Query= MSMg01no055_g20.b1 MSMg01no055_g20.b1 CHROMAT_FILE:
MSMg01no055_g20.b1 PHD_FILE: MSMg01no055_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:49 2005
(591 letters)
>mm_chr19_58499881_58500871
Length = 991
Score = 1073 bits (555), Expect = 0.0
Identities = 579/587 (98%)
Strand = Plus / Plus
Query: 5 gaattcaataatccacgcaggtttctggaaatctatgcatggcagacaaaaacggtaaaa 64
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaataacccaggcaggtttctggaaatctatgcatggcagacaaaaacggtaaaa 264
Query: 65 atgcgatgcatctcattttggtcagaatggtaacctaaaatgatacaggtatacaaatat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcgatgcatctcattttggtcagaatggtaacctaaaatgatacaggtatacaaatat 324
Query: 125 caactaaaccaaaaataaacaagtaaataaatataaataaataaatataatctgagcaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caactaaaccaaaaataaacaagtaaataaatataaataaataaatataatctgagcaaa 384
Query: 185 taataaatgttacataattaataaccaaaaaattagaaaccaacaagaaataactaggga 244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 taataaatgttacataattaataaccaaaaaattagaaaccaacaaaaaataactaggga 444
Query: 245 ctgggacatacagtaatttgcaacctaggctacatatttagaatcacctgaagtttacaa 304
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 445 ctgggacatacagtaatttgcaacctaagctgcatatttagaatcacctgaagtttacaa 504
Query: 305 ataattgcctgtgagcctctctaggtggcaggacattagagcccagtgataatgccagcg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataattgcctgtgagcctctctaggtggcaggacattagagcccagtgataatgccagcg 564
Query: 365 tgacatgcccagaataacaatgtcagggccttgtgagagcagccatcataggctgaaccc 424
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgacatccccagaataacaatgtcagggccttgtgagagcagccatcataggctgaaccc 624
Query: 425 ttgtctaggaaactcttaccaagatcgcagcatgcacccagaagacaagaagccacatat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgtctaggaaactcttaccaagatcgcagcatgcacccagaagacaagaagccacatat 684
Query: 485 cttgacaacaagcccacaggatccctgttgaatgagccaggacaaagtatagaaagaacc 544
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 685 cttgacaacaagcccacaggatccctgttgaatgagccaggacaaggtatagaaagaacc 744
Query: 545 agaaatccttagagtgaatcccaagagtgttcctgcatattggaatg 591
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 745 agaaatccttagagtgaatcccaagggtgttcctgcatattggaatg 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_g20.g1 MSMg01no055_g20.g1 CHROMAT_FILE:
MSMg01no055_g20.g1 PHD_FILE: MSMg01no055_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:49 2005
(508 letters)
>mm_chr19_58624682_58625585
Length = 904
Score = 870 bits (450), Expect = 0.0
Identities = 491/506 (97%), Gaps = 4/506 (0%)
Strand = Plus / Minus
Query: 3 tgtggagattagggaataagctctctcccatcttgagaaatgactaatggttttatccca 62
||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 704 tgtggagattaggaaagaagctctcttccatcttgagaaatgactaatggttttatccca 645
Query: 63 caaagaaaaacatcagccaaagccctaggctgtggcaaggggtgaaacatgaggcctggc 122
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 644 caaagaaaaacatcagccaaagccctaggctgtagcaaggggtgaaacatgaggcctggc 585
Query: 123 tctacctggtttgtgtgaatctgagggcagaggccacaagcaagaatgctctcatcaggc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tctacctggtttgtgtgaatctgagggcagaggccacaagcaagaatgctctcatcaggc 525
Query: 183 taagcaactcagctgcaacaagatgacagatacagtcacctcacccttggccaagcccca 242
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 taagcaactcagctgcgacaagatgacagatacagtcacctcacccttggccaagcccca 465
Query: 243 accctcaaggaaaaggtgcttagatcagcttttctccctgtgagccaacaacagctactg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 accctcaaggaaaaggtgcttagatcagcttttctccctgtgagccaacaacagctactg 405
Query: 303 gaagtcctctttgagggcagcctatccacactcagacccatggggcttccacagatgcac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaagtcctctttgagggcagcctatccacactcagacccatggggcttccacagatgcac 345
Query: 363 agtaaacaacaaacttgcagtaaacatcaccaagcacaccagtaagaaaatccagtacaa 422
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 344 agtaaacaacaaacttgcagtaaacatcaccaagcacaccagtaagaaaatctagtacaa 285
Query: 423 tcagcagatgcaagaagcaggcaatatctaaatcttaaagaacaacaaatctacaactaa 482
||||||||||||||||||||||||||||||||||| ||||||| |||| || |||| |
Sbjct: 284 tcagcagatgcaagaagcaggcaatatctaaatctgaaagaactacaattcaacaa---a 228
Query: 483 aaacatgaaaaaatgggcacaaaata 508
|||||||||||| ||| |||||||||
Sbjct: 227 aaacatgaaaaa-tggacacaaaata 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 904
Length adjustment: 10
Effective length of query: 498
Effective length of database: 894
Effective search space: 445212
Effective search space used: 445212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
