BAC Information

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BAC

Clone NameB6Ng01-341J15
Chromosome19 (Build37)
Map Location 19,924,645 - 20,069,285
singlet/doubletdoublet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341J15.bB6Ng01-341J15.g
ACCGA124938GA124939
length1,1511,186
definitionB6Ng01-341J15.b B6Ng01-341J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,924,645 - 19,925,806)(20,068,109 - 20,069,285)
sequence
gaattctttcatgaacttatataacagtttaaactacaaaaccaattatg
attacatccattttcatgactccagtatcctttacccacattcagttctt
tctcattacttaatatttatcctttctcatagtctttttacatgtgataa
tatgtaccttaggaagactaatattaaggcatccttaatattacaggcag
aaatattccaggggtttgctgagtagccagtcctaccagttagttggttg
taggttcaagatataccctgtctcaaaaataagatggagagcaattgaaa
gagagaatgacttctgacctttatataattaaatatgtataatttaactt
ttcctgagaaagcagaaatatttatacacctcagaaaggggaccaatagc
aaagtatattctactaaagtccaacttgggggagttaatgaatttattgg
atttacagaatgtgggtgaggttaaagcgttgtgagtgacccaccaagat
atctttatcacaacaaagacctataccattaaagaggatgccttgagtta
ttttctcaaatcatttgcaagtggtaagtgcaagagaagaaaatgtctta
ggtcttgggggacaatcccatcactttcttcttctttatctgctcaaagg
ggtattgattgttacatgaccatattcttattctttaagtacagcactaa
ctatactattaaaatcatctttttaaaagtttacttttctctcatgtatt
acatcctaaccacactttcctgtagctccatttcgccaatttctctccca
gccccaccttcctctatcccgggtctatgcttcctctgtttaacttcaga
aaagagcaggtattcaagggctatcaaccagacacaacttacaacaagac
taggcacataatactatgtttatttagcagaaaaatggtattagttgtcc
caaagggcctaatacctatctaacgacatgtcctgtctcctactttgtga
tagttgggattaaatctaaaaagaaaaaaaaaaaactggcttaatctaac
tttaaagtgttttgttactctcagatggtgcatgcagaatgccacgaagg
atatgatacaacacttttgaacctctggtacatgtataaatgtgtgtatg
a

gaattctcagagaagatggtaattaatgtaactactaataccatatgtgg
tgatttgccttcatgaccaaaacaactaaaaatataaagcaatggctgtc
tcaaaagcttaaattgctttctctgttggatcatattagggtctcagaag
taccttagctttagattgaattgttctaatgaaaatttctacctaacaca
gaatttctaagtaactactgtttagtcccttggacggtttttttatggca
tgttagtgatggcattctatcatcaagttaatatttattgattgatatta
aattctgatttgccaatgcatattggctatatgcattatagatgacctat
taagcatgggcttatgtataaatatacacacatatgtgcaaccatgcctc
aaacatatacaactctcttaaaatagcaaaaggatattagaaagtttgct
aagcacaatgggaaaaaaagcaagaaaatagactatagggtctatattct
atttttgcactccacaaagttgtaaaataagtatgtgatttttttttctc
tgctattagatttagaacaggaagaatgcctgttctttacctatgttagg
aaaacagatatgcaatgaggaagtgaaaatcatcctcaccaatgtagtgt
ctgtgactacaaagaatggttaaagtttgtagtgttagtggtaccgtgag
acaaatggggatgactgttaagtagccacactatcttcaaccactttttt
tctagccaaaaaagaaaaataaatgtatttcacattgtaaactgctaaac
ttctgtgtcatcatttgcttcgcaaattgtgtctttagcttttatacatt
catataaagttatgcatggcttaagtgatgtagtaaatagttaaaacatg
aaagctcctgcctctctggttgtaaagtaccactagatttcagcacactt
ggcacatggataatgcttcagagccattcaagtctgaaacagcttcggtg
gtaccatttaagcttgaggtttattggcagaacaggatacgactaaatct
attttggcttagctacctattactcaatatttctctccctccgcctgcat
tccaaccttccattaacaaactgttatatgaatacacacacattatattt
ataagtttaattttgctgtgttggcatgaacctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19924645_19925806
seq2: B6Ng01-341J15.b_43_1193

seq1  GAATTCTTTCATGAACTTATATAACAGTTTAAACTACAAAACCAATTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATGAACTTATATAACAGTTTAAACTACAAAACCAATTATG  50

seq1  ATTACATCCATTTTCATGACTCCAGTATCCTTTACCCACATTCAGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCCATTTTCATGACTCCAGTATCCTTTACCCACATTCAGTTCTT  100

seq1  TCTCATTACTTAATATTTATCCTTTCTCATAGTCTTTTTACATGTGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTACTTAATATTTATCCTTTCTCATAGTCTTTTTACATGTGATAA  150

seq1  TATGTACCTTAGGAAGACTAATATTAAGGCATCCTTAATATTACAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACCTTAGGAAGACTAATATTAAGGCATCCTTAATATTACAGGCAG  200

seq1  AAATATTCCAGGGGTTTGCTGAGTAGCCAGTCCTACCAGTTAGTTGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCCAGGGGTTTGCTGAGTAGCCAGTCCTACCAGTTAGTTGGTTG  250

seq1  TAGGTTCAAGATATACCCTGTCTCAAAAATAAGATGGAGAGCAATTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCAAGATATACCCTGTCTCAAAAATAAGATGGAGAGCAATTGAAA  300

seq1  GAGAGAATGACTTCTGACCTTTATATAATTAAATATGTATAATTTAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATGACTTCTGACCTTTATATAATTAAATATGTATAATTTAACTT  350

seq1  TTCCTGAGAAAGCAGAAATATTTATACACCTCAGAAAGGGGACCAATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGAAAGCAGAAATATTTATACACCTCAGAAAGGGGACCAATAGC  400

seq1  AAAGTATATTCTACTAAAGTCCAACTTGGGGGAGTTAATGAATTTATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATATTCTACTAAAGTCCAACTTGGGGGAGTTAATGAATTTATTGG  450

seq1  ATTTACAGAATGTGGGTGAGGTTAAAGCGTTGTGAGTGACCCACCAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGAATGTGGGTGAGGTTAAAGCGTTGTGAGTGACCCACCAAGAT  500

seq1  ATCTTTATCACAACAAAGACCTATACCATTAAAGAGGATGCCTTGAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATCACAACAAAGACCTATACCATTAAAGAGGATGCCTTGAGTTA  550

seq1  TTTTCTCAAATCATTTGCAAGTGGTAAGTGCAAGAGAAGAAAATGTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAAATCATTTGCAAGTGGTAAGTGCAAGAGAAGAAAATGTCTTA  600

seq1  GGTCTTGGGGGACAATCCCATCACTTTCTTCTTCTTTATCTGCTCAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGGGGACAATCCCATCACTTTCTTCTTCTTTATCTGCTCAAAGG  650

seq1  GGTATTGATTGTTACATGACCATATTCTTATTCTTTAAGTACAGCACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGATTGTTACATGACCATATTCTTATTCTTTAAGTACAGCACTAA  700

seq1  CTATACTATTAAAATCATCTTTTTAAAAGTTTACTTTTCTCTCATGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTATTAAAATCATCTTTTTAAAAGTTTACTTTTCTCTCATGTATT  750

seq1  ACATCCTAACCACACTTTCCTGTAGCTCCATTTCGCCAATTTCTCTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTAACCACACTTTCCTGTAGCTCCATTTCGCCAATTTCTCTCCCA  800

seq1  GCCCCACCTTCCTCTATCCCGGGTCTATGCTTCCTCTGTTTAACTTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCTTCCTCTATCCCGGGTCTATGCTTCCTCTGTTTAACTTCAGA  850

seq1  AAAGAGCAGGTATTCAAGGGCTATCAACCAGACACAACTTACAACAAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAGGTATTCAAGGGCTATCAACCAGACACAACTTACAACAAGAC  900

seq1  TAGGCACATAATACTATGTTTATTTAGCAGAAAAATGGTATTAGTTGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACATAATACTATGTTTATTTAGCAGAAAAATGGTATTAGTTGTCC  950

seq1  CAAAGGGCCTAATACCTATCTAACGACATGGTCCTGTCTCCTACTTTGTG  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAAGGGCCTAATACCTATCTAACGACAT-GTCCTGTCTCCTACTTTGTG  999

seq1  ATAGTTGGGATTAAATCTAAAAAGAAAAAAAAAAAAACTGGCCTTAAATC  1050
      |||||||||||||||||||||||| |||||||||||||||||  | ||||
seq2  ATAGTTGGGATTAAATCTAAAAAG-AAAAAAAAAAAACTGGC--TTAATC  1046

seq1  TAACTTTAAAGTGTGTGGTTACTCTCAGAATGTGCATGGCAGTATTGCAC  1100
      |||||||||||||| | ||||||||||||  |||||| |||| ||  |||
seq2  TAACTTTAAAGTGTTTTGTTACTCTCAGATGGTGCAT-GCAGAATGCCAC  1095

seq1  GAGGGATAATGATACAACACTTTTTTTTAAACCTCTGGTAACATGTATAA  1150
      || |||| ||||||||||||    |||| |||||||||| ||||||||||
seq2  GAAGGAT-ATGATACAACAC----TTTTGAACCTCTGGT-ACATGTATAA  1139

seq1  CATGTGTG-ATGA  1162
       ||||||| ||||
seq2  -ATGTGTGTATGA  1151


seq1: chr19_20068109_20069285
seq2: B6Ng01-341J15.g_67_1252 (reverse)

seq1  AAAAGTTTCATTGCCAACACAGGAAAAAATATAAAC-TATAAATATA---  46
      ||||| |||| ||||||||||| ||||    ||||| ||||||||||   
seq2  AAAAGGTTCA-TGCCAACACAGCAAAA---TTAAACTTATAAATATAATG  46

seq1  TGTGTGTA-TCATAT-ACAGTTTGTTAATTGAA-GTGTGAATGCA-GCGG  92
      |||||||| |||||| ||||||||||||| ||| ||  ||||||| ||||
seq2  TGTGTGTATTCATATAACAGTTTGTTAATGGAAGGTTGGAATGCAGGCGG  96

seq1  AGAGAG---AATA-TGAGTAATAGGTAGCTTAAGCCAAAATTAGA-TTAG  137
      || |||   |||| ||||||||||||||| |||||||||| |||| ||||
seq2  AGGGAGAGAAATATTGAGTAATAGGTAGC-TAAGCCAAAA-TAGATTTAG  144

seq1  TCGTATCCCTGTTCTGCCAATATACCTCAAGCTTAAATGGTACCACCGAA  187
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  TCGTAT-CCTGTTCTGCCAATAAACCTCAAGCTTAAATGGTACCACCGAA  193

seq1  GCTGTTTCAGACTTGAATGGCTCTGAAGCATTATCCATGTGCCAAGTGTG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCAGACTTGAATGGCTCTGAAGCATTATCCATGTGCCAAGTGTG  243

seq1  CTGAAATCTAGTGGTACTTTACAACCAGAGAGGCAGGAGCTTTCATGTTT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCTAGTGGTACTTTACAACCAGAGAGGCAGGAGCTTTCATGTTT  293

seq1  TAACTATTTACTACATCACTTAAGCCATGCATAACTTTATATGAATGTAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTTACTACATCACTTAAGCCATGCATAACTTTATATGAATGTAT  343

seq1  AAAAGCTAAAGACACAATTTGCGAAGCAAATGATGACA-GGAAG-TTAGC  385
      ||||||||||||||||||||||||||||||||||||||  |||| |||||
seq2  AAAAGCTAAAGACACAATTTGCGAAGCAAATGATGACACAGAAGTTTAGC  393

seq1  AGTTTACAATGTGAAATACATTTATTTTTCTTTTTTGGCTAG-AAAAAAG  434
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTTTACAATGTGAAATACATTTATTTTTCTTTTTTGGCTAGAAAAAAAG  443

seq1  TGGTTGAAGATAGTGTGGCTACTTAACAGTCATCCCCATTTGTCTCACGG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAAGATAGTGTGGCTACTTAACAGTCATCCCCATTTGTCTCACGG  493

seq1  TACCACTAACACTACAAACTTTAACCATTCTTTGTAGTCACAGACACTAC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTAACACTACAAACTTTAACCATTCTTTGTAGTCACAGACACTAC  543

seq1  ATTGGTGAGGATGATTTTCACTTCCTCATTGCATATCTGTTTTCCTAACA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGAGGATGATTTTCACTTCCTCATTGCATATCTGTTTTCCTAACA  593

seq1  TAGGTAAAGAACAGGCATTCTTCCTGTTCTAAATCTAATAGCAGAGAAAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAAGAACAGGCATTCTTCCTGTTCTAAATCTAATAGCAGAGAAAA  643

seq1  AAAAATCACATACTTATTTTACAACTTTGTGGAGTGCAAAAATAGAATAT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCACATACTTATTTTACAACTTTGTGGAGTGCAAAAATAGAATAT  693

seq1  AGACCCTATAGTCTATTTTCTTGCTTTTTTTCCCATTGTGCTTAGCAAAC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTATAGTCTATTTTCTTGCTTTTTTTCCCATTGTGCTTAGCAAAC  743

seq1  TTTCTAATATCCTTTTGCTATTTTAAGAGAGTTGTATATGTTTGAGGCAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATATCCTTTTGCTATTTTAAGAGAGTTGTATATGTTTGAGGCAT  793

seq1  GGTTGCACATATGTGTGTATATTTATACATAAGCCCATGCTTAATAGGTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCACATATGTGTGTATATTTATACATAAGCCCATGCTTAATAGGTC  843

seq1  ATCTATAATGCATATAGCCAATATGCATTGGCAAATCAGAATTTAATATC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAATGCATATAGCCAATATGCATTGGCAAATCAGAATTTAATATC  893

seq1  AATCAATAAATATTAACTTGATGATAGAATGCCATCACTAACATGCCATA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATAAATATTAACTTGATGATAGAATGCCATCACTAACATGCCATA  943

seq1  AAAAAACCGTCCAAGGGACTAAACAGTAGTTACTTAGAAATTCTGTGTTA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCGTCCAAGGGACTAAACAGTAGTTACTTAGAAATTCTGTGTTA  993

seq1  GGTAGAAATTTTCATTAGAACAATTCAATCTAAAGCTAAGGTACTTCTGA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAATTTTCATTAGAACAATTCAATCTAAAGCTAAGGTACTTCTGA  1043

seq1  GACCCTAATATGATCCAACAGAGAAAGCAATTTAAGCTTTTGAGACAGCC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAATATGATCCAACAGAGAAAGCAATTTAAGCTTTTGAGACAGCC  1093

seq1  ATTGCTTTATATTTTTAGTTGTTTTGGTCATGAAGGCAAATCACCACATA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTATATTTTTAGTTGTTTTGGTCATGAAGGCAAATCACCACATA  1143

seq1  TGGTATTAGTAGTTACATTAATTACCATCTTCTCTGAGAATTC  1177
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTAGTAGTTACATTAATTACCATCTTCTCTGAGAATTC  1186


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