BAC Information

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BAC

Clone NameB6Ng01-346D24
Chromosome19 (Build37)
Map Location 9,164,650 - 9,165,832
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1
Downstream geneAsrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346D24.bB6Ng01-346D24.g
ACCGA128200GA128201
length1,1941,178
definitionB6Ng01-346D24.b B6Ng01-346D24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaccatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccaacattgtacttgaagtcctaggtag
agcaattccacaataaaaggagatcaaggggatacaaattggaaaggaag
aagtcaaaatatcactttttgcagatgatatgatagtgtatataagtgac
cctaaaaatttcaccagagaactcctaaacctgataaacagcttcaatga
agtagctggatataaaattaactcaaacaagtcaatggcctttctctaca
caaaggataaacaggctgagaaagaaattagggaaacaacacccttctca
atagtcacaaataatataaaataccttggtgtcactctaactaaggaagt
gaaagatctgtatgataagaacttcaagtctctaaagaaagaaattaaag
aagatctcaaaagatggaaagatctcccatgctcatggattggcaggatc
aacattgtaaaaatggctgtcttgccaaaagcaatctacagattcaaatc
aatcctcatcaaaattccaactcaattcttcaacgaattagaaagggcaa
tcggcagattaatctggaataacaaaaaacctaggatagcaaaaactctt
ctcaaggataaaaagacctctggtggaatcaccatgcctgacctaaagct
gtactacagagcaattgtgatttaaaaaaaactgcatggcactggtatag
caatacacaggtaggccaatggaatagaattgaagacccagaaatgaacc
cacatacctatggtcacttgatctttgacaacggagctaaaaccatccag
tggaaaaacacagcattttcaacaactgttggttatcatgtagaagaatg
tgaattgatccattcttatctcctgtactaaagtcaagtctaagtggatc
aggaactccacataaaccagagacactgaaaattatagagagaatgcggg
aagcctctagatatggccacagggaaaaatctgatagaactagcaatggc
ctgtgctatagatcgagattcacatggtacctcataattgaaatgacccg
gtcagtaggaaaatgtcactccaaaacctgggaagggatctgta
gaattcttccctaagcagtcttccctaaagcacccccccaccctacactt
tgacgtccaggatagacccctaagcttgcttagcacctgcgggggggcta
tggactgctctctctggctgcactggggcaggtatatagtaaagacagac
tccaagtgggaaaaggaagccacttgattgctagcactatggtgtcacga
gtattgaattggcacatcacgtactagtcccatgaccctccttactccct
gcaatctgctgtgactggttttgaagagtcctgattcctaggttgatgga
gactttgaggtctgggctaggagtcttctgaagtgatataaataacttca
ggcttggtttcagacaaggtcaggaagagtctcactcacagcctgagggg
aattgactgcctggacatttcacctggtatttagattcctaagtccttag
gtcagcaggaccctccccaacaccacacagtgtgtgtgtgcgtgtgtgtg
cgtgtgtgtgcctgtgtgtgtgtgaataacgtgattatgcatgtgggtgc
caggttgttgggccatgttcattgtctcctagtgagccctttccttgttc
tctcatgaatctagtggcaatgacaggagggaggggtgaagcctctagtg
gcctccaccaggtacacccaggagctattgcctaagaccagatgtttatc
ccctggcttcagtgcttagcctatcccaaaaggcagaagctggtaaacaa
gtcccagcacggcccagaaagcaggttggaggctctgggtgggtcattct
gagcctagtgatcttgctgggccacagaaggactggtcagacgacaggtt
ggggccagctcacaaggtcaactgtgaggcaaactgtagaggccagtctc
tgtgtcctcccccagtggccagctctgagcatgctctcaagaaatagctg
ccaaacagaagattgtccgtcatgagtttggttcacttttcttctgcccc
aaaggctgactcctgcattgacctagagccctcctaggactcaaggctga
ctccggcattgaactagaagccctctagaagggtcttggcgtcttctcaa
gcacttggtgttttgctagcaaggatgaatgcttagatctccaactttct
ttataaattgaattttaaaaaaacttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9164650_9165832
seq2: B6Ng01-346D24.g_68_1245

seq1  GAATTCTTCCCTAAGCAGTCTTCCCTAAAGCACCCCCCCACCCTACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTAAGCAGTCTTCCCTAAAGCACCCCCCCACCCTACACTT  50

seq1  TGACGTCCAGGATAGACCCCTAAGCTTGCTTAGCACCTGCGGGGGGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTCCAGGATAGACCCCTAAGCTTGCTTAGCACCTGCGGGGGGGCTA  100

seq1  TGGACTGCTCTCTCTGGCTGCACTGGGGCAGGTATATAGTAAAGACAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGCTCTCTCTGGCTGCACTGGGGCAGGTATATAGTAAAGACAGAC  150

seq1  TCCAAGTGGGAAAAGGAAGCCACTTGATTGCTAGCACTATGGTGTCACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGGGAAAAGGAAGCCACTTGATTGCTAGCACTATGGTGTCACGA  200

seq1  GTATTGAATTGGCACATCACGTACTAGTCCCATGACCCTCCTTACTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAATTGGCACATCACGTACTAGTCCCATGACCCTCCTTACTCCCT  250

seq1  GCAATCTGCTGTGACTGGTTTTGAAGAGTCCTGATTCCTAGGTTGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTGCTGTGACTGGTTTTGAAGAGTCCTGATTCCTAGGTTGATGGA  300

seq1  GACTTTGAGGTCTGGGCTAGGAGTCTTCTGAAGTGATATAAATAACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGAGGTCTGGGCTAGGAGTCTTCTGAAGTGATATAAATAACTTCA  350

seq1  GGCTTGGTTTCAGACAAGGTCAGGAAGAGTCTCACTCACAGCCTGAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGTTTCAGACAAGGTCAGGAAGAGTCTCACTCACAGCCTGAGGGG  400

seq1  AATTGACTGCCTGGACATTTCACCTGGTATTTAGATTCCTAAGTCCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTGCCTGGACATTTCACCTGGTATTTAGATTCCTAAGTCCTTAG  450

seq1  GTCAGCAGGACCCTCCCCAACACCACACAGTGTGTGTGTGCGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGGACCCTCCCCAACACCACACAGTGTGTGTGTGCGTGTGTGTG  500

seq1  CGTGTGTGTGCCTGTGTGTGTGTGAATAACGTGATTATGCATGTGGGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTGCCTGTGTGTGTGTGAATAACGTGATTATGCATGTGGGTGC  550

seq1  CAGGTTGTTGGGCCATGTTCATTGTCTCCTAGTGAGCCCTTTCCTTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTTGGGCCATGTTCATTGTCTCCTAGTGAGCCCTTTCCTTGTTC  600

seq1  TCTCATGAATCTAGTGGCAATGACAGGAGGGAGGGGTGAAGCCTCTAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAATCTAGTGGCAATGACAGGAGGGAGGGGTGAAGCCTCTAGTG  650

seq1  GCCTCCACCAGGTACACCCAGGAGCTATTGCCTAAGACCAGATGTTTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACCAGGTACACCCAGGAGCTATTGCCTAAGACCAGATGTTTATC  700

seq1  CCCTGGCTTCAGTGCTTAGCCTATCCCAAAAGGCAGAAGCTGGTAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTTCAGTGCTTAGCCTATCCCAAAAGGCAGAAGCTGGTAAACAA  750

seq1  GTCCCAGCACGGCCCAGAAAGCAGGTTGGAGGCTCTGGGTGGGTCATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCACGGCCCAGAAAGCAGGTTGGAGGCTCTGGGTGGGTCATTCT  800

seq1  GAGCCTAGTGATCTTGCTGGGCCACAGAAGGACTGGTCAGACGACAGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAGTGATCTTGCTGGGCCACAGAAGGACTGGTCAGACGACAGGTT  850

seq1  GGGGCCAGCTCACAAGGTCAACTGTGAGGCAAACTGTAGAGGCCAGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAGCTCACAAGGTCAACTGTGAGGCAAACTGTAGAGGCCAGTCTC  900

seq1  TGTGTCCTCCCCCAGTGGCCAGCTCTGAGCATGCTCTCAAGAAATAGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCCCCCAGTGGCCAGCTCTGAGCATGCTCTCAAGAAATAGCTG  950

seq1  CCAAACAGAAGATTGTCCGTCATGAGTTTGGTTCAC-TTTCTTCTGCCCC  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAAACAGAAGATTGTCCGTCATGAGTTTGGTTCACTTTTCTTCTGCCCC  1000

seq1  -AAGGCTGACTCCTGCATTGACCTAGAGCCCTCCTAGGAACCCAAGGCTG  1048
       ||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  AAAGGCTGACTCCTGCATTGACCTAGAGCCCTCCTAGG-ACTCAAGGCTG  1049

seq1  ACTCCGGCATTGACCTAG-AGCCCTCCTAGGAAGGGCCTGGCGCCTTCTC  1097
      ||||||||||||| |||| |||||| |||| | || | ||||| ||||||
seq2  ACTCCGGCATTGAACTAGAAGCCCT-CTAGAAGGGTCTTGGCGTCTTCTC  1098

seq1  -AGCACTTGGTTGTTTTGCTTAGCAGGGATG-ATGCCTAGATCCTTCCAA  1145
       ||||||||| |||||||| ||||| ||||| |||| ||||||  |||||
seq2  AAGCACTTGG-TGTTTTGC-TAGCAAGGATGAATGCTTAGATC--TCCAA  1144

seq1  CTTTTCTTTTTATAATTTAAATTTTTAAAAAAAATTTA  1183
      |||   | ||||||| || || ||||||||||| ||||
seq2  CTT---TCTTTATAAATTGAA-TTTTAAAAAAACTTTA  1178