Query= MSMg01no049_f22.b1 MSMg01no049_f22.b1 CHROMAT_FILE:
MSMg01no049_f22.b1 PHD_FILE: MSMg01no049_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:19 2005
(507 letters)
>mm_chr19_55868504_55869410
Length = 907
Score = 919 bits (475), Expect = 0.0
Identities = 499/507 (98%)
Strand = Plus / Minus
Query: 1 acccccacgtgaaaggtaaatggactcatgcctcatctttaacaatctccttaattacct 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 707 acccccacgtgaaaggtaaatggactcatgcctcatctttaacagtctccttaattacct 648
Query: 61 aaaagaagaatagcccgtgctccagagcaggctgggaagtcctttcatctctccctcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aaaagaagaatagcccgtgctccagagcaggctgggaagtcctttcatctctccctcaag 588
Query: 121 gctctccccatgtagccgcaacaggttttcttaaatgtatgaaaggttcggtccaggaat 180
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gctctccccagggagccgcaacaggttttcttaaatgtatgaaaggttcggtccaggaat 528
Query: 181 gctatctttaattcaccatcctctaaggagcatgaaccgagaagcaaagcaaacttgaca 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 527 gctatctttaattcaccatcctctaaggagcgtgaaccgagaagcaaagcaaacttgaca 468
Query: 241 atggccctttacagctttaagcacagacgaaagtgaagaccctgccagccaagtcacgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atggccctttacagctttaagcacagacgaaagtgaagaccctgccagccaagtcacgtg 408
Query: 301 gccacctggctggactgggaggagagcaatacctcccccaggggagccactttcagggag 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggcacctggctggactgggaggagagcaatacctcccccaggggagccactttcagggag 348
Query: 361 catttcctctgtgcccagggtgtgtccccagagtttaagagaatccctccctggaaattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 catttcctctgtgcccagggtgtgtccccagagtttaagagaatccctccctggaaattg 288
Query: 421 gccgcttgtatttcctaatgagtttctacaaggcctggtctgctggtggcaggagatgcc 480
|| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 287 gcagcttgtatttcctaatgagtttctacaaggtctggtctactggtggcaggagatgcc 228
Query: 481 tttcctacaatggatatatgtactgaa 507
|||||||||||||||||||||||||||
Sbjct: 227 tttcctacaatggatatatgtactgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_f22.g1 MSMg01no049_f22.g1 CHROMAT_FILE:
MSMg01no049_f22.g1 PHD_FILE: MSMg01no049_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:19 2005
(425 letters)
>mm_chr19_55715036_55715862
Length = 827
Score = 677 bits (350), Expect = 0.0
Identities = 409/430 (95%), Gaps = 5/430 (1%)
Strand = Plus / Plus
Query: 1 acagtccggggccatctgcccagggtggcaccactc-acaatggttcgggcaccttccat 59
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 198 acagtccggggccatctgcccagggtggcaccactcaacaatggttcgggcgccttccat 257
Query: 60 atagatcattaatcaaggaactga--ccccctcccctctgaacgtgcctacaagccaatc 117
|||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 258 atagatcattaatcaaggaactgaccccccctcccctgtgaacttgcctacaagccaatc 317
Query: 118 tgacggagtcatgttctcaggagccattacctttcttcttggcttgtatcaagttgaccc 177
||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct: 318 tgacggagtcatgttctcaggggccattgcctttcttcttagcttgtatcaagttgacaa 377
Query: 178 acaagaaaaaagg--aaataaaaaaaagccaaaaccagcaacctaatcttcacacggaca 235
| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaaagaaaaaaggaaaaaaaaaaaaaagccaaaaccagcaacctaatcttcacacggaca 437
Query: 236 actggttgagctaagagagagtgggaccaggtgggagcggctttctaaactcagggctac 295
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 438 actggttgagctaagagagagttggaccaggtgggagcggctttccaaactcagggctac 497
Query: 296 tgccctgtttctagaccttgggcatagctttccttccttgcctcactcttctgtaggcga 355
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 498 tgccctgtttctagaccttgggcatagctttccttccttgcctctctcttctgtaggcga 557
Query: 356 aaaattccttttgcaacgatcccagtctgaaacatttaaactgcgcgagccttggaggaa 415
|||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 558 aaaattccttttgcaatgatcccagtctgaaacatttaaactgtgtgagccttggaggaa 617
Query: 416 tcctgcccag 425
||||||||||
Sbjct: 618 tcctgcccag 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 827
Length adjustment: 9
Effective length of query: 416
Effective length of database: 818
Effective search space: 340288
Effective search space used: 340288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
