Query= MSMg01no050_o04.b1 MSMg01no050_o04.b1 CHROMAT_FILE:
MSMg01no050_o04.b1 PHD_FILE: MSMg01no050_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:47 2005
(477 letters)
>mm_chr19_30443745_30444620
Length = 876
Score = 826 bits (427), Expect = 0.0
Identities = 452/463 (97%), Gaps = 5/463 (1%)
Strand = Plus / Plus
Query: 16 ggaattcatcacacgagtctctagacggataaccgctaggg--aaaagatccaggcagta 73
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 216 ggaattcatcacacgagtctctagagggataaccgcta---ttaaaagatccaggcagta 272
Query: 74 cactaactataagcttggctgaattaactacagcttttgtcaacaaagacagcagtttct 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cactaactataagcttggctgaattaactacagcttttgtcaacaaagacagcagtttct 332
Query: 134 ttttttaaaaaaaattattcttctttctccacatcctcgccaacatgtgctgtcacctga 193
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 333 tttttaaaaaaaaattattcttctttctctacatcctcgccaacatgtgctgtcacctga 392
Query: 194 gttttaggtattagtcattctgcttggtgtgaggtggaatctcagggtcatttgatttgc 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gttttaggtattagtcattctgcttggtgtgaggtggaatctcagggtcatttgatttgc 452
Query: 254 atttccctgatcactaaggatggtgaacatttctttaagcgcttctctgtcattcgagat 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atttccctgatcactaaggatggtgaacatttctttaagcgcttctctgtcattcgagat 512
Query: 314 tcctcttttttgaattctctgtttagttctataccccatttttaaattggattgtttgtt 373
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcctctgttttgaattctctgtttagttctataccccatttttaaattggattgtttgtt 572
Query: 374 ttttttggaggttagcttcttgagttctttatatattttggatattagcctttcttggat 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttttttggaggttagcttcttgagttctttatatattttggatattagcctttcttggat 632
Query: 434 gtgggggttggtgaagatttttttcccnntatgtaggttgtca 476
||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 633 gtgggggttggtgaagatttttttcccaatatgtaggttgtca 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space: 404422
Effective search space used: 404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_o04.g1 MSMg01no050_o04.g1 CHROMAT_FILE:
MSMg01no050_o04.g1 PHD_FILE: MSMg01no050_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:47 2005
(666 letters)
>mm_chr19_30467977_30469045
Length = 1069
Score = 1181 bits (611), Expect = 0.0
Identities = 649/669 (97%), Gaps = 13/669 (1%)
Strand = Plus / Minus
Query: 1 tatttgctattacagaattaacatttatttattttctcactatagaaaatttataccact 60
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1011 tatttgttattacagaattaacatttatttgttttctcactatagaaaatttataccact 952
Query: 61 tatcttactaggtctatggagcttatacttcttcagctctccaacacactgttctatata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 catcttactaggtctatggagcttatacttcttcagctctccaacacactgttctatata 892
Query: 121 tttaagagacacatatattgcaaaaaaaaaccaaaaagtccttaactttacctttgtttc 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 891 tttaagagacacatatattgca----------aaaaagtccttaactttacctttgtttc 842
Query: 181 cagaca---tttttttttaacagagaggtttgagttcagttattaaatgaatgtcctgaa 237
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cagacatctttttttttttacagagaggtttgagttcagttattaaatgaatgtcctgaa 782
Query: 238 tctatatttttgtaggaaacatttccttctttttaatttcttaatcttcctattctaatt 297
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tctatatttttgtagaaaacatttccttctttttaatttcttaatcttcctattctaatt 722
Query: 298 tggacaaatgagccagtctgtacccagggtcagtatgccttttcctctggtgccccttgc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tggacaaatgagccagtctgtacccagggtcagtatgccttttcctctggtgccccttgc 662
Query: 358 ttgcgggaatgaccattcaaggaggtgttcctccacactcctgtctgcagttccttcagt 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 661 ttgcgggaatgaccattcaaggaggtgttcctccagactcctgtctgcagttccttcagt 602
Query: 418 tggctgtaatctctgctgtttctgcagctgggatggaaaacagctggctaccagctccct 477
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tggctgtaatctctgctatttctgcagctgggatggaaaacagctggctaccagctccct 542
Query: 478 cgcattgctccctagtttgacatagcagaaaatcatagaagaggcaaggtgattaaaaca 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cgcattgctccctagtttgacatagcagaaaatcatagaagaggcaaggtgattaaaaca 482
Query: 538 agataaatatgccagaagaagaaagaaggaaaatacctcaggataatttgggtgtgaaaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agataaatatgccagaagaagaaagaaggaaaatacctcaggataatttgggtgtgaaaa 422
Query: 598 actcccctttgaacttccttcagggtgcctctggggactgcgtataatggggctaggtat 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 actcccctttgaacttccttcagggtgcctctggggactgcgtataatggggctaggtat 362
Query: 658 ttgtggtta 666
|||||||||
Sbjct: 361 ttgtggtta 353
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1069
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1059
Effective search space: 694704
Effective search space used: 694704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
