Query= MSMg01no046_f04.b1 MSMg01no046_f04.b1 CHROMAT_FILE:
MSMg01no046_f04.b1 PHD_FILE: MSMg01no046_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:28 2005
(431 letters)
>mm_chr19_11450862_11451692
Length = 831
Score = 818 bits (423), Expect = 0.0
Identities = 426/427 (99%)
Strand = Plus / Minus
Query: 5 ggaattcatcatcctatctgacaacctttaagcatcctcttgtgtccatctgatcttgta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ggaattcatcatcctatctgacaacctttaagcatcctcttgtgtccatctgatcttgta 572
Query: 65 tatttaatctaaccccactcaatatctatggtggtcatttaaaaatataaaacagtttta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tatttaatctaaccccactcaatatctatggtggtcatttaaaaatataaaacagtttta 512
Query: 125 atttcctattaagagaagtccatatttcaaccccaacctatatttctaatattattttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atttcctattaagagaagtccatatttcaaccccaacctatatttctaatattattttta 452
Query: 185 tttttgccccgttttgttttgggagtatcaaatacattgaatatgtttcagctttcagac 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 451 tttttgccccgttttgttttgggagtatcaaatacattgaatatatttcagctttcagac 392
Query: 245 atcatcgattttattcctgctctggcattctagacacattcagctacattgcagaaaatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atcatcgattttattcctgctctggcattctagacacattcagctacattgcagaaaatc 332
Query: 305 ttgaccacatccctttctgctctgccatcacaacaaaaagtctactctcatttcttcttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttgaccacatccctttctgctctgccatcacaacaaaaagtctactctcatttcttcttg 272
Query: 365 ggaactgatagtatcacatgtgttctgccttccttcacatgcatctccctaccacatatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggaactgatagtatcacatgtgttctgccttccttcacatgcatctccctaccacatatg 212
Query: 425 agttact 431
|||||||
Sbjct: 211 agttact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_f04.g1 MSMg01no046_f04.g1 CHROMAT_FILE:
MSMg01no046_f04.g1 PHD_FILE: MSMg01no046_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:28 2005
(290 letters)
>mm_chr19_11283523_11284212
Length = 690
Score = 470 bits (243), Expect = e-137
Identities = 284/311 (91%), Gaps = 21/311 (6%)
Strand = Plus / Plus
Query: 1 acccctcaatccttatacagctcagatcccacatttcattatttgaataagtttttgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 acccctcaatccttatacagctcagatcccacatttcattatttgaatacgtttttgaca 260
Query: 61 gtcctttaagcatccttggtccttgcttattgtatttatttattattaacttcattcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gtcctttaagcatccttggtccttgcttattgtatttatttattattaaattcattcttt 320
Query: 121 gacatattcatacatgtatatagcagtattctgactactcaacccccttattcccatacc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gacatattcatacatgtatatagcagtattctgactactcaatccccttattcccatacc 380
Query: 181 tctcttccacctccatca---------------------tcactttctatatcttctatg 219
|||||||||||||||||| |||||||| ||||||||||||
Sbjct: 381 tctcttccacctccatcaaccctatatccttctcacaagtcactttccatatcttctatg 440
Query: 220 tgtctctgttttgttttgagagtcttttaaccagggccccctgtgtgactgtggttttgg 279
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 441 tgtctctgttttgttttgagagtcttttaaccagggccccctgtgtgtctgtgggtttgg 500
Query: 280 aactctccagt 290
|||||||||||
Sbjct: 501 aactctccagt 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
