BAC Information

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BAC

Clone NameMSMg01-050O23
Chromosome19 (Build37)
Map Location 27,517,031 - 27,517,451
singlet/doubletsinglet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e
Downstream geneLOC667868, LOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050O23.T7 (MSMg01no050_o23.b1)MSMg01-050O23.TJ (MSMg01no050_o23.g1)
ACCAG279860AG279861
length1,1951,209
length of high quality
(start - end)
408 (114 - 521)279 (113 - 391)
definitionCHROMAT_FILE: MSMg01no050_o23.b1 PHD_FILE: MSMg01no050_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:54 2005CHROMAT_FILE: MSMg01no050_o23.g1 PHD_FILE: MSMg01no050_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTGGGGCTAACGATTCATATAGGGAGAGGATCCGCGGAATTCTGGGCAG
CAGGCCAAACCATTAAGGCATTCTTTGGGGTCCTTTCCTGTGGGCTGCCA
CCTTTAAGGAGTGGCCCAGACCTAGGGGAGTCTTTCTCATCCACTTATCT
AAGAAACTCCCTCCCAGGAGCACTCCCCAGCTTGGGTTTCAGTCGCTTCC
CATCTGACAACCAAGATTAGCCACTGCATCACCGTAAACCGGGAGCCAAT
ACAAACCTCTCCTCTCCTAGGTTGTTTCTGTAGGGCATCACAGTACATGG
ACAAAAAGCGTAATTGAAAGCTTCCAAATGCCTGAGCCACTGACTGCTCT
GGCAAGAGTATTTTCATCAGACATCCTAGCCCACGGATAGTGATTTGTTT
AGCAACTTAGCAGCCACGCTGCCCTCTGGACCATGTGTGCCCCATATTCA
GTTTGGATTGTGGTCCTCCTTGCCCAGTGGTAGTGAATGGGTCCCTCTCA
GAATTCCATCCTGCTTCCAACGTCGTGGAACCATGTTTGGTACCAGTTCT
GTTAGCTTGTCTGTTGCAATAAGTGGAAATAAAAGGCTATAAAGGTTATA
AAAGAAATAGCCTGTGGAAGAGAAAGGATGACAGAGGCTAAGAGAGAGCC
TCTGTTAGGATTGTGTGGACTTCTGGGGAAAGGTTTTGGCTAAGCTGTTG
GTGGAGGGCAGGGACTCCTCTAAACTCCTACTGTGAATAGGTACAATCCC
CCATCCCACGTAACCTTTTTACAAACTTTAAATATTCCCTTATCGTCCAA
GGGTTGCAATAACTTTGGCCCCTATATTCCTCCAGTTCTTAATCCCAGAT
CAATGTAGACTTCCTGTAATGGCCTTAATGGCCCTGGTTCAGGTCAACCT
GGACCGTTTCCTAGTTTTGGGTGGGAAAATCAAATTGGCTATGTCTAACT
TCATAGGTCAATAATTAATTTTTTTTCCCCTTCCTTTTGTCTTTTCTTTT
AAAATTTGGCTAAATCCGGGGTCGGGGCTATAAATTAATGGTTTGTGTTC
CCCCTGGTAAACCCTCAATTTTCAGTGAATAGGTCCCTGGTATATTTAAT
ATAAAAATCTTCCCTATACCCCATAATACCTCTAAAATTTTTTTTTATAA
AATTCTCTTCTACCAGCCTTCCGATTGGTGCAATCTTCTTTCCTA
ATATGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCCTTTAATGAGCAATACCGAATGGCTGAGGAGCAACTGA
ACCCTTGTAAAGCATCCTTAACCATCAGGGGAATGCAAATCAAAACAACC
CTGTGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGACTGCAAGCTTGTACAACCACTTTGGAAATCAGTCTGGCGG
TTCCTCATAAAATTGGACATAGTACTACTGGAGGATCCCGCAATACCTCT
CCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGTT
CCACTATGTTTAAGACAGCCTTATTTATAATAGCCAGAAGCTGGACAGAT
GCCCCTCAACAGAGGAATGGATACAGACAATGTGCTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAACGAATTTATGAAATTCCTAGGCAA
CTGGATGGACCTGGAGGGCATCATCCTGAGTAAGGTAACCCAGTCACAAA
AGAACTCATACAATATGTACTCACTGATAAGTGGATATTAGCCCCAGAAT
CTTATAATACCTATACATATAAGATACAATTTGCAAAACACTTTGAACTC
TAGATTAATGAAGATCATCATGTGGACACTTTGCCCCCTTCTTACTAACT
GGGATCCACACACCCTTGGAAGGAGTTACCGAATACAAAGTTTTGTAGCT
TGTGATCAAAGGATGGAACCATTCTAGATACTGTCATATTCCGGAGAATT
CCATCCCCATAATCATCATCCCAAACACTTGGACCCCATTTGTTTACTTT
TCCCATTGATTTTCCTTTGAAATGCACCCCTGGAATAAATACTTTTTTCT
TTTTATATAGGTTTTTTTTCTGTGTGTCCTATAATATAAACCCCTTAATA
TGTGAATGTTTTTCCCCGTTTTCGCCTTTATTGGTAAGGGGAATTCATCA
GGGGTCCCCCCTTAATGGTAAGTGAACCCTTTCAAGTATAAATTCTCCCC
CAATGGTCCTCTTTAATAGAGGATAATTCTCCCATACTCCCCAATTTAAT
GTGGTGGAAATCTACATCCCATATAATTGCTTATCCCTAAACCTCTTATT
CTCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_o23.b1 MSMg01no050_o23.b1 CHROMAT_FILE:
MSMg01no050_o23.b1 PHD_FILE: MSMg01no050_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:54 2005
         (408 letters)



>mm_chr19_27516831_27517639
          Length = 809

 Score =  663 bits (343), Expect = 0.0
 Identities = 396/421 (94%), Gaps = 13/421 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcccagacctaggggagtctttctcatccacttatctaagaaactccctcccaggagcac 60
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcccagatttaggggagtctttctcatccacttatctaagaaactccctcccaggagcac 260

                                                                       
Query: 61  tccccagcttgggtttcagtcgcttcccatctgacaaccaagattagccactgcatcacc 120
           ||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tcagcagcttgggtttcagtcgcttcccatctgacaaccaagattagtcactgcatcacc 320

                                                                       
Query: 121 gtaaaccgggagccaatacaaacctctcctctcctaggttgtttctgtagggcatcacag 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gtaaatcgggagccaatacaaacctctcctctcctaggttgtttctgtagggcattacag 380

                                                                       
Query: 181 tacatggacaaaaagcgtaattgaaagcttccaaatgcctgagccactgactgctctggc 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatggacaaaaagcataattgaaagcttccaaatgcctgagccactgactgctctggc 440

                                                                       
Query: 241 aagagtattttcatcagacatcctagcccacggatagtgatttgtttagcaacttagcag 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 aagagtattttcatcagacatcctagcccacggatagtgatttgcttagcaacttagcag 500

                                                                       
Query: 301 ccacgctgccctctggaccatgtgtgccccatattcagtttggattgtggtcctccttgc 360
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatgctgccctttggaccatgtgtgccccatattcagtttggattgtggtcctccttgc 560

                                                                       
Query: 361 c-cagtg------------gtagtgaatgggtccctctcagaattccatcctgcttccaa 407
           | |||||            |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 cacagtgaatggcaaggaggtagtgaatgggtcactctcagaattccatcctgcttccaa 620

            
Query: 408 c 408
           |
Sbjct: 621 c 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space:   319200
Effective search space used:   319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)