTACTGTTAAGATGATTTAGGGGTT  750

seq1  GTCATTGGGAGGGTACAATAAATTTTTAATGGAAGAAAGGAAAGAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGGGAGGGTACAATAAATTTTTAATGGAAGAAAGGAAAGAGAGAA  800

seq1  TGTGATGGCTCCAACAAGCTTTATCATGTAAAGTGGGACTGCCAAGGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGCTCCAACAAGCTTTATCATGTAAAGTGGGACTGCCAAGGGAA  850

seq1  ATGGGTTACCCAACCATGCGTGCACTGACTATGAGAAATGACTGACTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTACCCAACCATGCGTGCACTGACTATGAGAAATGACTGACTTTA  900

seq1  -TTCCACAAATTTTGAAGCAGAATTCAGGGAAACCACTAATATAAGGGAA  949
       ||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  TTTCCACAAATTTTGAAGCAGATTTCA-GGAAACCACTAATATAAGGGAA  949

seq1  ATGATAGCAGAACATCCAAATTTGCAAGAGAAAACAAATAGAATAAATAT  999
      |||||||||| ||||||||  ||||||||||||   ||||||   |||||
seq2  ATGATAGCAG-ACATCCAA--TTGCAAGAGAAA--CAATAGA--TAATAT  992

seq1  CCATCAAGCCAGCAAGCTTTTAAGAGCAAACACCAAAATAGTAGAAAAAT  1049
       ||||||| |||| ||||||| ||||| |||||  ||||||||| |||||
seq2  -CATCAAG-CAGC-AGCTTTT-AGAGC-AACAC--AAATAGTAG-AAAAT  1034

seq1  AGTTATTAAATCCAAAGAATGTCTAAATTAAATCATTCCTTGAATGTGAA  1099
      || |  ||||||  ||||  |||| || |||||||||| | ||  |||||
seq2  AGGTTATAAATC--AAGATGGTCT-AACTAAATCATTCTTGGATGGTGAA  1081

seq1  CAGATAGGATTCTCCTATTAAAATGAGGACCACCGGGCTACATTAAATGT  1149
      | ||| ||| ||||    || ||||||||||||  ||||||||| |||||
seq2  C-GAT-GGA-TCTC----TATAATGAGGACCAC--GGCTACATTTAATGT  1122

seq1  -ACTTTTCTCA  1159
       ||||||||||
seq2  AACTTTTCTCA  1133