BAC Information

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BAC

Clone NameMSMg01-047A09
Chromosome19 (Build37)
Map Location 13,931,190 - 13,931,826
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501
Downstream geneOlfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047A09.T7 (MSMg01no047_a09.b1)MSMg01-047A09.TJ (MSMg01no047_a09.g1)
ACCAG277255AG277256
length704725
length of high quality
(start - end)		637 (47 - 683)456 (77 - 532)
definitionCHROMAT_FILE: MSMg01no047_a09.b1 PHD_FILE: MSMg01no047_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:18 2005CHROMAT_FILE: MSMg01no047_a09.g1 PHD_FILE: MSMg01no047_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTTTCACTGTATTATTCTAACAGAACCAATTTCTAGCTCATTT
TATATACCAGCCACTTGTATTATAAGAAAGTATATTTATGACTTAGGTTG
GCCATCTGACTAACCTACCTGCTTTCTACAAAATGCTTAAACAAACATGT
ATTAGTTCCAAATCAGACCAAATGAACTCAGATGTAATATCCGACCAGGC
ACTTATGACATAACTACCTCATCCCTAAAATCCTGAGAAGAAACTAGCTC
CAAAGTTACATCTATGCAAACTAAGAAAGATAACTACAGAGAGAATCTGG
TCTTTGCCATTAGAACTTATAACTAAATAATGCCATGTCTATCCAGGAAG
TTGAAGTCTTGTATGGGATACAAAGGTAAGAATGGTTCACTCTTGTGGAT
AACTCCTGCTTTGTTTTTATGTTGAGGAAAGATTCTATTCATCACTAAGT
CAACTTTTGGAAAGCTCTCAATTTTGTTGTGAAATTGAAATGAATATATG
ATGTGTTTAGCATTTCCTTATTTCAAAGCAAGATCTCAATACAGATTCTG
TTACATATTGAGGTATTAATTCCAGTAGAGTGAACAATATTAACATTGTT
GTACTCTTTCAGTGTCCCTAATGAAACTCAAACTTTAGAAGAAAGAGAAA
GAGT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTTCTCCCACTTTCACCATCTC
TGAGTTTCTTCTAGTTCTTTATGTAGGGGTGAAGTCTTGTATTTTCTCTG
TCTACTTTGACATGCATGTTGTTGTCATTTTTGTTCAGCTGATGTCTAGG
AAGTCATGTTGGTAAGACTTTATTTGTGTAGCTTCTGACTTCACTAGGAG
TCACAATCCTATAAAAATAACCGTCTAATCCCCTGGATGTCAGAGACTTT
CTTTGTCCTCTTCTGAAGTGTTCTAGGAGTCTTAGGTCTGGGAGTGTTTA
ATAGATGAATTGACCGGGTCTAGGCTTCTCAACTATTTATTTTGCTTGGC
TGTTTTTTGGTTTTTGTTTTATAATGGTCTGTTTGTTGCAAAAAGATTTT
TCTTTGATGAAAGGTGAGAATTACACATATCTGTGGGTATAAGGATAAAT
GTTTAGATCTTTAAGGATTGTGATGGTTTAATAAAGTGCCGTTGATTCCC
TTTTTTTTTAATTTTCCCTCCAATCCCCCACCTCCTTTTTCTATTCCCAT
TTTACTTTTTCTTTTCTCCTTTTCCCTTACTATTCCCTTTTTTTTATTCC
CCCCCTAAATTTTTCATCACATTATTTTTTCTTTCTTTTTCTAATACTAC
CACTCACAATTTTCTTTCCTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_a09.b1 MSMg01no047_a09.b1 CHROMAT_FILE:
MSMg01no047_a09.b1 PHD_FILE: MSMg01no047_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:18 2005
         (637 letters)



>mm_chr19_13930987_13932026
          Length = 1040

 Score =  853 bits (441), Expect = 0.0
 Identities = 589/639 (92%), Gaps = 7/639 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttttc-actgtattattctaacagaaccaatttctagctcattttatatacc 62
           ||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 ggaattc-ttttctactgtattattctaacagaaccaatttctagttcattttatatacc 262

                                                                       
Query: 63  agccac-ttgtattataagaaagtatatttatgacttaggttggccatctgactaaccta 121
           |||||| || ||||  |||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct: 263 agccacattctattgcaagaaaatatatatatgacttaggttggccatctgaccaaccta 322

                                                                       
Query: 122 cctgctttctacaaaatgcttaaacaaacatgtattagttccaaatcagaccaaatgaac 181
           ||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||
Sbjct: 323 cctgctttctacaaaatgcttaaacaaacacatattagttctaaatcagaccaaatgaac 382

                                                                       
Query: 182 tcagatgtaatatccgaccaggcacttatgacataactacctcatccctaaaatcctgag 241
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcagatgtaatatcccaccaggcacttatgacataactacctcatccctaaaatcctgag 442

                                                                       
Query: 242 aagaaactagctccaaagttacatctatgcaaactaagaaagataactacagagagaatc 301
           ||||||||||||||||||||||||| ||| |||||||| || ||||||| | ||||||||
Sbjct: 443 aagaaactagctccaaagttacatccatgaaaactaaggaatataactatacagagaatc 502

                                                                       
Query: 302 tggtctttgccattagaacttataactaaataatgccatgtctatccaggaagttgaagt 361
           ||||| |||||||| ||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct: 503 tggtccttgccattggaatttgtaattaaataatgccatgtctatccaggaagttgaagt 562

                                                                       
Query: 362 cttgtatgggatacaaaggtaagaatggttcactcttgtggataactcctgctttgtttt 421
           ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||
Sbjct: 563 cttgtatgggatacaaaggtaagaatggttcactcttgttgatgcctcctgctttgtttt 622

                                                                       
Query: 422 tatgttgaggaaagattctattcatcactaagtcaactttt-ggaaagctctcaattttg 480
           ||| |||||||| ||| |||||||| |||| ||||| |||| |||||||||||| |||||
Sbjct: 623 tattttgaggaaggatcctattcataactatgtcaa-ttttaggaaagctctcagttttg 681

                                                                       
Query: 481 ttgtgaaattgaaatgaata--tatgatgtgtttagcatttccttatttcaaagcaagat 538
           ||||||| ||||| ||||||  || |||||||||||||||||||| ||||||||||||||
Sbjct: 682 ttgtgaagttgaattgaatacttacgatgtgtttagcatttccttgtttcaaagcaagat 741

                                                                       
Query: 539 ctcaatacagattctgttacatattgaggtattaattccagtagagtgaacaatattaac 598
           ||||||||||||| ||||||||||||| | |||||||||||||| ||| |||| ||||||
Sbjct: 742 ctcaatacagattttgttacatattgaagcattaattccagtagcgtggacaacattaac 801

                                                  
Query: 599 attgttgtactctttcagtgtccctaatgaaactcaaac 637
           ||||||| |||||||| ||||||||||||||||||||||
Sbjct: 802 attgttgaactctttctgtgtccctaatgaaactcaaac 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1040
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1030
Effective search space:   645810
Effective search space used:   645810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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