Query= MSMg01no054_d17.b1 MSMg01no054_d17.b1 CHROMAT_FILE:
MSMg01no054_d17.b1 PHD_FILE: MSMg01no054_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:22 2005
(542 letters)
>mm_chr19_56819243_56820185
Length = 943
Score = 891 bits (461), Expect = 0.0
Identities = 526/553 (95%), Gaps = 12/553 (2%)
Strand = Plus / Minus
Query: 1 cgctttggatctcatctgttttatatcccgagtcttatccattacccaacgcgtgtttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 670 cgctttggatctcatctgttttatatcccgagtcttatccattacccaatgtgtgtttgg 611
Query: 61 agggtgttggatactggggacactgtgaaacattctgtaaccttcgacccactgaaagaa 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 610 agggtgttggatactggggacactgtgaaacattctgtaacctttgacccactgaaagaa 551
Query: 121 gcccaagctgtcagagccatccaaccaagagcagtttgcaccagatagccaggtgggggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gcccaagctgtcagagccatccaaccaagagcagtttgcaccagatagccaggtgggggc 491
Query: 181 actgctgagagggtggtctgccttcagtccctgagaaggactgtctgagtgacaggcagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 actgctgagagggtggtctgccttcagtccctgagaaggactgtctgagtgacaggcagg 431
Query: 241 agacatatttatctcgggacagaggctaagaagcaggcccaagaggaatgttctgagagg 300
||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 430 agacagaagcatctcgggacagaggctaagaagcaggcccaagaggaaggctctgagagg 371
Query: 301 gccaggccctctcccaactctttatgtgggacaagctgttcgacctttctaaacctcggt 360
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 370 gccaggccctctcccaactctttatttggggcaagctgttcgacctttctaaacctcggt 311
Query: 361 ttccccatcccgc-aaatgtggaagcacagaacttatctcgtgttctcttccctt-gggt 418
||||||||||| | |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 310 ttccccatccc-caaaatgtggtagcacagaacttatctcgtgttctcttcccttctggt 252
Query: 419 actgggaggcacagggctgtcagtgaggagctaaggaaaccgagaagagc---------t 469
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 251 actgggaggcacagggctgtcagtgaggagctaaggaaaccgagaagagctagctattgt 192
Query: 470 ttcaaagcagtctccctctgaggtgcaccgcagtcctgagacagtgttctctatttccca 529
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 191 ttcaaagcagtctccctctgaggtgcgcctcagtcctgagacagtgttctctatttccca 132
Query: 530 tcccagtggcaag 542
|||||||||||||
Sbjct: 131 tcccagtggcaag 119
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space: 496356
Effective search space used: 496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_d17.g1 MSMg01no054_d17.g1 CHROMAT_FILE:
MSMg01no054_d17.g1 PHD_FILE: MSMg01no054_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:22 2005
(595 letters)
>mm_chr19_56656163_56657157
Length = 995
Score = 1006 bits (520), Expect = 0.0
Identities = 584/622 (93%), Gaps = 27/622 (4%)
Strand = Plus / Plus
Query: 1 cattcaggacggagtgctccacagtctcttactctgcatattgctgtggtgctctgtgtt 60
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 174 cattctggacggagtgctccacagtctcttactctgcatattgttgtggtgctctgtgtt 233
Query: 61 agttcccatcgattgcaggaggaggcttctctgtcagaatatttttaaactatcttgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 agttcccatcgattgcaggaggaggcttctctgtcagaatatttttaaactatcttgttt 293
Query: 121 caagttaatgaggtaaaatttagaaacagcgaattttattcttgctacatagatgtgtgt 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 294 caagttaatgaggtaaaatttagaaacagcaaattttattcttgctacatagatgtgtgt 353
Query: 181 ttttaatcagtgtatacaatcatgtaactgtgaccacagtcagggtcaccccaggaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttttaatcagtgtatacaatcatgtaactgtgaccacagtcagggtcaccccaggaagtt 413
Query: 241 tcctgtgggtctttgctcagtctccccatgtcaccacacatactctagccactggcagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tcctgtgggtctttgctcagtctccccatgtcaccacacatactctagccactggcagca 473
Query: 301 acagtttcgtcttcctctgaacagctctttgtgcctgact----cc-------------- 342
||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 474 acagtttcgtcctcctctgaacagctctttgtgcctgacttcttccactgaggctggtgc 533
Query: 343 ---------ttccactgaggctggtgctttcacgatcctgttgggctttgctgtctctcg 393
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 534 tctgacgtcttccactgaggctggtgctttcaccatcctgttgggctttgctgtctctcg 593
Query: 394 ttgaccgcgtggagctcatctcagttcattcagtgtctctagttgctaaaagctgtaaat 453
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttgaccacgtggagctcatctcagttcattcagtgtctctagttgctaaaagctgtaaat 653
Query: 454 acagttccacttccactaacatttctggtttctgtttgtggtaataattcactcgcttct 513
||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 654 acagtaccactcccactaacatttctggtttctgcttgtggtaataattcactcgcttct 713
Query: 514 cttgggtaaattcctagggatgaagctgacagccatgtttctccagtcccagcatgtgct 573
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 714 cttgggtaaatgcctagggatgaagctgacagccatgtttccccagtcccagcatgtgct 773
Query: 574 tgaaatcattgttctgccatag 595
||||||||||||||||||||||
Sbjct: 774 tgaaatcattgttctgccatag 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
