BAC Information

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BAC

Clone NameMSMg01-052P08
Chromosome19 (Build37)
Map Location 4,393,790 - 4,394,068
singlet/doubletsinglet
Overlap geneFbxl11
Upstream geneMtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1
Downstream geneLOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052P08.T7 (MSMg01no052_p08.b1)MSMg01-052P08.TJ (MSMg01no052_p08.g1)
ACCAG281309AG281310
length687699
length of high quality
(start - end)		279 (68 - 346)240 (70 - 309)
definitionCHROMAT_FILE: MSMg01no052_p08.b1 PHD_FILE: MSMg01no052_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:43 2005CHROMAT_FILE: MSMg01no052_p08.g1 PHD_FILE: MSMg01no052_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATATTTGCGGCGCTAAACGACTCCTATTTCAAGAAAGGGGCGGAATTCT
AGATCTTCCAATAGATTAAGATTTTATGTGGTTTCATTTCTTTTAGTGAG
AAACATAGTTCTTGAATTCATTTTCTGATGATCTGATGATCTTCACTCTT
AGAGAAAAGGCTATAGATTTCTTTTATTTGCTTTTTTGAGATAGGTTCTC
CCACTTGTAGCCTTGAGTGGCCTGGAATTTGTGGCAGTCTCTCTGTCTCA
AACTCATGAATGCTAGAATTACAGGTGTGAACTACTTTACTCGATTCCTC
TTGGCTTTTTCTTTTGTTAATGTGCTTGTTAAAGAGATCTGAAGTACAAG
ATTGGAGAGACGGCTCAGTGGTTAAGAGTACTTGCTGCTCTTCCACAGGA
CTTGGTTCAATTCCCAGTATCACATGGAGGCTCACAGCTCTCTGTAACTC
TAATTCTAGAGACTCTAATATCTTCTTCTGACCTCCCGGGTACCAAACAC
ATACATGGTGCCCAAACATACATGCAGGTAAAACTCACATAAAACAAGAT
ATGTAATTCACACAAAAAGATTATTATGAATTGGCACGCATATCCAATAT
GTATGTGTTCCGTTAACCTTATTTTAGGGACTTGTTTTATATTTCCTAAC
TTCCAATATCTCTATCGAATTTATCTCACGCCCGTGG

ATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGGAGAGGTCTAGATTTGAGATATAACTTTG
GGGAAATTTCAAATGGCATTTAAGGTCAGCAAGAATGAGCTGGCACATGG
GTGCTTGATCTCCTGTAATCCCAACACTCTGGAACCGGATTCAGGACTAA
AGTTTTAAAGCCAGTCTGGCAACATAGCAAGACCTTGTCTCCAAAACGAT
CTCAGCACTCAAAAGACAGAGACAGGAAGATCTCTGTGAGTTCAAGTCCA
GCCTAGTTTATGTATAGAGTTACAGGGCTGTTAGAGCTACAAAGAGAGAC
CCTGTCTTAAAAAATCCAACCCCATTCATCAGCCAATATATTAAAAGTAT
TAAGAGAGCTGGGCAATGGTGATGAACACCTTTATTCCCAGCACTTGGGA
AGCAGGGTTAGGTTCAGGGTTACGATTAGGGCTTCTGAGTTCGAGGCCAG
CTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGACACACAGAGGAACCC
TGTCTCCTAAAACCTTTTATATCTACTAACCCTTTATCCTCCCTATAAAA
TATCTTCGTCATAAAATACATCCAAGGTCCCGCCCACCTCCCTATTTTTT
ATTCCCTTCTTAGGCGCTACAATTTATAACAATTAAACCTGTGTCGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_p08.b1 MSMg01no052_p08.b1 CHROMAT_FILE:
MSMg01no052_p08.b1 PHD_FILE: MSMg01no052_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:43 2005
         (279 letters)



>mm_chr19_4393760_4394438
          Length = 679

 Score =  532 bits (275), Expect = e-155
 Identities = 278/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagattttatgtggtttcatttcttttagtgagaaacatagttcttgaattcattttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aagattttatgtggtttcatttcttttagtgagaaacatagttcttgaattcattttctg 250

                                                                       
Query: 61  atgatctgatgatcttcactcttagagaaaaggctatagatttcttttatttgctttttt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 atgatctgatgatcttcactcttagagaaaaggctatagattttttttatttgctttttt 190

                                                                       
Query: 121 gagataggttctcccacttgtagccttgagtggcctggaatttgtggcagtctctctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gagataggttctcccacttgtagccttgagtggcctggaatttgtggcagtctctctgtc 130

                                                                       
Query: 181 tcaaactcatgaatgctagaattacaggtgtgaactactttactcgattcctcttggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tcaaactcatgaatgctagaattacaggtgtgaactactttactcgattcctcttggctt 70

                                                  
Query: 241 tttcttttgttaatgtgcttgttaaagagatctgaagta 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 69  tttcttttgttaatgtgcttgttaaagagatctgaagta 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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