Query= MSMg01no055_n20.b1 MSMg01no055_n20.b1 CHROMAT_FILE:
MSMg01no055_n20.b1 PHD_FILE: MSMg01no055_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:23 2005
(301 letters)
>mm_chr19_43753330_43754031
Length = 702
Score = 522 bits (270), Expect = e-153
Identities = 294/302 (97%), Gaps = 1/302 (0%)
Strand = Plus / Plus
Query: 1 atatgcagagtaggcagctataactcagactcaaacggaggaaaactatttatttcgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgcagagtaggcagctataactcagactcaaacggaggaaaactatttatttcgttg 260
Query: 61 gttgcgtttggtagggagttttatttcataactctcttcaaactaagctgggacacagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgcgtttggtagggagttttatttcataactctcttcaaactaagctgggacacagga 320
Query: 121 gccttggcatggaagacacctgctcatttttgctaagcacaaagcttgtcactctttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccttggcatggaagacacctgctcatttttgctaagcacaaagcttgtcactctttttg 380
Query: 181 cttacttagtttcaatatccatattgtgttgatgaaaatgttacaaatcttgtaactaag 240
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcacttaatttcaatatccatattgtgttgatgaaaatgttacaaatcttgtaactaag 440
Query: 241 tccaccccactattaactgcaggttttt-taagtcctattagtcacacaatgtcttcctt 299
|||||||||| | |||||||||||||| ||||||||||||||||||||| | |||||||
Sbjct: 441 tccaccccacaagcaactgcaggtttttgtaagtcctattagtcacacaaggccttcctt 500
Query: 300 tt 301
||
Sbjct: 501 tt 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 702
Length adjustment: 9
Effective length of query: 292
Effective length of database: 693
Effective search space: 202356
Effective search space used: 202356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_n20.g1 MSMg01no055_n20.g1 CHROMAT_FILE:
MSMg01no055_n20.g1 PHD_FILE: MSMg01no055_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:23 2005
(287 letters)
>mm_chr19_43913394_43914080
Length = 687
Score = 545 bits (282), Expect = e-160
Identities = 285/286 (99%)
Strand = Plus / Minus
Query: 1 gatgttaaccacagccacaaaaacccatgtccagtgctacctatttaactggggactctc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 486 gatgttaaccacagccacaaaaacccatgtccagtgctacctatttaagtggggactctc 427
Query: 61 cctgagacttgtaagtcacaaaccaggtcttttatgattgtgccctgaagctgcctgaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cctgagacttgtaagtcacaaaccaggtcttttatgattgtgccctgaagctgcctgaac 367
Query: 121 cgcctgctttggactcttagtggagagtttagtcccaagaggcctgggtgatatcccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgcctgctttggactcttagtggagagtttagtcccaagaggcctgggtgatatcccagg 307
Query: 181 ttgttggcagaagccttcacattttctcttaggacgaatttgggtttaactccaacctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttgttggcagaagccttcacattttctcttaggacgaatttgggtttaactccaacctca 247
Query: 241 aagaacagtctcagatcagattgtaagggaagtaaaaagctcacag 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagaacagtctcagatcagattgtaagggaagtaaaaagctcacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
