BAC Information

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BAC

Clone NameMSMg01-055J18
Chromosome19 (Build37)
Map Location 7,998,199 - 7,998,855
singlet/doubletsinglet
Overlap geneAB056442
Upstream gene1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903
Downstream geneLOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055J18.T7 (MSMg01no055_j18.b1)MSMg01-055J18.TJ (MSMg01no055_j18.g1)
ACCAG283235AG283236
length704718
length of high quality
(start - end)		658 (43 - 700)591 (75 - 665)
definitionCHROMAT_FILE: MSMg01no055_j18.b1 PHD_FILE: MSMg01no055_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:03 2005CHROMAT_FILE: MSMg01no055_j18.g1 PHD_FILE: MSMg01no055_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:03 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTAATGTCCCAAAGTTACCAGGAAGAGGCTCAAACTAACTGTTACCA
GCAGAGGCCACCCACCAACCTGTTGAACTATCTGTGGCCAGACAGGACAC
TGTGTTTCCAGCTTTCATGAGCTATCTCCCATGCAGGATGTGTTTGGTGA
TAGAGCTGTCTTTGATTCATGTTACTCCTTTAAGGAACTTCTCCCCTATC
TTCATTTGAGTAGTATAATAAAACTGATTGTTTCAGCAAATTAGACTTTT
GTGTTATCTTTTCTCTAGACTCTTTTCAGTTCTCTAGCTGAAGTGAATAC
ATGTTTGTTTATATCTTTCAAAAATAGTGTCTCATATTGCTCCGATGGAG
CAATATTAGTTTCTTCTTTGAGGAGTGTCAATACTCAAAAACGGGGTGGG
GGGAGTACACTTAATGACAGTTTTGGAAATATGTGATAACACTTTAGATA
GTGTAATATAATGAAACAGAGACATTAGAAACTGCTAAAGTTGGGGCCTG
GTTCTTCCTCCTAGCCCCATGCTCATAGAAATAAGACTGACACTCAAAAT
CTATTTACAAATACCTTGACCATACAGCTATGCTCTTCTATGACTATACT
GTACCCAAAGATAACCTAGTTATTTTAATCTGAATTCTACCACGTGGCTG
TTTN

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGTCTGA
GAAGCACCTGAAAATATGTTCAGCATCCTTAATCATCAGGAAAATGCAAA
TCAAAACAACACTGAGATTCCATCCCACGCCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGAGATAGATGCTGGTGAGGATGAGAAGAAAGAGGAACA
CTCCTCCACTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGTAAATC
AGTCTGGTAGTTACTCAGAAAATTGGACATGGTACTACCGGAGGATCCCT
CAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTAGTAAGAAA
GAAACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGGAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAAGAATGGATACAAAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGACATTATCCTGAGTTA
GGTAACTCAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAGTG
GATATTAGCCCAGAAACTTAGAATACCCAAGATAGAAGTTACAATTTGCT
AAATGCATATAACTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_j18.b1 MSMg01no055_j18.b1 CHROMAT_FILE:
MSMg01no055_j18.b1 PHD_FILE: MSMg01no055_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:03 2005
         (658 letters)



>mm_chr19_7997818_7998875
          Length = 1058

 Score = 1052 bits (544), Expect = 0.0
 Identities = 629/658 (95%), Gaps = 5/658 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcattaatgtcccaaagttaccaggaagaggctcaaactaac--tgttaccagcag 62
            ||||||||||||||  ||||||||||||||||||||||||| ||||  ||||||||||||
Sbjct: 1038 gaattcattaatgttacaaagttaccaggaagaggctcaaattaactgtgttaccagcag 979

                                                                        
Query: 63   aggccacccaccaacctgttgaactatctgt-ggccagacaggacactgtgtttccagct 121
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 978  aggccacccaccaacctgttgaactatctgtgggccagacaggacactgtgtttccagct 919

                                                                        
Query: 122  ttcatgagctatctcccatgcaggatgtgtttggtgatagagctgtctttgattcatgtt 181
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 918  ttcatgagctatctcccatgcaggatgtgtttggtgatagagctgtctttgagtcatgtt 859

                                                                        
Query: 182  actcctttaaggaacttctcccctatcttcatttgagtagtataataaaactgattgttt 241
            |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 858  actcctttaaggaacttctcacctattttcatttgagtagtataatacaactgattgttt 799

                                                                        
Query: 242  cagcaaattagacttttgtgttatcttttctctagactcttttcagttctctagctgaag 301
            |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 798  cagcaagttagacttttgtgttatcttttctctagacccttttcagttccctagctgaag 739

                                                                        
Query: 302  tgaatacatgtttgtttatatctttcaaaaatagtgtctcatattgctccgatggagcaa 361
            ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 738  tgaatacatgtttgtttatatatttcaaaaatagtgtctcataatgctccgatggagcaa 679

                                                                        
Query: 362  tattagtttcttctttgaggagtgtcaatactcaaaaacggggtggggggagtacactta 421
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 678  tattagtttcttctttgaggggtgtcaatactcaaaaatggggtggggggagtacactta 619

                                                                        
Query: 422  atgacagtt-ttggaaatatgtgataacactttagatagtgtaatataatgaaacagaga 480
            |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618  atgaca-ttcttggaaatatgtgataacactttagatagtgtaatataatgaaacagaga 560

                                                                        
Query: 481  cattagaaactgctaaagttggggcctggttcttcctcctagccccatgctcatagaaat 540
            |||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 559  catttgaaactgctgaagttgggacctggttcttcctcctagccccatgctcatagaaat 500

                                                                        
Query: 541  aagactgacactcaaaatctatttacaaataccttgaccatacagctatgctcttctatg 600
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499  aagactgagactcaaaatctatttacaaataccttgaccatacagctatgctcttctatg 440

                                                                      
Query: 601  actatactgtacccaaagataacctagttattttaatctgaattctaccacgtggctg 658
            ||||||||||| |  ||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 439  actatactgtaactgaagataacccagttattttaacctgaattctaccacatggctg 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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