BAC Information

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BAC

Clone NameMSMg01-053D18
Chromosome5 (Build37)19 (Build37)
Map Location 103,628,699 - 103,628,85218,053,003 - 18,053,194
singlet/doubletsingletsinglet
Overlap geneMapk10
Upstream geneLOC625780, Arhgap24, LOC666563
Downstream gene4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053D18.T7 (MSMg01no053_d18.b1)MSMg01-053D18.TJ (MSMg01no053_d18.g1)
ACCAG281505AG281506
length716736
length of high quality
(start - end)		154 (70 - 223)192 (76 - 267)
definitionCHROMAT_FILE: MSMg01no053_d18.b1 PHD_FILE: MSMg01no053_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:05 2005CHROMAT_FILE: MSMg01no053_d18.g1 PHD_FILE: MSMg01no053_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:05 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,628,699 - 103,628,852)(18,053,003 - 18,053,194)
sequence
CAAAATTTGCGGCGCTAAACGACTCCTATTCCAAGAGAACCGCGGAATTC
TTGTCTTCCCCATTACCCAGAATTTAACTCATCAGTGCTTTAAGGCTCCA
TTCAGGCCCAACTTTCATCTTTGTATTTAGTTCAAAGTAAAAGTCACTCA
ACTCTGCCACCACTACCGCCATAACCTGGGGAAAGTCACTAAATATTTTA
CACTTCCTTGTCACTGTTCGTGAAATCAGCGTGTTCAGAAGGGCCTCGGT
TAGTACGGGATGCTCTGGCATATACAAAGCACTTCATGCACTGTCTGGTT
ATGAGGTAGTCATCCATTATATCTGGTATCTTCATTTTACTGTGGTTTCC
CTCTTCCTGCTCTTGTCTGAGCAACTGTAATTCTCGGCTTCTAAGGATCT
CACTTCTCACAAGTCCTTGACTTCCTTTTCCTACACAAAGCAAGAGAACC
CCTAACTAGTCCTTCATACCTGCCGATTTGTTGAGCAAGCCCTTTGTAAT
TGACATCTACTCTCTGTTCCCCATTCATTTCTTTATTTAAAACTGATAAC
CACTTCTGTGATTTCTAACTTCTACTAATACGTTTTCTTTTTATCTTACC
GCCACTTCCCCTTCCATTTCCCCCTTTCTTTCCTCCGCACTATCCCTTGA
CATATCCCCCGATCCTGTATCTTATCCTTCCCCCCCATTTTTTACTTCTC
CCATCTCCCTTTAACT

ATGAACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGCAGAGCCCACTGGATGAAGTTCT
AGGACTCCTTCAGTTGCATTATTGGGCCTGGCACTCCAGTTATAGCTTTG
GGGAATGAAACCAATGGATTTTTGAACTGGAATAGGTGGCTGCTGGTTAT
CTATAGAATGGACAGCCCTATACAATGGACCCAGCTGTATTTAACTAAGG
CTCCTGGAGACTGAATGCAGCAGTATATTGAGAATCAGATTATAGCCCAG
CATGTGTAGAGATGTGCTTTATAATGGTTTGTGCCTGCACCTGCTTCATT
TTGCCCAAAGAAGAGACCTGATAGCTGGCCCAGGATAGGAAGCCCTGAAT
ATTTCAGGAGTGGAGAATATAAAGAAGTCCAGTTGAACTCTTGGCTTTTA
TGATCCATATACAAACTCCGAATATGAGATAAAAGTTAATTTGATCCTGT
CTGACATTTTCTCATTGACAAAAATATCGCACGCACTTTTGTTACATATG
ACCATACCATATGATATTATCTCTTCCTACCAATATCACGGATTTTGTTT
TGTTGACACCCCCCCCCTTCTATTACCCCCGTATATTTCCCTTGCTCATC
TCATTTCCGCCTTGTTTTACTCCCCACCTTTTCATGATTACTTTTATCTT
ACTCCCCCCCACCCTATCCCCGCTTTTCATTAGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_d18.b1 MSMg01no053_d18.b1 CHROMAT_FILE:
MSMg01no053_d18.b1 PHD_FILE: MSMg01no053_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:05 2005
         (154 letters)



>mm_chr5_103628499_103629052
          Length = 554

 Score =  290 bits (150), Expect = 2e-83
 Identities = 153/154 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatttaactcatcagtgctttaaggctccattcaggcccaactttcatctttgtattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatttaactcatcagtgctttaaggctccattcaggcccaactttcatctttgtattta 260

                                                                       
Query: 61  gttcaaagtaaaagtcactcaactctgccaccactaccgccataacctggggaaagtcac 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gttcaaagtaaaagtcactcaactctgccaccactactgccataacctggggaaagtcac 320

                                             
Query: 121 taaatattttacacttccttgtcactgttcgtga 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatattttacacttccttgtcactgttcgtga 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no053_d18.g1 MSMg01no053_d18.g1 CHROMAT_FILE:
MSMg01no053_d18.g1 PHD_FILE: MSMg01no053_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:05 2005
         (192 letters)



>mm_chr19_18052803_18053394
          Length = 592

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagagcccactggatgaagttctaggactccttcagttgcattattgggcctggcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagagcccactggatgaagttctaggactccttcagttgcattattgggcctggcact 260

                                                                       
Query: 61  ccagttatagctttggggaatgaaaccaatggatttttgaactggaataggtggctgctg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ccagttatagctttggggaatgaaaccaatggagttttgaactggaataggtggctgctg 320

                                                                       
Query: 121 gttatctatagaatggacagccctatacaatggacccagctgtatttaactaaggctcct 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 gttatctatagaatggacagccctatacaatggatccagctgtatttaactaaggctcct 380

                       
Query: 181 ggagactgaatg 192
           ||||||||||||
Sbjct: 381 ggagactgaatg 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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