Query= MSMg01no049_n21.b1 MSMg01no049_n21.b1 CHROMAT_FILE:
MSMg01no049_n21.b1 PHD_FILE: MSMg01no049_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:20 2005
(356 letters)
>mm_chr19_55711944_55712699
Length = 756
Score = 567 bits (293), Expect = e-166
Identities = 338/359 (94%), Gaps = 14/359 (3%)
Strand = Plus / Minus
Query: 5 gaattctagtcttttgcaggacccct--t-tattttcttaactgccgagccatttttagc 61
|||||||||||||||| |||| || | ||||||||||||||||||||||||||||||
Sbjct: 453 gaattctagtcttttgaagga---ctggtatattttcttaactgccgagccatttttagc 397
Query: 62 ccccagacctaatatgttgta----ccccatagattttagtgcgggcacttgagccttga 117
| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 396 ctccagaaagaatatgttgtaatag----atagattttagtgcgggcacttgagccttga 341
Query: 118 gcttggcacatgtcctgtcactgccagcccttggttctgtgagacggtctcctgtgtaga 177
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 340 gcttggcacatgtcctgtcactgccagcccttggttctgtgagatggtctcctgtgtaga 281
Query: 178 tcacgctggccttctctctgcttgtctctgactctgaccgaaggcgcctcccttgcctgt 237
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 280 tcacgctggccttctctctgcttgtctctgactctgaccgaaggcacctcccttgcctgt 221
Query: 238 cccaagagttccaacagtttcctcctataaagtcctttccttcatgagacaggctctctc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 cccaagagttccaacagtttcctcctataaagtcctttccttcatgagacaggctctctc 161
Query: 298 aggctggccttgttctcaagatccccctgcctcagccgcctcagtgtggggattataag 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 aggctggccttgttctcaagatccccctgcctcagccgcctcagtgtggggattataag 102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_n21.g1 MSMg01no049_n21.g1 CHROMAT_FILE:
MSMg01no049_n21.g1 PHD_FILE: MSMg01no049_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:20 2005
(339 letters)
>mm_chr19_55582850_55583585
Length = 736
Score = 435 bits (225), Expect = e-126
Identities = 306/345 (88%), Gaps = 30/345 (8%)
Strand = Plus / Plus
Query: 1 taatatccaaaaatgaaattaacatgtttcttaagttacagactctgaggttgtgattct 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 201 taatatccaaaaatgaaattaacatgtttcttaagttacagactttgaggttgcgattct 260
Query: 61 tcattttaaattgtccctgacattgcttgacaagatggcagcaagcatgaaaggaggagc 120
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 tcattttaaattgtctctgacattgcttgacaagatggcagcaagcgtgaaaggaggagc 320
Query: 121 agcctccccccacccccaaaggtctttataaaagattttgaagaaaaaaaaaaaaacaaa 180
||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 agcctcccccc---cacaaaggtctttataaaagattttgaagaaaaaaaaaaa--caaa 375
Query: 181 aacaaaaacaaaaaaacaaaccaaaaaaaaaa--aaaaacaaaaaaa-accaaaaaccaa 237
| ||||| ||||||| |||||| ||| ||||||||||||| || ||||||
Sbjct: 376 a-caaaa-caaaaaa------caaaaactaaaccaaaaacaaaaaaacac-aaaaac--- 423
Query: 238 aaaaaacaaacttatttggcaaagttatgttaaaaaaaaattttataaaaagaaaagg-- 295
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 424 aaaaaacaaacttatttggcaaagttatgttaaaaaaaaa------aaaaagaaaagaaa 477
Query: 296 -gaaaaaaaaaaaaaacgctttaaacctggcatgtgaatatcaat 339
||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 478 agaaaaaaaaaaaaaa-gctttagacctggcatgtgaatatcaat 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 736
Length adjustment: 9
Effective length of query: 330
Effective length of database: 727
Effective search space: 239910
Effective search space used: 239910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
