Query= MSMg01no054_d02.b1 MSMg01no054_d02.b1 CHROMAT_FILE:
MSMg01no054_d02.b1 PHD_FILE: MSMg01no054_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:19 2005
(479 letters)
>mm_chr19_50155723_50156601
Length = 879
Score = 833 bits (431), Expect = 0.0
Identities = 467/479 (97%)
Strand = Plus / Plus
Query: 1 cctgaccaagttggttgtatcctaatgatcatccaacatatgaaaatctgtaaatataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgaccaagttggttgtatcctaatgatcatccaacatatgaaaatctgtaaatataga 260
Query: 61 acacataaagaacacttatgaatgggtatcacatgataacaataaataaaaataggactt 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 acacataaagaacacttatgaatgggtatcacatgatcacaataaataaaaataggactt 320
Query: 121 taagaaagattagtacttcttcagaataaaagtcctaaaggaaagaatggaaggcaagtg 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagaaagattagtacttattcagaataaaagtcctaaaggaaagaatggaaggcaagtg 380
Query: 181 tctcaagatagtaagagctgtatataatgaacatttataatcatggggagagagactgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tctcaagatagtaagagctgtatataatgaacatttataatcatggggagagaaactgaa 440
Query: 241 gtaattatttctgaaactaagaacaagacaaatggtggactccctttgtacttctgtcca 300
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gtaattatttctgaaactaagaacaagacaaatggtggactccctttgtatttctgtccg 500
Query: 301 gggtgtggtcttagcaatagcaatgagtcaaacagaaaatgcaaacaggacagagagaac 360
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtgtgatcttagcaatagcaatgagtcaaacagaaaatgcaaacaggacagagagaag 560
Query: 361 tcactctcctgtactcaatgaccctaacagctcaaacaggaaagttcttaggcctgataa 420
||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 561 tcagtctcctgtactcaatgaccctaacagctcaagcaggaaacttcttaggcctgataa 620
Query: 421 atacttcatatcaagaagcatgtaagtaatgaagctagaaccacgtttcccacaacaca 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtacatcatatcaagaagcatgtaagtaatgaagctagaaccacgtttcccacaacaca 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_d02.g1 MSMg01no054_d02.g1 CHROMAT_FILE:
MSMg01no054_d02.g1 PHD_FILE: MSMg01no054_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:19 2005
(543 letters)
>mm_chr19_50290136_50291078
Length = 943
Score = 611 bits (316), Expect = e-179
Identities = 346/356 (97%), Gaps = 1/356 (0%)
Strand = Plus / Minus
Query: 189 tctcttctgcatgtggccttgtaaaaactcgatctcataacaactgagaccaaaaggtat 248
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 943 tctcttctgcatgtggccttgtaaaaactcaatctcataacaactgagaccaaatggtat 884
Query: 249 ttaccagaagctgggagaacaagagatggatgggttgctaagaagcaaatgtcaatcaaa 308
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 883 ttaccagaagctgggagaacaagcggtggatgggttgctaagaagcaaatgtcaatcaaa 824
Query: 309 tgatgcaacattttaaatagtctgg-aaaaaaatgttatagtcatccactgtactgcatg 367
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 823 tgatgcaacattttaaatagtctggaaaaaaaatgttatagtcatccactgtactgcatg 764
Query: 368 ttgaccatagttaacgataacacacattaatataaaatatacttgaaactagcttttact 427
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttgaccatagttaacaataacacacattaatataaaatatacttgaaactagcttttact 704
Query: 428 tattacttttgttcgttgacaattttgtacatgcatatgccttacttattctcttctgtt 487
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 703 tattacttttgttcattgacaattttgtacatgcatatgctttacttattctcttctgtc 644
Query: 488 gtcctgtcctctcttccctctaccacacctaccagccctcccctccccatttctaa 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atcctgtcctctcttccctctaccacacctaccagccctcccctccccatttctaa 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
