BAC Information

Click to search

BAC

Clone NameMSMg01-051N01
Chromosome19 (Build37)
Map Location 51,744,906 - 51,745,267
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs1, LOC100042924
Downstream geneLOC100042928, LOC668536, LOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051N01.T7 (MSMg01no051_n01.b1)MSMg01-051N01.TJ (MSMg01no051_n01.g1)
ACCAG280468AG280469
length1,2921,371
length of high quality
(start - end)
368 (32 - 399)72 (120 - 191)
definitionCHROMAT_FILE: MSMg01no051_n01.b1 PHD_FILE: MSMg01no051_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:02 2005CHROMAT_FILE: MSMg01no051_n01.g1 PHD_FILE: MSMg01no051_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCATCAGTGGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGA
ATTCATGTCCACCATAAAGCTTGTTATCTGAGGTAGCCACTTTCTCAATA
GCAACTGGAAAACTTCTTATTTCTCCTTGTTCCCTTAGGTTTCTTTTATA
CAAGAAAACTCCATGAAGTAGAGTCAATAATGAAATAAAATAGTGTCTAA
TCCACTCTACTCCCTAGTGGCAGCAGTACTCGCTCCTTGATAGCTACCCC
AATGCTCTGAATTCTTGAATGAAACACACACACACACACACACACCCACA
CACGACCTTTTATTTAATTTGCCTTAAACAGTTCAATGGCTAGACCACTC
ATAAACTTCCACATTGCTAACACCTCTACTCCAATACTCATGAATTATTA
CTTTTTTTAAAACCTATATTCCATCTTTGCTACCCTGGACCAAGACCTGC
ATTTTTTTTGGGCCCTGATCCCACATGGTTACACGTTGACAAAAAAGAGT
GTCTTTCTGTGCTCCATTTCTCAGGCCTGGACCTTCTGACTCTCCAAGCA
ATGGCGATTCATCTTCTTCCTCAGTCTTTTGCCCATGAATCCTAAAGTGC
CTCCTGTGTCTCCCTGCCCAGTCATTGGTCACTCGTAATTTTATTTACCA
TCTAAGCCATTTGTTTTTCATGGATCCTTATCACCTTACAGTTATATGTT
GTATTTTCCCCTGTCAATTTTTTTTCTTCTGAATTTCTTTCTATTTATCA
CTTATTATTTTATTTTTTTCTAGTACTATGTTTTTTTTTTTTTCTGTTTA
TGTTTATATCTATTTCTTTTTTTTTGATTCTCCATACCTCTGTTTTAATT
TCTCTTTTGATTAATTTTTTTCTTTAATTTCCCCTTCTTTTTTTTTATAT
TTTCTCTTCTTTTTATTTTTGTTTTTTTTAATATCTACTCTTTTTTTTCA
TTATTTTTATTTATTCTTTTTTTCTTTTTTTCTTTTTTTATTCCTTTTCT
TAACTTTATATCCTTTTCTTTTTTCTCTTTTTTTTTTTCTATTCGTCTCT
TTTTCTTTTTTACCTTCTCTATTTTCCCTCTATATTTTTTTTTACTTAAT
ATTACTCATTTATTTATTTTTCTACCTTTACTTTATTATTCTCATATTTA
TTCTCTTATTCTACTAATATTTTACTCCTTTTTTTATATCACTGGCTTAT
TCTCTCTCATTAGCATCTATACTCTATCAACTCCTTTCATCTTTGATATA
TCTTCTATCTCACCTTCTCTCTTATACTCTATCTAATTATTC
NNTTTAAGTTTGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTTGATGCCAGAGTGGCCTCCAGGAAAGCAA
ACAGAGTTGTGGGCTGGAAAATGAAATCTACCTGTGGGGGTGCAGTTTTA
AGGTTGTTGGATGCATTTAAGGATAATTTGGGAGCCAGGGGCTTGACGGT
ATGGAGGCTTACCTGGTTGTCCTTAGTGTCTACAAGTGTCTGGTATAATT
GTCACCTATAAAATGGATCACAGGTGACAGGTTACAGCTTTCCTTTATCG
GTCGTGCTTTTAACGCAGCTTGTTCTTTTAATTCTCGTCTTATTCTCTTA
CTTGATTTGTTCCTGATTCCATTTCTTATTTTTTCTATGTTTTTTATTTT
TTTTTTTTTTCTCATTTCTCTTTTCTTCCTCTTTTTGTCTTATTCTCTCT
CTCTTTTTTTTTCTCCCTCTCCTCCCTCCCTTTTCTTTTTTCTTCTTCTC
TCTTTTTCTTCCTTCTCTTTTTTTTCTTTTTTTTTCTTTCTTTTCTTTTT
CTCTTCTCCTCTATTTTTCTTCTCTTTTCCTTTTTTTCTTCTTTTCCTCT
TCTTCTCCTCCTTTCTTCTTTCTCTTTTCTTCTCTTTTCTCTTCTCCTCT
TTATCTCTTTCTTCTTTCTCCTTTTTTCTCCTTTTCTCTTCTTTACTTTT
TTTTCTACTTTTCTTCTTTCCTCTTTCTTCTCTTTTTTTTTCTTTTTTTT
CTTCCTCTCTTCTCATTTTCTTTTTTTCCCTTTCCTCTTCTATTCTTTTT
TCTTTCTTTTTTCCCTACTTTTTTACTTTTTATTTTTTTTCTTCTCTTCT
TTTTATTTTTTTCCCCTTTTTTTTTTTCCTCTTCTTCCTCTTTATCTTTC
CTTTTTTTCCTTTATTTCTCTCTTTCTTCTTTCCTTTTCCTTCATTTACT
TTTCTCTTCTCTTTTTTTTTTTTTTTTCTTCCTTTCTTTTTTCCTCTTCT
TTCTTCCATCCCTTTCCTTTTTTTCTTTTCCCCTTCTATTCTATTCCCTT
TTCCTTTTTTCCTCTTTTTTATCTTTTTCTCTCTTTCTTCTCTTTATTCC
CTTTTCCTTCTCTCTCTCTTTCTTCTCTCTTTCTTCTTTCTCTCATTCCT
CTCCTCTTTTTATCTCTTCTTCTTCTTTCTCTCTTTTTCCTTTCTCATTC
TCTTCTCTTTTCTTTTCTCTTCTTTTATTCTCTTCTCTCTCTTTTCCTTT
TATCTCATCCTTCCTTCTTTTTTATTTTCTCTCTCTTTTCTCACTTTCTT
TCCCCCCCATTCTCTGANTCTTATTTTTACTTTTTCTTCACCGCTCTTTT
ATTTCTTCTTATCTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_n01.b1 MSMg01no051_n01.b1 CHROMAT_FILE:
MSMg01no051_n01.b1 PHD_FILE: MSMg01no051_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:02 2005
         (368 letters)



>mm_chr19_51744690_51745457
          Length = 768

 Score =  623 bits (322), Expect = 0.0
 Identities = 348/362 (96%), Gaps = 10/362 (2%)
 Strand = Plus / Plus

                                                                       
Query: 17  ggaattcatgtccaccataaagcttgttatctgaggtagccactttctcaatagcaactg 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ggaattcatgtccaccataaagcttgttatctgaggtagccactttctcaatagcaactg 276

                                                                       
Query: 77  gaaaacttcttatttctccttgttcccttaggtttcttttatacaagaaaactccatgaa 136
           ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 277 gaaaacttcttatttcttcttgttctcttaggtttcttttatacaagaaaactccatgaa 336

                                                                       
Query: 137 gtagagtcaataatgaaataaaatagtgtctaatccactctactccctagtggcagcagt 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtagagtcaataatgaaataaaatagtgtctaatccactctactccctagtggcagcagt 396

                                                                       
Query: 197 actcgctccttgatagctaccccaatgctctgaattcttgaatgaaacacacacacacac 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 actcgctccttgatagctaccccaatgctctgaattcttgaatgaaacacacacacacac 456

                                                                       
Query: 257 acacacac-c---------cacacacgaccttttatttaatttgccttaaacagttcaat 306
           |||||||| |         |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 457 acacacacacacacacacacacacacggccttttatttaatttgccttaaacagctcaat 516

                                                                       
Query: 307 ggctagaccactcataaacttccacattgctaacacctctactccaatactcatgaatta 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggctagaccactcataaacttccacattgctaacacctctactccaatactcatgaatta 576

             
Query: 367 tt 368
           ||
Sbjct: 577 tt 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)