BAC Information

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BAC

Clone NameB6Ng01-349A05
Chromosome19 (Build37)
Map Location 8,718,352 - 8,850,410
singlet/doubletdoublet
Overlap geneChrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l
Upstream geneLOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6
Downstream geneLOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349A05.bB6Ng01-349A05.g
ACCGA130127GA130128
length1,108707
definitionB6Ng01-349A05.b B6Ng01-349A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,849,297 - 8,850,410)(8,718,352 - 8,719,057)
sequence
gaattctcatgaattcaaggcccagtctgggctcccagtattgtttttat
gtgtgtggtctaaactcagctctcatttctctaacaagtacaccacttcc
ttactgattgtatttactagcagtctgcaaacaatttctgtgtcttaatg
atttaattatgcctaaatagctcagagtaaatgccagtaatggggctttt
taatattgcatgtatttgtatgttttgatcccttatgcttaccaaaagct
tatgcatacaatagatcccagagacgtgggatatgtcaataaggaaatag
aggactgagccctgtcaaaaattgagtggatcttttgtgggaaagggcac
tgaagagggcatttggaacaaggttgcttgactgcagtcctttgcattcc
aggcagtggagcgagtcctctacccacatctgcccacttactggacaaac
ttgcaggctgtgctggatgactattccgtatctaatgcccaggtcaaagc
ggacgggcacaaagtgtatggagccattctggtgagttagcagtcccacc
ttctctttcctgcaggagcttagcagatttactttgccatggctcttggg
cccaggttcctcttagctctctgtttacaggtggccgtagaacgactatt
gaagatgaaagctcaggcagcagagcccaaccgcggtggccttggcggga
gagggtaccgtcctgcggaggacctgccttgggacagccttctcctacaa
gaatctccccccgggggcagctccgaaacaggttttgggtctggtctccc
gccaccatcaggggttgcgggaccagaggacccttcttccttgaccctgg
cagacatctaccgtgagctatactccttctttggtgacagcttggccact
cgctttggcactggccagcctgctcccacggccccgcgaccacccggaga
cagagagcctgcggctgccccggattcgtgcggaaaatgccgcagctgac
tgccagcgccgtgttcagccctcaggttgacgaaagccgtgcggtggact
tctcgccacgccaccgccgcctcgagagcagccgcttaccgtccgtacac
acgggcgc
gaattcagagattcagctggcatgactggctctattacattcttaaaaat
aaataaatataatcccaacacttggaaggcagaggcaggtggatttctga
gttcgaggccagcctggtttacagaatgagttccaggacagccagggcta
cacagagaaaccctgtcttgaaaaacaataaataaataaataaataaata
aatagataaataaaagcaggctggagagatggctcagaggttaagagcac
tgactcctcttccaaaggtcctgagttcaattcccagcaaccacatggtg
gctcacaaccatctgcaatgggttgtctgaagacagggacagtgttctca
tatacattaaataaataattctttttttttaaaggcaaaataatggagaa
aataaaagggtctgtgatctccttagcttggtgttttgtgggactcctaa
cagtggggttggggtgtctctgacaatcttggaacccttttcttcctact
gggttgcctcacccaggcttgataagaggatttgtgcttagtctcattat
atcttgttaggccatatttggtggatatccctggaaggcctgctcttttc
tgaagggaaatggacaaggagtggaactgggcgagaggagagtggggctg
ggagggaggggaaactgcaactaaaaatcgtcagtgatcaccaggggtta
gggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8849297_8850410
seq2: B6Ng01-349A05.b_50_1157 (reverse)

seq1  GCGCCCG-GTGTACGCGCGGT-AGCGGCCTGCTCTCCGAGGCGGCGGTGG  48
      ||||||| |||||||  |||| ||||| ||||||| ||||||||||||||
seq2  GCGCCCGTGTGTACGGACGGTAAGCGG-CTGCTCT-CGAGGCGGCGGTGG  48

seq1  CGGTGGCGAGAGTCCCACCGCACGGGCTTTCGTCACCCTGAGGGCTGACC  98
      | |||||||||   ||||||||| ||||||||||| |||||||||||| |
seq2  C-GTGGCGAGAAGTCCACCGCAC-GGCTTTCGTCAACCTGAGGGCTGAAC  96

seq1  ACGGCGCTGGCAGTCAGCTGCGGCATTTTCCGCACCGAATCCGGGGCAGC  148
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACGGCGCTGGCAGTCAGCTGCGGCATTTTCCGCA-CGAATCCGGGGCAGC  145

seq1  CGCAGGCTCCTTCTTGTCTCCGGGTGGTCGCGGGGCCGTGGGAGCAGGCT  198
      |||||||||  || ||||||||||||||||||||||||||||||||||||
seq2  CGCAGGCTC--TC-TGTCTCCGGGTGGTCGCGGGGCCGTGGGAGCAGGCT  192

seq1  GGCCAGTGCCAAAGCGAGTGGCCAAGCTGTCACCAAAGAAGGAGTATAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTGCCAAAGCGAGTGGCCAAGCTGTCACCAAAGAAGGAGTATAGC  242

seq1  TCACGGTAGATGTCTGCCAGGGTCAAGGAAGAAGGGTCCTCTGGTCCCGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGTAGATGTCTGCCAGGGTCAAGGAAGAAGGGTCCTCTGGTCCCGC  292

seq1  AACCCCTGATGGTGGCGGGAGACCAGACCCAAAACCTGTTTCGGAGCTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTGATGGTGGCGGGAGACCAGACCCAAAACCTGTTTCGGAGCTGC  342

seq1  CCCCGGGGGGAGATTCTTGTAGGAGAAGGCTGTCCCAAGGCAGGTCCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGGGGAGATTCTTGTAGGAGAAGGCTGTCCCAAGGCAGGTCCTCC  392

seq1  GCAGGACGGTACCCTCTCCCGCCAAGGCCACCGCGGTTGGGCTCTGCTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACGGTACCCTCTCCCGCCAAGGCCACCGCGGTTGGGCTCTGCTGC  442

seq1  CTGAGCTTTCATCTTCAATAGTCGTTCTACGGCCACCTGTAAACAGAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTTCATCTTCAATAGTCGTTCTACGGCCACCTGTAAACAGAGAG  492

seq1  CTAAGAGGAACCTGGGCCCAAGAGCCATGGCAAAGTAAATCTGCTAAGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGGAACCTGGGCCCAAGAGCCATGGCAAAGTAAATCTGCTAAGCT  542

seq1  CCTGCAGGAAAGAGAAGGTGGGACTGCTAACTCACCAGAATGGCTCCATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGAAAGAGAAGGTGGGACTGCTAACTCACCAGAATGGCTCCATA  592

seq1  CACTTTGTGCCCGTCCGCTTTGACCTGGGCATTAGATACGGAATAGTCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTGCCCGTCCGCTTTGACCTGGGCATTAGATACGGAATAGTCAT  642

seq1  CCAGCACAGCCTGCAAGTTTGTCCAGTAAGTGGGCAGATGTGGGTAGAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACAGCCTGCAAGTTTGTCCAGTAAGTGGGCAGATGTGGGTAGAGG  692

seq1  ACTCGCTCCACTGCCTGGAATGCAAAGGACTGCAGTCAAGCAACCTTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCTCCACTGCCTGGAATGCAAAGGACTGCAGTCAAGCAACCTTGTT  742

seq1  CCAAATGCCCTCTTCAGTGCCCTTTCCCACAAAAGATCCACTCAATTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCCCTCTTCAGTGCCCTTTCCCACAAAAGATCCACTCAATTTTT  792

seq1  GACAGGGCTCAGTCCTCTATTTCCTTATTGACATATCCCACGTCTCTGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGCTCAGTCCTCTATTTCCTTATTGACATATCCCACGTCTCTGGG  842

seq1  ATCTATTGTATGCATAAGCTTTTGGTAAGCATAAGGGATCAAAACATACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTGTATGCATAAGCTTTTGGTAAGCATAAGGGATCAAAACATACA  892

seq1  AATACATGCAATATTAAAAAGCCCCATTACTGGCATTTACTCTGAGCTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGCAATATTAAAAAGCCCCATTACTGGCATTTACTCTGAGCTAT  942

seq1  TTAGGCATAATTAAATCATTAAGACACAGAAATTGTTTGCAGACTGCTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCATAATTAAATCATTAAGACACAGAAATTGTTTGCAGACTGCTAG  992

seq1  TAAATACAATCAGTAAGGAAGTGGTGTACTTGTTAGAGAAATGAGAGCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAATCAGTAAGGAAGTGGTGTACTTGTTAGAGAAATGAGAGCTG  1042

seq1  AGTTTAGACCACACACATAAAAACAATACTGGGAGCCCAGACTGGGCCTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGACCACACACATAAAAACAATACTGGGAGCCCAGACTGGGCCTT  1092

seq1  GAATTCATGAGAATTC  1114
      ||||||||||||||||
seq2  GAATTCATGAGAATTC  1108

seq1: chr19_8718352_8719057
seq2: B6Ng01-349A05.g_70_775

seq1  GAATTCAGAGATTCAGCTGGCATGACTGGCTCTATTACATTCTTAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATTCAGCTGGCATGACTGGCTCTATTACATTCTTAAAAAT  50

seq1  AAATAAATATAATCCCAACACTTGGAAGGCAGAGGCAGGTGGATTTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATATAATCCCAACACTTGGAAGGCAGAGGCAGGTGGATTTCTGA  100

seq1  GTTCGAGGCCAGCCTGGTTTACAGAATGAGTTCCAGGACAGCCAGGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAGCCTGGTTTACAGAATGAGTTCCAGGACAGCCAGGGCTA  150

seq1  CACAGAGAAACCCTGTCTTGAAAAACAATAAATAAATAAATAAATAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAACCCTGTCTTGAAAAACAATAAATAAATAAATAAATAAATA  200

seq1  AATAGATAAATAAAAGCAGGCTGGAGAGATGGCTCAGAGGTTAAGAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAAATAAAAGCAGGCTGGAGAGATGGCTCAGAGGTTAAGAGCAC  250

seq1  TGACTCCTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTG  300

seq1  GCTCACAACCATCTGCAATGGGTTGTCTGAAGACAGGGACAGTGTTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACCATCTGCAATGGGTTGTCTGAAGACAGGGACAGTGTTCTCA  350

seq1  TATACATTAAATAAATAATTCTTTTTTTTTAAAGGCAAAATAATGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTAAATAAATAATTCTTTTTTTTTAAAGGCAAAATAATGGAGAA  400

seq1  AATAAAAGGGTCTGTGATCTCCTTAGCTTGGTGTTTTGTGGGACTCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGGTCTGTGATCTCCTTAGCTTGGTGTTTTGTGGGACTCCTAA  450

seq1  CAGTGGGGTTGGGGTGTCTCTGACAATCTTGGAACCCTTTTCTTCCTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGTTGGGGTGTCTCTGACAATCTTGGAACCCTTTTCTTCCTACT  500

seq1  GGGTTGCCTCACCCAGGCTTGATAAGAGGATTTGTGCTTAGTCTCATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCCTCACCCAGGCTTGATAAGAGGATTTGTGCTTAGTCTCATTAT  550

seq1  ATCTTGTTAGGCCATATTTGGTGGATATCCCTGGAAGGCCTGCTCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTTAGGCCATATTTGGTGGATATCCCTGGAAGGCCTGCTCTTTTC  600

seq1  TGAAGGGAAATGGACAAGGAGTGGAACTGGGCGAGAGGAGAGTGGGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAAATGGACAAGGAGTGGAACTGGGCGAGAGGAGAGTGGGGCTG  650

seq1  GGAGGGAGGGGAAACTGCAACTAAAAATCGTCAGTGATCACCAGGGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGGGAAACTGCAACTAAAAATCGTCAGTGATCACCAGGGGTTA  700

seq1  GGGAGG  706
      ||||||
seq2  GGGAGG  706