BAC Information

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BAC

Clone NameB6Ng01-343N19
Chromosome19 (Build37)
Map Location 16,212,867 - 16,214,003
singlet/doubletsinglet
Overlap geneGnaq
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048
Downstream geneE030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343N19.bB6Ng01-343N19.g
ACCGA126525GA126526
length1,2051,135
definitionB6Ng01-343N19.b B6Ng01-343N19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggaagcaattacatttctgtttgcttgaaaaactacaccaga
ataaacctaaccaatgaagtgagcagtctttacaatgaaaactttaaagc
agtgaagaaaaatattacgaaagacacaagaaggtggaaagaccttaagt
gctcttagattggaattgatactgtgtaaatgatctcaatctaaaatcaa
tctatagattgcatgcaatgttcatcacaattccaatgccattattcaat
gaaaaatactcttaaaattcatacggaagcccaagagatccccaggagtc
taagcaatgctgagcaaaaagaataatggcaaagagagtgtcttcaacaa
atggtgatgggaaagttgggtacccacatgtagaaggatgaacctagatc
cacatctctcacaaaaccaaccatcttgatataagaccccctaactgaaa
ctgctagaggaagaattaggaaaacatttgatgattcaggcacaggcaag
tgtcctcctgagtgggactccagttgcttgggaagtaaatccatggacat
ccaacaaaggaaagaagagtggagaggcgacctatgaaacagaagacaat
ttttgccatgcatacgtctgatagagaattaacatctcaaatatacaaga
aactcaaaatactgaataagaaatcaaacaacccaacaaagaaatgaact
tcagagatggatagttctcaaaagatgatgtacagctggctaattaacat
gaaaaacaaacccgctcaaccttatgagtcaccagagaaagtcaatacaa
aaggcaaataacagtaaatgctggcaagtatggactcaaaaggaaacaca
caggcattgtcggtggtaatgtcagtagtctagcatctgtagaactcact
gtagaagcttctggaaactagcactagatccacaagatggctgagcttca
cactcttgggtatttcctgaaggactccaagacagcacatcacagatgct
gtctatcagatcatgcaacactgtcacagtattacatcatagaccccacc
taggtcacacatcagagtggagaggagaaataccgtacttgatataccac
agtgagttggtttttagcagtgaaaaattaattgtgtgtaacttagcagt
ccgaagaacagagtcaatgtgttctctctcgtgtgggaatcttatatatt
ttagt
gaattccagaagggctcctacggtgccctataacatgtttggccttttct
tttgtatgaagaagcaccaaaaaaaaccagccagcaaggcaacacagaca
acaaccaagaaaaaacaagctggagacttgctctgtccttcctgttggca
cataactaagcagtgtttcacgtagcacataactgcacacagaagtgctt
aatatttcattatgtggacaactaggaggaaattctggaggaaaagttat
tttccagtaattggtaagtatttgtttagtcagtggctttgagagatctt
cataatttaacttatggacaatactaattttgttcttaatactgaactat
aaagaggcttaaggtgtagctcactatggactagcacacttgggtcctta
ggttcaatcccctgcacaaaaaaaggaaaaaataaaggcttttagcaaaa
actcagtgctgtcttcagaaatgacacctatgaaggctgaccacagggct
aactaatatgggaaattctgtttggagctcacagtttgtttttctgtata
atgtagattcacaaccactttagactctaattcgtcctgtcagtacgtgt
aggtccttttgccttattgctactcattagataagaaatcagtcagacgt
ctacatatcagtgacataacaaatcaaatgtgatcatgaaatgccctcta
ttacattagctacagctgctgacacagaacagttgtccggatctgagaat
agcttttgctcgtgtcactccattcagcaagagaaaatactctgttcact
gtgcactcagttactgccaccgacggaattaccaacaaccgtacgtcttc
ccttctattgctatttcacacttccctaggattaatttctgcacaacctt
aatgactacctaaagccactgcagagatcctacattttgctgcttcttca
cggcttgcttcttcagccaggaaatggagtttaaatctacgactacaaat
cttatgcatccgcttcaacccagtacaccagacctgcagagacagcccct
gcacacaggtctgcagaataacaacagccccttccgcttctcagagaaac
aattcccaacttgaaatggccttctctctttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16212867_16214003
seq2: B6Ng01-343N19.g_66_1200 (reverse)

seq1  TTTGAAAGAGAGAAGCCATTTTCAGGTTGGGAA-TGTTTCTCCTTGAGAA  49
      ||||||||||||||| |  ||||| |||||||| ||||||||  ||||||
seq2  TTTGAAAGAGAGAAGGCCATTTCAAGTTGGGAATTGTTTCTC--TGAGAA  48

seq1  GGCGGAGGGGCTGTTGTTA-TCTGCAGACCTGTTGTGCAGGGGCTGTCTC  98
      |  | |||||||||||||| |||||||||||| |||||||||||||||| 
seq2  GCGGAAGGGGCTGTTGTTATTCTGCAGACCTG-TGTGCAGGGGCTGTCT-  96

seq1  CTGCAGGTCTGGTGTACTGGGTTGAGGCGGATGCAT-AGATTTGTAGTCG  147
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  CTGCAGGTCTGGTGTACTGGGTTGAAGCGGATGCATAAGATTTGTAGTCG  146

seq1  TAGATTTAAACTCCCATTTCCTGGCTGAAGAAGCAAGCCGTGAAGAAGCA  197
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAGATTTAAACT-CCATTTCCTGGCTGAAGAAGCAAGCCGTGAAGAAGCA  195

seq1  GCAAAATGTAGGATCTCTGCAGTGGCTTTTAGGTAGTCATTAAGGTTGTG  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCAAAATGTAGGATCTCTGCAGTGGC-TTTAGGTAGTCATTAAGGTTGTG  244

seq1  CAG-AATTAATCCTAGGGAAGTGTGAAATAGCAATAGAAGGGAAGACGTA  296
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTAATCCTAGGGAAGTGTGAAATAGCAATAGAAGGGAAGACGTA  294

seq1  CGGTTGTTGGTAATTCCGTCGGTGGCAGTAACTGAGTGCACAGTGAACAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGTTGGTAATTCCGTCGGTGGCAGTAACTGAGTGCACAGTGAACAG  344

seq1  AGTATTTTCTCTTGCTGAATGGAGTGACACGAGCAAAAGCTATTCTCAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTCTCTTGCTGAATGGAGTGACACGAGCAAAAGCTATTCTCAGA  394

seq1  TCCGGACAACTGTTCTGTGTCAGCAGCTGTAGCTAATGTAATAGAGGGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGACAACTGTTCTGTGTCAGCAGCTGTAGCTAATGTAATAGAGGGCA  444

seq1  TTTCATGATCACATTTGATTTGTTATGTCACTGATATGTAGACGTCTGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATCACATTTGATTTGTTATGTCACTGATATGTAGACGTCTGAC  494

seq1  TGATTTCTTATCTAATGAGTAGCAATAAGGCAAAAGGACCTACACGTACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTTATCTAATGAGTAGCAATAAGGCAAAAGGACCTACACGTACT  544

seq1  GACAGGACGAATTAGAGTCTAAAGTGGTTGTGAATCTACATTATACAGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGACGAATTAGAGTCTAAAGTGGTTGTGAATCTACATTATACAGAA  594

seq1  AAACAAACTGTGAGCTCCAAACAGAATTTCCCATATTAGTTAGCCCTGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACTGTGAGCTCCAAACAGAATTTCCCATATTAGTTAGCCCTGTG  644

seq1  GTCAGCCTTCATAGGTGTCATTTCTGAAGACAGCACTGAGTTTTTGCTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTTCATAGGTGTCATTTCTGAAGACAGCACTGAGTTTTTGCTAA  694

seq1  AAGCCTTTATTTTTTCCTTTTTTTGTGCAGGGGATTGAACCTAAGGACCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTATTTTTTCCTTTTTTTGTGCAGGGGATTGAACCTAAGGACCC  744

seq1  AAGTGTGCTAGTCCATAGTGAGCTACACCTTAAGCCTCTTTATAGTTCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGCTAGTCCATAGTGAGCTACACCTTAAGCCTCTTTATAGTTCAG  794

seq1  TATTAAGAACAAAATTAGTATTGTCCATAAGTTAAATTATGAAGATCTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGAACAAAATTAGTATTGTCCATAAGTTAAATTATGAAGATCTCT  844

seq1  CAAAGCCACTGACTAAACAAATACTTACCAATTACTGGAAAATAACTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCACTGACTAAACAAATACTTACCAATTACTGGAAAATAACTTTT  894

seq1  CCTCCAGAATTTCCTCCTAGTTGTCCACATAATGAAATATTAAGCACTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAATTTCCTCCTAGTTGTCCACATAATGAAATATTAAGCACTTC  944

seq1  TGTGTGCAGTTATGTGCTACGTGAAACACTGCTTAGTTATGTGCCAACAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCAGTTATGTGCTACGTGAAACACTGCTTAGTTATGTGCCAACAG  994

seq1  GAAGGACAGAGCAAGTCTCCAGCTTGTTTTTTCTTGGTTGTTGTCTGTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACAGAGCAAGTCTCCAGCTTGTTTTTTCTTGGTTGTTGTCTGTGT  1044

seq1  TGCCTTGCTGGCTGGTTTTTTTTGGTGCTTCTTCATACAAAAGAAAAGGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCTGGCTGGTTTTTTTTGGTGCTTCTTCATACAAAAGAAAAGGC  1094

seq1  CAAACATGTTATAGGGCACCGTAGGAGCCCTTCTGGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGTTATAGGGCACCGTAGGAGCCCTTCTGGAATTC  1135