BAC Information

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BAC

Clone NameB6Ng01-344I17
Chromosome19 (Build37)
Map Location 45,989,996 - 45,991,217
singlet/doubletsinglet
Overlap gene9130011E15Rik
Upstream gene6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, EG627939
Downstream gene4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344I17.bB6Ng01-344I17.g
ACCGA127002GA127003
length1,235927
definitionB6Ng01-344I17.b B6Ng01-344I17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgccccccacccccaccccgtctcctcttcctgagtgctggaat
tagataattttcacaagcatgctatattctttcccacctgcataacctct
tcaaaagtacaaggagtcaggagctgtctgaggctccctttagagaaggc
tgggtgaaaaaggtacttttactatttttggaggagggtgggaaaaggca
tacttttactatttttgcaacttcgcataagtctataatcacatcaagta
acagtttaaaaaacaaactaaaccaaaagaagcaaacaactaaatgttca
cagataagtaaataacacattgggaagggctgccaacctgccaaagtcat
acctacagcagaattgccagataatgatacatatcaaacaaaccagtttt
tctcttgaagaaaattcagtcctgaactgtgcagtggcggcgcacggtta
atcccagaacacaggaggcagaggcaggtggatttcggagttcaagagta
gcctggtctccagagtgagttccaggacagccagggctacacagagaaac
cctgttttgaaaaaccaaaaacagaaaaaagaaaaaaaattttcagttct
ctgtaacacccacaacaacatagcttccaacaacaggctctcaattccca
gcctcaaattgttcctaaccatgaaggcacaggttgtgccagtaatgaaa
gagccagctggatccggaaaactgtgacgctctttgggtgttcatggttc
ccagtaggtatctgaaaggtcagaccatgtacaatttcccttttgcagag
ctaaatgcttgggatgctatctagcacagcgaagcttaacagattgtttt
gggggctttgggaccttccttcctgcagagaggcaaatgttgcctagtga
tctacatcttagcatagaagtcgggaactctaagttccaaccatgactgt
ttggtctctggctccgtaatcctttgtgagttacttaacccctttgtatc
tctgctcccttcgcccaagaataaggatttaagtaatggctgcttctcgc
cctgaagacacggcatactgaatggggtaaggacttgatcttacagaaca
aattgcctgaaataaaagaatcccagcataaaagctgcctcctaaaccat
gggttccgacctgaaacacatatttatgaagtgcaagcgtgctctccatg
ctccttctcgcctactgtggggagttaaaataagc
gaattccagaagctaggcatgattctgctcagtttttttttgttgttgtt
tgtttgttttgtttttgttttgttttgttttgttttgtttttttgagaca
gggtttctctgtatagccctgactgtcctggaactcactttgtagaccag
gctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgctggg
attaaaggtgtgcgccaccactgcccggcgattctgctcagttttaattc
cagcactcaggaagcagaggtaggaggctatgagttccaggtcaaccaga
gagatatgggaagactgaaacctcaaacactttctgtccttctagagaat
ctcaatttagctccccgaacctaggccaggcagctcacaaccacctattg
ctcctgctccaggagatctgatgcctctgcctctgcagatactgttgtac
actgctgtacatccccacgtggagacacatgcaactacacaaaaaaatcc
aaaagtaataaaagtaaaaaaatccaaaagttgttggcttttcctagata
atgcctctgtgtagccctgactgtcctggaactcactgtgtagaccaagc
tgacctcgaactcacagagagtcacctcacctgtctctctttgccttccc
agtgttgggactaaagtttcatgtgccaacaccacccagataaaaaataa
tttaaaaaatactttatttttcatgtatgttatctatatgagtgctctat
ctgcatgtgtgccagaagagggcatcagatcccattacaggtggttgtga
gccaccatatggttcccgggaaattgaactcaggacctctggaagagcag
tcagtgctcttaactactgagccatctctccagcccccaaaaattcttta
attttttttttttttttttggtttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45989996_45991217
seq2: B6Ng01-344I17.b_48_1282

seq1  GAATTCTGCCCCCCACCCCCACCCCGTCTCCTCTTCCTGAGTGCTGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCCCCACCCCCACCCCGTCTCCTCTTCCTGAGTGCTGGAAT  50

seq1  TAGATAATTTTCACAAGCATGCTATATTCTTTCCCACCTGCATAACCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATTTTCACAAGCATGCTATATTCTTTCCCACCTGCATAACCTCT  100

seq1  TCAAAAGTACAAGGAGTCAGGAGCTGTCTGAGGCTCCCTTTAGAGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTACAAGGAGTCAGGAGCTGTCTGAGGCTCCCTTTAGAGAAGGC  150

seq1  TGGGTGAAAAAGGTACTTTTACTATTTTTGGAGGAGGGTGGGAAAAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAAAAAGGTACTTTTACTATTTTTGGAGGAGGGTGGGAAAAGGCA  200

seq1  TACTTTTACTATTTTTGCAACTTCGCATAAGTCTATAATCACATCAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTACTATTTTTGCAACTTCGCATAAGTCTATAATCACATCAAGTA  250

seq1  ACAGTTTAAAAAACAAACTAAACCAAAAGAAGCAAACAACTAAATGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTAAAAAACAAACTAAACCAAAAGAAGCAAACAACTAAATGTTCA  300

seq1  CAGATAAGTAAATAACACATTGGGAAGGGCTGCCAACCTGCCAAAGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGTAAATAACACATTGGGAAGGGCTGCCAACCTGCCAAAGTCAT  350

seq1  ACCTACAGCAGAATTGCCAGATAATGATACATATCAAACAAACCAGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAGCAGAATTGCCAGATAATGATACATATCAAACAAACCAGTTTT  400

seq1  TCTCTTGAAGAAAATTCAGTCCTGAACTGTGCAGTGGCGGCGCACGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGAAGAAAATTCAGTCCTGAACTGTGCAGTGGCGGCGCACGGTTA  450

seq1  ATCCCAGAACACAGGAGGCAGAGGCAGGTGGATTTCGGAGTTCAAGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAACACAGGAGGCAGAGGCAGGTGGATTTCGGAGTTCAAGAGTA  500

seq1  GCCTGGTCTCCAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTCCAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC  550

seq1  CCTGTTTTGAAAAACCAAAAACAGAAAAAAGAAAAAAAATTTTCAGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTGAAAAACCAAAAACAGAAAAAAGAAAAAAAATTTTCAGTTCT  600

seq1  CTGTAACACCCACAACAACATAGCTTCCAACAACAGGCTCTCAATTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACACCCACAACAACATAGCTTCCAACAACAGGCTCTCAATTCCCA  650

seq1  GCCTCAAATTGTTCCTAACCATGAAGGCACAGGTTGTGCCAGTAATGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAATTGTTCCTAACCATGAAGGCACAGGTTGTGCCAGTAATGAAA  700

seq1  GAGCCAGCTGGATCCGGAAAACTGTGACGCTCTTTGGGTGTTCATGGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCTGGATCCGGAAAACTGTGACGCTCTTTGGGTGTTCATGGTTC  750

seq1  CCAGTAGGTATCTGAAAGGTCAGACCATGTACAATTTCCCTTTTGCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGGTATCTGAAAGGTCAGACCATGTACAATTTCCCTTTTGCAGAG  800

seq1  CTAAATGCTTGGGATGCTATCTAGCACAGCGAAGCTTAACAGATTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGCTTGGGATGCTATCTAGCACAGCGAAGCTTAACAGATTGTTTT  850

seq1  GGGGGCTTTGGGACCTTCCTTCCTGCAGAGAGGCAAATGTTGCCTAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTTTGGGACCTTCCTTCCTGCAGAGAGGCAAATGTTGCCTAGTGA  900

seq1  TCTACATCTTAGCATAGAAGTCGGGAACTCTAAGTTCCAACCATGACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCTTAGCATAGAAGTCGGGAACTCTAAGTTCCAACCATGACTGT  950

seq1  TTGGTCTCTGGCTCCGTAATCCTTTGTGAGTTACTTAACCCTTTTGTATC  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGGTCTCTGGCTCCGTAATCCTTTGTGAGTTACTTAACCCCTTTGTATC  1000

seq1  TCTGCTCCCTTCGCCCCAGAATAAGGATTTAAGTAATGGCTGGCTTCTCG  1050
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  TCTGCTCCCTTCGCCCAAGAATAAGGATTTAAGTAATGGCT-GCTTCTCG  1049

seq1  CCCTG-AGACACGGCATACTG-ATGGGGTAAGGACTTGATC-TACAG-AC  1096
      ||||| ||||||||||||||| ||||||||||||||||||| ||||| ||
seq2  CCCTGAAGACACGGCATACTGAATGGGGTAAGGACTTGATCTTACAGAAC  1099

seq1  AAAT--GCTGAA--TAAAGAATCCCAGCAT-AAAGCTGCCT-CTAAACCA  1140
      ||||   |||||   ||||||||||||||| |||||||||| ||||||||
seq2  AAATTGCCTGAAATAAAAGAATCCCAGCATAAAAGCTGCCTCCTAAACCA  1149

seq1  TGTTTTCAGACTGGAAACCACATATTTA-GA--TGCAAGC-TGCTCTCCC  1186
      ||  ||| |||  |||| |||||||||| ||  ||||||| |||||||| 
seq2  TGGGTTCCGACCTGAAA-CACATATTTATGAAGTGCAAGCGTGCTCTCC-  1197

seq1  AATGCTCCTTCT-GCCTACTGT--GGAAGTAAAATAAGC  1222
       ||||||||||| |||||||||  |||  ||||||||||
seq2  -ATGCTCCTTCTCGCCTACTGTGGGGAGTTAAAATAAGC  1235