BAC Information

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BAC

Clone NameB6Ng01-348D21
Chromosome19 (Build37)
Map Location 44,520,834 - 44,521,969
singlet/doubletsinglet
Overlap genenone
Upstream geneCnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1
Downstream geneWnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348D21.bB6Ng01-348D21.g
ACCGA129593GA129594
length1,1331,139
definitionB6Ng01-348D21.b B6Ng01-348D21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattatgttatatgaaagtgggcggggtgagtccaggaaggctta
aggggaaaaagaaatggtcaaaattcattgtatacatacaaaaaattctc
aaagaataaattcaaaattatattagaatatagaacaaggtctagagaga
tggcacagaggttaagagcactgagtgatcgtctggaggatggaggttcc
attcttagcacccaccaggcacctagcaccggtctgtaaccagttccaga
gaatctgatgccctcttctggtctccgtgaacaccaagcccatatgtggt
gcacagataatgcatgcaggcaatacacccatacacatagaataaaaata
atctcatttaaaaaataataaaacaaccctatgtcctatgtgtcatgatg
atcctcattttccagtcccaggggagcttgtgacttgccttaggtaaaag
aaaaaaaattaataaagccaggactcaaacacaaacccgcctgcctccac
agtggactgattgtgtttggctccaaggtcagaagtgtacacccagggag
tgaagtttcaggccaaactcaggctctatgaaaaggagccatctcctacc
cccgtctgtgataggaaacgggcaactttacagactctgctttcatggct
ggggtgtctgtcggctgcctgccctgggtggggttagccttttctgcttc
tttatggtccagtgaaagggtggatggctttccttatttccaagggttac
atgaggccagggaatggaaggagtcagtctgtgtaaacgccgtgctgtca
gtttaacagttagctctttgaggactgcatcccagtcacttttcaaagtc
tggactagcaacataaaggatgtaaatgctctggaggggtcggggaccag
aacaggcatttgtaaattgtctcattttcttttcttaattcattttggaa
taaaaatgaattcctctatacacgctgatacagctgaatgttattttccc
ttcttgctgtagcctcagtcaatttcccaattgccaaagattcagaagaa
atccccacactgatcctgctattggcctggactgaatgatactgctatcg
ctacattggcatacatgtctccacgttactgac
gaattcagtgagaaggttaggtaacattcaagtttacttctagtagagac
agtgaaactaatgaggcattacacagaacgagatagaatagctcagggct
agtctgcagagtgatcacttgggacagtagccagtcttacccagacaagg
gaattcaccagggcctagcgattaggtgggtttaccatgagaaagctagg
gaatctcactgagacaggtttcttcattaggcccaaagaaatcaggcagg
actatggagcataaaattttttttatgctgaaaaagtaaaacgtaaaaac
aaaattctaggcctttgggagtgtggcctttgtggctcagtgctccgagg
tgtgctggtcataaaacagatagcaacattcctccaccacctgcttcctg
ggttcaaagagtgttaattcaaagaatgtgctattgttaggggctcttag
aaactgtcttgagaaataaccctcacaattaccaggtattcctcgtgact
cttgtgactttgcacttccttgtgactcttaactggtatttttggtattt
tccaacaatgccctccccacttccttgagttgtggtttctccctttaaat
acccccttatccagctactcggggcaccacggtcctctacccctgcgtgg
tgtatgatcgtggacctgagagcgctcttgaataaaaatcctcttgcagt
ttgcagcaagaccgtttcttgtgggtgattttggggtgttgcctctcctg
agtcagaacatgggggagtcctcacgttgtgagtctttcaatgccttggt
ccagctatttttattatataatcagggaggaagcaggctgatccagactt
tgaccttgcagccactaagaaggagattacctagggggtagcctttccga
cctagatggctctatgggttctgtcacctgtcactgctctcctcaaagac
actgctaccttgctgagaggcccctgaggcattctgagatcatctattct
tgcacaggctgctccagacatcagatgactgcgggatggacttcctctta
tagcacactcctcttagtaactcgtgacgtacacgatggtctgtctcata
tctctcacggtcttagtctttatttcagaatcctcacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44520834_44521969
seq2: B6Ng01-348D21.b_47_1179 (reverse)

seq1  GTCAGTACTGT-GAGACAATGTATGCCAAATGTAGCGAATAGCAAGTATC  49
      |||||||  || ||||| ||||||||| ||||||||| ||||| ||||||
seq2  GTCAGTAACGTGGAGAC-ATGTATGCC-AATGTAGCG-ATAGC-AGTATC  46

seq1  A-TCAGTCCA-GCCAATAGCAAGGATCAGTTGTGGGG-TTTC-TCTGATT  95
      | |||||||| ||||||||| |||||||| ||||||| |||| ||||| |
seq2  ATTCAGTCCAGGCCAATAGC-AGGATCAG-TGTGGGGATTTCTTCTGAAT  94

seq1  CTTTGGCAATTGGGAATTTGACCTGAGGCTACAGCAAGAAGGGAAA--TA  143
      |||||||||||||||| |||| ||||||||||||||||||||||||   |
seq2  CTTTGGCAATTGGGAAATTGA-CTGAGGCTACAGCAAGAAGGGAAAATAA  143

seq1  CATTCAGCTTGTATCAGCGTGTATAGAGGAATTTCATTTTTATTCCAAAA  193
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  CATTCAGC-TGTATCAGCGTGTATAGAGGAA-TTCATTTTTATTCCAAAA  191

seq1  TGAATTAAGAAAAAGAAAATGAGACAATTTACAAATGCCTGTTCTGGTCC  243
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAG-AAAAGAAAATGAGACAATTTACAAATGCCTGTTCTGGTCC  240

seq1  CCGACCCCTCCAGAGCATTTACATCCTTTATGTTGCTAGTCCAGACTTTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCCCTCCAGAGCATTTACATCCTTTATGTTGCTAGTCCAGACTTTG  290

seq1  AAAAGTGACTGGGATGCAGTCCTCAAAGAGCTAACTGTTAAACTGACAGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGACTGGGATGCAGTCCTCAAAGAGCTAACTGTTAAACTGACAGC  340

seq1  ACGGCGTTTACACAGACTGACTCCTTCCATTCCCTGGCCTCATGTAACCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCGTTTACACAGACTGACTCCTTCCATTCCCTGGCCTCATGTAACCC  390

seq1  TTGGAAATAAGGAAAGCCATCCACCCTTTCACTGGACCATAAAGAAGCAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATAAGGAAAGCCATCCACCCTTTCACTGGACCATAAAGAAGCAG  440

seq1  AAAAGGCTAACCCCACCCAGGGCAGGCAGCCGACAGACACCCCAGCCATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTAACCCCACCCAGGGCAGGCAGCCGACAGACACCCCAGCCATG  490

seq1  AAAGCAGAGTCTGTAAAGTTGCCCGTTTCCTATCACAGACGGGGGTAGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAGTCTGTAAAGTTGCCCGTTTCCTATCACAGACGGGGGTAGGA  540

seq1  GATGGCTCCTTTTCATAGAGCCTGAGTTTGGCCTGAAACTTCACTCCCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCCTTTTCATAGAGCCTGAGTTTGGCCTGAAACTTCACTCCCTG  590

seq1  GGTGTACACTTCTGACCTTGGAGCCAAACACAATCAGTCCACTGTGGAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACACTTCTGACCTTGGAGCCAAACACAATCAGTCCACTGTGGAGG  640

seq1  CAGGCGGGTTTGTGTTTGAGTCCTGGCTTTATTAATTTTTTTTCTTTTAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGGTTTGTGTTTGAGTCCTGGCTTTATTAATTTTTTTTCTTTTAC  690

seq1  CTAAGGCAAGTCACAAGCTCCCCTGGGACTGGAAAATGAGGATCATCATG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCAAGTCACAAGCTCCCCTGGGACTGGAAAATGAGGATCATCATG  740

seq1  ACACATAGGACATAGGGTTGTTTTATTATTTTTTAAATGAGATTATTTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGGACATAGGGTTGTTTTATTATTTTTTAAATGAGATTATTTTT  790

seq1  ATTCTATGTGTATGGGTGTATTGCCTGCATGCATTATCTGTGCACCACAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATGTGTATGGGTGTATTGCCTGCATGCATTATCTGTGCACCACAT  840

seq1  ATGGGCTTGGTGTTCACGGAGACCAGAAGAGGGCATCAGATTCTCTGGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTGGTGTTCACGGAGACCAGAAGAGGGCATCAGATTCTCTGGAA  890

seq1  CTGGTTACAGACCGGTGCTAGGTGCCTGGTGGGTGCTAAGAATGGAACCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTACAGACCGGTGCTAGGTGCCTGGTGGGTGCTAAGAATGGAACCT  940

seq1  CCATCCTCCAGACGATCACTCAGTGCTCTTAACCTCTGTGCCATCTCTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCCAGACGATCACTCAGTGCTCTTAACCTCTGTGCCATCTCTCT  990

seq1  AGACCTTGTTCTATATTCTAATATAATTTTGAATTTATTCTTTGAGAATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGTTCTATATTCTAATATAATTTTGAATTTATTCTTTGAGAATT  1040

seq1  TTTTGTATGTATACAATGAATTTTGACCATTTCTTTTTCCCCTTAAGCCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATGTATACAATGAATTTTGACCATTTCTTTTTCCCCTTAAGCCT  1090

seq1  TCCTGGACTCACCCCGCCCACTTTCATATAACATAATGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGACTCACCCCGCCCACTTTCATATAACATAATGAATTC  1133