BAC Information

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BAC

Clone NameB6Ng01-343D02
Chromosome19 (Build37)
Map Location 10,500,160 - 10,647,273
singlet/doubletdoublet
Overlap geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138
Upstream geneLOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla
Downstream geneCybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343D02.bB6Ng01-343D02.g
ACCGA126036GA126037
length1,0381,093
definitionB6Ng01-343D02.b B6Ng01-343D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,500,160 - 10,501,197)(10,646,180 - 10,647,273)
sequence
gaattcctaggaggaagtcataaatctgccccagagctgaactcccaggc
tgctctggccacagggtaggcttctgtatgtgagtctgcctcctcttttc
ttcccacagagtatgaggaatggctgccctgcctccctagccattactag
gccaactctgtgctggcctggatttctttctgtctccaaaggacagtagt
acctagaacacagaggcagatgttcctagtgtccccctagtgagatggca
gaggggtggcagcagctccctgcccctcccattccaacatgacaggcagt
tatagggccctggggacctgccttcaccacgcagctgccacagttcctgc
agcccactcagaccggcagagaggtcggcccagacagaggtactggggaa
ccagcgagctaggtccagaggtgggtgggcggagccagcctgggaacctc
agggtgggtgaggtggtggcagcgactgcagcagtgacaactccgatgga
ggcctggcgaggtccagccgagcgtgccctgcattggggcctcccagccc
tggccctcggcttctttctcttccactgtgatcccttcacctgcttctcc
tttctctcctctcctccacccgccccaagtttcgaggactccaccctgtc
cacggccactacccttgagtctatccccagctccgcgggagagccgaaat
gccagcgaccccgcacactgatgcggcagcagagcctgcagcagccgctg
agccagaaccagcagggccggcagcccagtcagcccaccaccagccagag
cctgggccagctgcaggcccacgcggcctcggcaccgggctccaaccccc
gggcctatggtcggggtcagctcggcagggcacctcggccggctccaagt
accgggcagctgggggccgcagccgctccaacccaggcagctgggaccac
gtgttggggcagatccgaaaccgaggcctggacatgaatcttcctgtagt
cctccctgagcgggctagcctcccactccccactcagc
gaattcattaaaattcctgactttaaattaggggtgtggctcaagggtag
agctcttccctggccttggttctcagcaccaccatcaaaacagcagaccc
ttggtctctagtcactttttcactttctctggaccaccatgtgggtgtcc
ctggcgtgccacaggaaagcaacagagcagtgtgcaagggtcacggggct
tcctctgtcaggcctgggctctgcttcctggagctcagtatttaagctgt
tgatgtcactaagcctgatgctgaatgcactaaggtgctgagcctgagct
gctgtgggctgaaaggtgagcagagacacttcagagatcattcttgacag
atgaatcccctcgttcagccttagaggagacccctttgaagcaaatctaa
aaaggagcaggaggtggctgagagccagcaagatggccaagcaggttaag
gaatgtcctgccaagcttgacgctctgggtttgatccctgagacccacat
gatggaaggagggacctgactcttggaagttgtcttctatctctgcatgt
atgctattacacacgtattattattattatacacatacatatgtacatac
acacatgcacacatacacacacacacacacattttttaaaaaactatttg
aaaaagagtcttactatatacatagttctggctggcctggaactcactat
gtaggccaggctagcctcagacttagagagatctgcctgcttctgcctct
tgagtgctgtgattaaaagatgtgcaccaccatgcctaattaaaattcta
tttatttattattttatgcatgtgagagtgtttgcctgcatatgtgcatc
atgtgcgtgcctagtgtccacagaggccaggagagagcactggctcccct
gtaactgagttataggaggttgtgtgcatcatatgggtaggtcctaggaa
ctgaacctcggtcagtgtgctctacactcagccattctttccagctcata
gagaaaaaaaaaaatcgaatttgaaagctccctttgagagtaatattact
tggagcttattgagagggagcagtagcatgattttcaaccaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10500160_10501197
seq2: B6Ng01-343D02.b_50_1080

seq1  GAATTCCTAGGAGGAAGTCATAAATCTGCCCCAGAGCTGAACTCCCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGAGGAAGTCATAAATCTGCCCCAGAGCTGAACTCCCAGGC  50

seq1  TGCTCTGGCCACAGGGTAGGCTTCTGTATGTGAGTCTGCCTCCTCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGCCACAGGGTAGGCTTCTGTATGTGAGTCTGCCTCCTCTTTTC  100

seq1  TTCCCACAGAGTATGAGGAATGGCTGCCCTGCCTCCCTAGCCATTACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAGAGTATGAGGAATGGCTGCCCTGCCTCCCTAGCCATTACTAG  150

seq1  GCCAACTCTGTGCTGGCCTGGATTTCTTTCTGTCTCCAAAGGACAGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTCTGTGCTGGCCTGGATTTCTTTCTGTCTCCAAAGGACAGTAGT  200

seq1  ACCTAGAACACAGAGGCAGATGTTCCTAGTGTCCCCCTAGTGAGATGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAACACAGAGGCAGATGTTCCTAGTGTCCCCCTAGTGAGATGGCA  250

seq1  GAGGGGTGGCAGCAGCTCCCTGCCCCTCCCATTCCAACATGACAGGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTGGCAGCAGCTCCCTGCCCCTCCCATTCCAACATGACAGGCAGT  300

seq1  TATAGGGCCCTGGGGACCTGCCTTCACCACGCAGCTGCCACAGTTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGCCCTGGGGACCTGCCTTCACCACGCAGCTGCCACAGTTCCTGC  350

seq1  AGCCCACTCAGACCGGCAGAGAGGTCGGCCCAGACAGAGGTACTGGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACTCAGACCGGCAGAGAGGTCGGCCCAGACAGAGGTACTGGGGAA  400

seq1  CCAGCGAGCTAGGTCCAGAGGTGGGTGGGCGGAGCCAGCCTGGGAACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGAGCTAGGTCCAGAGGTGGGTGGGCGGAGCCAGCCTGGGAACCTC  450

seq1  AGGGTGGGTGAGGTGGTGGCAGCGACTGCAGCAGTGACAACTCCGATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGTGAGGTGGTGGCAGCGACTGCAGCAGTGACAACTCCGATGGA  500

seq1  GGCCTGGCGAGGTCCAGCCGAGCGTGCCCTGCATTGGGGCCTCCCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCGAGGTCCAGCCGAGCGTGCCCTGCATTGGGGCCTCCCAGCCC  550

seq1  TGGCCCTCGGCTTCTTTCTCTTCCACTGTGATCCCTTCACCTGCTTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTCGGCTTCTTTCTCTTCCACTGTGATCCCTTCACCTGCTTCTCC  600

seq1  TTTCTCTCCTCTCCTCCACCCGCCCCAAGTTTCGAGGACTCCACCCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCTCTCCTCCACCCGCCCCAAGTTTCGAGGACTCCACCCTGTC  650

seq1  CACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAAT  700

seq1  GCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTG  750

seq1  AGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAG  800

seq1  CCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCC  850

seq1  GGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAG  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGCCTATGGTCGGGGTCA-GCTCGGCAGGGCACCTCGGCCGGCTCCAAG  899

seq1  TACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCA  949

seq1  CGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCTGT  1000
      |||| |||||||||| |||||||||||| ||||||||||   ||||||||
seq2  CGTGTTGGGGCAGATCCGAAACCGAGGCCTGGACATGAA--TCTTCCTGT  997

seq1  AAGTCCTCCCCTTGAGCGGGCTAGCTCCCCACCTCCCC  1038
       |||||||||  |||||||||||||  |||| ||||||
seq2  -AGTCCTCCC--TGAGCGGGCTAGCCTCCCA-CTCCCC  1031

seq1: chr19_10646180_10647273
seq2: B6Ng01-343D02.g_67_1159 (reverse)

seq1  CTTGGTTGAAAATCATGCTAACCTTGCT-CCTCTTCATAAGCTCCAAGT-  48
      ||||||||||||||||||||    |||| |||||  ||||||||||||| 
seq2  CTTGGTTGAAAATCATGCTA---CTGCTCCCTCTCAATAAGCTCCAAGTA  47

seq1  ATATTACTTCTC-AAGGGAGC-TTCAAATTCGA-TTTTTTTTTTCTCTAT  95
      ||||||| |||| |||||||| ||||||||||| ||||||||||||||||
seq2  ATATTAC-TCTCAAAGGGAGCTTTCAAATTCGATTTTTTTTTTTCTCTAT  96

seq1  GGGCTGGAAAG-ATGGCTGAGTGGTTAAGAGCACACTGACCGAGGTTCAG  144
      | ||||||||| |||||||||||    |||||||||||||||||||||||
seq2  GAGCTGGAAAGAATGGCTGAGTG---TAGAGCACACTGACCGAGGTTCAG  143

seq1  TTCCTAGGACCTACCCATATGATGCACACAACCTCCTATAACTCAGTTAC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGACCTACCCATATGATGCACACAACCTCCTATAACTCAGTTAC  193

seq1  AGGGGAGCCAGTGCTCTCTCCTGGCCTCTGTGGACACTAGGCACGCACAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGCCAGTGCTCTCTCCTGGCCTCTGTGGACACTAGGCACGCACAT  243

seq1  GATGCACATATGCAGGCAAACACTCTCACATGCATAAAATAATAAATAAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACATATGCAGGCAAACACTCTCACATGCATAAAATAATAAATAAA  293

seq1  TAGAATTTTAATTAGGCATGGTGGTGCACATCTTTTAATCACAGCACTCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTTAATTAGGCATGGTGGTGCACATCTTTTAATCACAGCACTCA  343

seq1  AGAGGCAGAAGCAGGCAGATCTCTCTAAGTCTGAGGCTAGCCTGGCCTAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAAGCAGGCAGATCTCTCTAAGTCTGAGGCTAGCCTGGCCTAC  393

seq1  ATAGTGAGTTCCAGGCCAGCCAGAACTATGTATATAGTAAGACTCTTTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGTTCCAGGCCAGCCAGAACTATGTATATAGTAAGACTCTTTTT  443

seq1  CAAATAGTTTTTTAAAAAATGTGTGTGTGTGTGTGTATGTGTGCATGTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTTTTTTAAAAAATGTGTGTGTGTGTGTGTATGTGTGCATGTGT  493

seq1  GTATGTACATATGTATGTGTATAATAATAATAATACGTGTGTAATAGCAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACATATGTATGTGTATAATAATAATAATACGTGTGTAATAGCAT  543

seq1  ACATGCAGAGATAGAAGACAACTTCCAAGAGTCAGGTCCCTCCTTCCATC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGAGATAGAAGACAACTTCCAAGAGTCAGGTCCCTCCTTCCATC  593

seq1  ATGTGGGTCTCAGGGATCAAACCCAGAGCGTCAAGCTTGGCAGGACATTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTCTCAGGGATCAAACCCAGAGCGTCAAGCTTGGCAGGACATTC  643

seq1  CTTAACCTGCTTGGCCATCTTGCTGGCTCTCAGCCACCTCCTGCTCCTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCTGCTTGGCCATCTTGCTGGCTCTCAGCCACCTCCTGCTCCTTT  693

seq1  TTAGATTTGCTTCAAAGGGGTCTCCTCTAAGGCTGAACGAGGGGATTCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTGCTTCAAAGGGGTCTCCTCTAAGGCTGAACGAGGGGATTCAT  743

seq1  CTGTCAAGAATGATCTCTGAAGTGTCTCTGCTCACCTTTCAGCCCACAGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGAATGATCTCTGAAGTGTCTCTGCTCACCTTTCAGCCCACAGC  793

seq1  AGCTCAGGCTCAGCACCTTAGTGCATTCAGCATCAGGCTTAGTGACATCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGCTCAGCACCTTAGTGCATTCAGCATCAGGCTTAGTGACATCA  843

seq1  ACAGCTTAAATACTGAGCTCCAGGAAGCAGAGCCCAGGCCTGACAGAGGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAAATACTGAGCTCCAGGAAGCAGAGCCCAGGCCTGACAGAGGA  893

seq1  AGCCCCGTGACCCTTGCACACTGCTCTGTTGCTTTCCTGTGGCACGCCAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGTGACCCTTGCACACTGCTCTGTTGCTTTCCTGTGGCACGCCAG  943

seq1  GGACACCCACATGGTGGTCCAGAGAAAGTGAAAAAGTGACTAGAGACCAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCCACATGGTGGTCCAGAGAAAGTGAAAAAGTGACTAGAGACCAA  993

seq1  GGGTCTGCTGTTTTGATGGTGGTGCTGAGAACCAAGGCCAGGGAAGAGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGCTGTTTTGATGGTGGTGCTGAGAACCAAGGCCAGGGAAGAGCT  1043

seq1  CTACCCTTGAGCCACACCCCTAATTTAAAGTCAGGAATTTTAATGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTGAGCCACACCCCTAATTTAAAGTCAGGAATTTTAATGAATTC  1093