BAC Information

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BAC

Clone NameB6Ng01-347H19
Chromosome13 (Build37)19 (Build37)
Map Location 8,944,152 - 8,945,1508,166,339 - 8,166,861
singlet/doubletsingletsinglet
Overlap geneLOC100039655
Upstream geneLOC791083, LOC382722, Adarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723
Downstream geneIdi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347H19.bB6Ng01-347H19.g
ACCGA129075GA129076
length1,0031,071
definitionB6Ng01-347H19.b B6Ng01-347H19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,944,152 - 8,945,150)(8,166,339 - 8,166,861)
sequence
gaattcaccttgtaaaccaggctggccttgatttcacaaagatccacctg
cctctgcctctgaagtgctggcattaaaggtgggtgccaccacaccctag
ggcatattagccaatcttatggaaacattttctcaattgacagtctcctt
aaagaatgactctaaagtggctgctgagtcacatgtacgtcagtgggtgg
cagagaggagaaaggctctgtctccactcagtgttctgacctaggaacat
ctgaatgattagtattctaacattccttgaaataacagagcctgagatga
tcatcagccaggcaaggcttggtgggctcccagcattgggagcatgcctg
agacgggaagaactgtgcctgggaccaaaccctagatagacctttgggag
gagtcacttgggcaagctgggtgaggagagagcctgagaagaccacaggt
ctggtgtcatacaggcctggtggtaccaaccatgctcaaggtgacagcag
cctggagccataatgcacgaaatgtacatagcactcctgagatgacccta
gatactcagagatcccagacaagaggagcaagtaagtgatggagaaatgg
aagagaaagaggaacagaagaaagtgggcacaatgaagagaagcagacct
agagagactcaagggtagtgaggagcagcctgatgtgagatgctgcttgg
gaccttggaggggtcggggctcctgatcccactgggggtcacatctggat
ctatggccctgcagaagcagggatctgttaccaccaaagaccaggtgttg
tatatatgggagggttgtgcagaactgaccctaaccctcacccgggcatc
atgggagagctggccctaggggcactggagcatgacagctgaccacaccc
ctagccagctgcagtactcaggggagtggaccctgcaccttgcctgggca
acagaggtgagctgacccctgggtttcagaaggttgggggggttgggagt
tga
gaattcctttgacttcacaattgcaaagactctgtccatcagggtatggt
gtctggaatgggtcagtcatggcagcttgcactggtgtcttctcccaagg
taccagctaagaagctgagatggaccgtgtgatggctattcttggctgtt
accttgactacacctggaattacctaaaacccaaacaacagggcacacct
gtgctggactttttccctaattatttgaagtctgaaagttcacttctaat
ctggattttttgagttgagaagatctatttttattttatttatttattta
tttatttatttttacttttattttttagtttttcgagacagggtttctct
gtgtagtcctggctgtcctggaactcactttgtagaccaggctggcctca
aactcagaaatctgcctgcctctgcctcccaagtgctgggattaaagacg
tgtgccaccttgcccagcaaagatctattttatttaattaggtatttatt
tcagttacatttccaatgctatcccaaaagtcccccacatgctcccccac
ccactcccccatgcttccactcccacttcttggccctgtcgttcccctgt
actgacacatatgaagtttgcacgaccaatgggcctctctttccactgat
ggctgactaggccatcttctgatatatatgcagctagagacacgagttcc
ggggggtactagttagttcatattgttgttccacctatagggttgcagat
ccctttagctccttgggtactttctctagttcctccattgggggccatgt
ggtccacccaatagctgactgtgagcatccacttctgtgtttgctaagcc
ccagcatagtctcacaagagacagctatatctgggtccttttcagcaaaa
tcttgctagtgtatgcaatggtgtcagcatttagaagctgatatgggatg
aatcaccggatatggcagtctctagatggtccatccttcatctaatctcc
aacttgtctctgtactccttccatggatgtttgttcccaaatctagagag
gcaaagtgtccacacttggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_8944152_8945150
seq2: B6Ng01-347H19.b_47_1049

seq1  GAATTCACCTTGTAAACCAGGCTGGCCTTGATTTCACAAAGATCCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTGTAAACCAGGCTGGCCTTGATTTCACAAAGATCCACCTG  50

seq1  CCTCTGCCTCTGAAGTGCTGGCATTAAAGGTGGGTGCCACCACACCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCTGAAGTGCTGGCATTAAAGGTGGGTGCCACCACACCCTAG  100

seq1  GGCATATTAGCCAATCTTATGGAAACATTTTCTCAATTGACAGTCTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATTAGCCAATCTTATGGAAACATTTTCTCAATTGACAGTCTCCTT  150

seq1  AAAGAATGACTCTAAAGTGGCTGCTGAGTCACATGTACGTCAGTGGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGACTCTAAAGTGGCTGCTGAGTCACATGTACGTCAGTGGGTGG  200

seq1  CAGAGAGGAGAAAGGCTCTGTCTCCACTCAGTGTTCTGACCTAGGAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGAGAAAGGCTCTGTCTCCACTCAGTGTTCTGACCTAGGAACAT  250

seq1  CTGAATGATTAGTATTCTAACATTCCTTGAAATAACAGAGCCTGAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGATTAGTATTCTAACATTCCTTGAAATAACAGAGCCTGAGATGA  300

seq1  TCATCAGCCAGGCAAGGCTTGGTGGGCTCCCAGCATTGGGAGCATGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCCAGGCAAGGCTTGGTGGGCTCCCAGCATTGGGAGCATGCCTG  350

seq1  AGACGGGAAGAACTGTGCCTGGGACCAAACCCTAGATAGACCTTTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGGAAGAACTGTGCCTGGGACCAAACCCTAGATAGACCTTTGGGAG  400

seq1  GAGTCACTTGGGCAAGCTGGGTGAGGAGAGAGCCTGAGAAGACCACAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTTGGGCAAGCTGGGTGAGGAGAGAGCCTGAGAAGACCACAGGT  450

seq1  CTGGTGTCATACAGGCCTGGTGGTACCAACCATGCTCAAGGTGACAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTCATACAGGCCTGGTGGTACCAACCATGCTCAAGGTGACAGCAG  500

seq1  CCTGGAGCCATAATGCACGAAATGTACATAGCACTCCTGAGATGACCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCCATAATGCACGAAATGTACATAGCACTCCTGAGATGACCCTA  550

seq1  GATACTCAGAGATCCCAGACAAGAGGAGCAAGTAAGTGATGGAGAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCAGAGATCCCAGACAAGAGGAGCAAGTAAGTGATGGAGAAATGG  600

seq1  AAGAGAAAGAGGAACAGAAGAAAGTGGGCACAATGAAGAGAAGCAGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGAGGAACAGAAGAAAGTGGGCACAATGAAGAGAAGCAGACCT  650

seq1  AGAGAGACTCAAGGGTAGTGAGGAGCAGCCTGATGTGAGATGCTGCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACTCAAGGGTAGTGAGGAGCAGCCTGATGTGAGATGCTGCTTGG  700

seq1  GACCTTGGAGGGGTCGGGGCTCCTGATCCCACTGGGGGTCACATCTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGAGGGGTCGGGGCTCCTGATCCCACTGGGGGTCACATCTGGAT  750

seq1  CTATGGCCCTGCAGAAGCAGGGATCTGTTACCACCAAAGACCAGGTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCCCTGCAGAAGCAGGGATCTGTTACCACCAAAGACCAGGTGTTG  800

seq1  TATATATGGGAGGGTTGTGCAGAACTGACCCTAACCCTCACCCGGGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGGGAGGGTTGTGCAGAACTGACCCTAACCCTCACCCGGGCATC  850

seq1  ATGGGAGAGCTGGCCCTAGGGGCACTGGAGCATGACAGCTGACCACACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGAGCTGGCCCTAGGGGCACTGGAGCATGACAGCTGACCACACCC  900

seq1  CTAGCCAGCTGCAGTACTCAGGGGAGTGGACCCTGCACCTTGCCTGGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAGCTGCAGTACTCAGGGGAGTGGACCCTGCACCTTGCCTGGGCA  950

seq1  ACAGAGGTGAGCTGACCC--TGGTTTCAG-AGGTT-GGGGGGTTGGGAGT  996
      ||||||||||||||||||   |||||||| ||||| ||||||||||||||
seq2  ACAGAGGTGAGCTGACCCCTGGGTTTCAGAAGGTTGGGGGGGTTGGGAGT  1000

seq1  TGA  999
      |||
seq2  TGA  1003

seq1: chr19_8166339_8166861
seq2: B6Ng01-347H19.g_729_1137 (reverse)

seq1  GACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATAGGAAACAAAACACC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATGGAAGGAGTTACAGAGACAAAATTTGGAAGTGAATCCATGAAACTCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAGGAAGACCCAAGTGTGGACTCTTTGCCCCTTCTTAGAATTGGGAAC  150
              || |||||||||||| ||||||| ||   |||| ||||||||
seq2  --------GA-CCAAGTGTGGACACTTTGCCTCT--CTAGATTTGGGAAC  39

seq1  AAGACATCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAA  200
      || |||||||||||||||| |||||||||||   |||||| | |||   |
seq2  AA-ACATCCATGGAAGGAG-TACAGAGACAA--GTTGGAGATTAGA-TGA  84

seq1  AGGATGGACCATCTATTGATTGCCATATCCAGAGATACATCCCATGATCA  250
      |||||||||||||||  || |||||||||| | ||| |||||||| ||||
seq2  AGGATGGACCATCTAGAGACTGCCATATCCGGTGATTCATCCCAT-ATCA  133

seq1  CCTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTG-AAA  299
       |||| ||| |||||||||||||||||||||||||||||||||||| |||
seq2  GCTTCTAAATGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAA  183

seq1  GGACCCAGATATAGCTGTCTCTTGTAAGACTATGCCAGAGCCTAGCAAAC  349
      ||||||||||||||||||||||||| |||||||||  | || ||||||||
seq2  GGACCCAGATATAGCTGTCTCTTGTGAGACTATGCTGGGGCTTAGCAAAC  233

seq1  ACAGAAGTGGATGCTCACAGTCAGCTGTTGAATGCACCACAGGGCCCCCA  399
      |||||||||||||||||||||||||| |||  || |||||| ||||||||
seq2  ACAGAAGTGGATGCTCACAGTCAGCTATTGGGTGGACCACATGGCCCCCA  283

seq1  ATGGAGGAATTAGAGAAAGCACCCAAGGAACTAAAGGGAACTGCAACCCT  449
      ||||||||| ||||||||| ||||||||| ||||||||| ||||||||||
seq2  ATGGAGGAACTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCT  333

seq1  ATAGGTGGAACAACAATATGAACTAAGTAGTA--CCCCGGAGCTCTTGTC  497
      |||||||||||||||||||||||||| |||||  ||||||| ||| ||||
seq2  ATAGGTGGAACAACAATATGAACTAACTAGTACCCCCCGGAACTCGTGTC  383

seq1  TCTAGCTGCATATGTATCAAAAGATG  523
      ||||||||||||| ||||| ||||||
seq2  TCTAGCTGCATATATATCAGAAGATG  409